Wall clock time and date at job start Mon Mar 30 2020 02:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47380 * 2 1 4 4 H 1.09004 * 110.33665 * 58.63701 * 3 2 1 5 5 C 1.50124 * 110.38318 * 296.36211 * 3 2 1 6 6 H 1.09005 * 109.73637 * 321.27443 * 5 3 2 7 7 C 1.50743 * 126.53504 * 97.26160 * 5 3 2 8 8 N 1.50183 * 102.14153 * 154.90716 * 7 5 3 9 9 C 1.49703 * 107.65160 * 334.69869 * 8 7 5 10 10 C 1.50139 * 104.73769 * 352.55710 * 9 8 7 11 11 H 1.09002 * 110.06901 * 279.64312 * 10 9 8 12 12 C 1.50754 * 126.47785 * 143.75455 * 10 9 8 13 13 N 1.49701 * 110.48358 * 180.98700 * 3 2 1 14 14 C 1.46898 * 110.99970 * 4.65065 * 13 3 2 15 15 C 1.50701 * 109.47308 * 185.11880 * 14 13 3 16 16 H 1.08000 * 119.99381 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00249 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00076 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99831 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47343 * 89.99921 * 19 17 15 21 21 H 1.48507 * 109.47180 * 209.99953 * 19 17 15 22 22 H 1.48502 * 109.47419 * 329.99840 * 19 17 15 23 23 H 1.09006 * 109.47221 * 185.69437 * 1 2 3 24 24 H 1.08997 * 109.47057 * 305.69302 * 1 2 3 25 25 H 1.08997 * 109.47347 * 65.70022 * 1 2 3 26 26 H 1.09010 * 109.47085 * 240.00037 * 2 1 3 27 27 H 1.09001 * 109.47288 * 120.00658 * 2 1 3 28 28 H 1.08994 * 110.86833 * 36.73972 * 7 5 3 29 29 H 1.09005 * 110.86776 * 273.06511 * 7 5 3 30 30 H 1.00899 * 111.00319 * 96.36873 * 8 7 5 31 31 H 1.09001 * 110.38313 * 111.36561 * 9 8 7 32 32 H 1.08995 * 110.38605 * 233.62607 * 9 8 7 33 33 H 1.09005 * 110.86728 * 323.29954 * 12 10 9 34 34 H 1.09006 * 110.87242 * 86.97123 * 12 10 9 35 35 H 1.09007 * 109.47110 * 305.11781 * 14 13 3 36 36 H 1.09001 * 109.47334 * 65.11469 * 14 13 3 37 37 H 0.97001 * 120.00024 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6648 1.9770 0.8728 5 6 1.6252 2.1437 -1.2609 6 1 1.6989 1.4578 -2.1049 7 6 0.4325 3.0492 -1.4333 8 7 0.8543 3.9108 -2.5889 9 6 2.3509 3.9376 -2.6124 10 6 2.7654 3.2369 -1.3509 11 1 2.6958 3.9193 -0.5038 12 6 3.9582 2.3310 -1.1793 13 7 3.5366 1.4689 -0.0242 14 6 4.0851 0.1122 -0.1521 15 6 5.5875 0.1657 -0.0467 16 1 6.0850 1.1128 0.1010 17 6 6.3267 -0.9946 -0.1378 18 7 7.6378 -0.9479 -0.0453 19 14 5.4661 -2.6328 -0.3925 20 1 5.3298 -2.8995 -1.8470 21 1 6.2653 -3.7149 0.2365 22 1 4.1189 -2.5864 0.2306 23 1 -0.3634 -1.0226 0.1020 24 1 -0.3633 0.5996 0.8346 25 1 -0.3634 0.4229 -0.9366 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 0.2695 3.6511 -0.5394 29 1 -0.4590 2.4738 -1.6832 30 1 0.4853 3.5558 -3.4583 31 1 2.7265 3.4027 -3.4847 32 1 2.7123 4.9659 -2.6139 33 1 4.1207 1.7294 -2.0737 34 1 4.8499 2.9061 -0.9296 35 1 3.6872 -0.5172 0.6441 36 1 3.8033 -0.3040 -1.1193 37 1 8.1579 -1.7642 -0.1090 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085287385.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:11 Heat of formation + Delta-G solvation = 29.485933 kcal Electronic energy + Delta-G solvation = -16409.189902 eV Core-core repulsion = 13993.929442 eV Total energy + Delta-G solvation = -2415.260460 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.47778 -36.30528 -33.29411 -32.52682 -30.29389 -29.09039 -26.81659 -26.08171 -23.07547 -22.30162 -20.80152 -19.93006 -18.69399 -16.97081 -16.07419 -15.45216 -14.99768 -14.71812 -14.19882 -13.73470 -13.29816 -13.08880 -12.84739 -12.59425 -12.35595 -11.96238 -11.77151 -11.30145 -11.22024 -11.16206 -10.87849 -10.73936 -10.50569 -10.39656 -10.09028 -9.87157 -9.68676 -9.21199 -8.60236 -8.56974 -7.40977 -6.06786 -4.03860 3.24880 3.33196 3.34540 4.11099 4.22055 4.39671 4.58132 4.84235 5.17332 5.21487 5.24974 5.40828 5.47202 5.52658 5.61719 5.70542 5.78219 5.84393 5.95683 6.00425 6.02217 6.15029 6.18530 6.25046 6.46070 6.50293 6.54173 6.64005 6.68602 6.75873 6.95954 7.28433 7.51398 7.85216 7.89776 8.63441 9.02458 9.55117 11.06566 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.032406 B = 0.008896 C = 0.007511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.817057 B = 3146.734000 C = 3726.791954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.088 3.912 4 H 0.079 0.921 5 C -0.155 4.155 6 H 0.068 0.932 7 C 0.067 3.933 8 N -0.685 5.685 9 C 0.064 3.936 10 C -0.134 4.134 11 H 0.084 0.916 12 C 0.077 3.923 13 N -0.508 5.508 14 C 0.154 3.846 15 C -0.510 4.510 16 H 0.079 0.921 17 C 0.069 3.931 18 N -0.900 5.900 19 Si 0.873 3.127 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.266 1.266 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.334 0.666 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.035 0.965 36 H -0.017 1.017 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.422 5.030 -3.821 15.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C -0.021 4.021 4 H 0.097 0.903 5 C -0.176 4.176 6 H 0.086 0.914 7 C -0.062 4.062 8 N -0.313 5.313 9 C -0.065 4.065 10 C -0.154 4.154 11 H 0.102 0.898 12 C -0.051 4.051 13 N -0.231 5.231 14 C 0.028 3.972 15 C -0.548 4.548 16 H 0.097 0.903 17 C -0.133 4.133 18 N -0.539 5.539 19 Si 0.700 3.300 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.191 1.191 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.148 0.852 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.053 0.947 36 H 0.001 0.999 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.129 5.759 -3.007 15.551 hybrid contribution -0.310 -2.346 -1.278 2.689 sum -14.439 3.413 -4.285 15.443 Atomic orbital electron populations 1.21753 0.96147 1.01116 1.01366 1.21997 0.95248 0.97316 1.02928 1.21701 0.90144 0.94409 0.95831 0.90316 1.23133 0.96972 0.97371 1.00116 0.91380 1.22143 0.95758 0.93143 0.95137 1.63347 1.08351 1.53219 1.06390 1.21791 0.87579 1.00447 0.96708 1.22540 0.97075 0.96898 0.98843 0.89760 1.22080 0.95849 0.93954 0.93196 1.65358 1.03546 1.13911 1.40307 1.20408 0.96515 0.85797 0.94510 1.21064 0.88854 0.95791 1.49115 0.90259 1.24897 0.94702 0.98728 0.94967 1.69895 1.04937 1.28248 1.50851 0.86896 0.80197 0.84333 0.78557 1.20448 1.21084 1.19086 0.93145 0.92740 0.93155 0.91923 0.90952 0.90195 0.91599 0.85181 0.93088 0.90279 0.93574 0.90152 0.94727 0.99901 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.62 37.16 0.36 -1.46 16 2 C -0.14 -2.21 4.15 -26.73 -0.11 -2.32 16 3 C 0.09 1.47 3.32 -67.58 -0.22 1.25 16 4 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 5 C -0.16 -2.25 1.48 -90.31 -0.13 -2.38 16 6 H 0.07 1.07 7.91 -51.93 -0.41 0.66 16 7 C 0.07 0.81 7.26 -3.11 -0.02 0.79 16 8 N -0.69 -8.27 7.57 -111.80 -0.85 -9.12 16 9 C 0.06 0.83 7.44 -3.68 -0.03 0.80 16 10 C -0.13 -2.04 2.91 -90.30 -0.26 -2.31 16 11 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 12 C 0.08 1.47 5.79 -3.11 -0.02 1.45 16 13 N -0.51 -10.64 5.31 -225.96 -1.20 -11.84 16 14 C 0.15 3.72 2.56 -4.98 -0.01 3.71 16 15 C -0.51 -14.56 9.28 -34.44 -0.32 -14.88 16 16 H 0.08 2.47 7.90 -52.49 -0.41 2.06 16 17 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 18 N -0.90 -27.70 13.96 55.43 0.77 -26.92 16 19 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.58 6.70 -51.93 -0.35 0.23 16 26 H 0.06 1.10 6.69 -51.92 -0.35 0.75 16 27 H 0.07 1.26 6.82 -51.93 -0.35 0.91 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 0.70 7.42 -51.93 -0.39 0.31 16 30 H 0.33 3.48 8.94 -39.29 -0.35 3.13 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.93 7.78 -51.93 -0.40 0.53 16 34 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 35 H 0.03 0.85 5.35 -51.93 -0.28 0.57 16 36 H -0.02 -0.40 6.40 -51.93 -0.33 -0.73 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 279.71 15.07 4.22 4.22 Total: -1.00 -30.02 279.71 -8.77 -38.79 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.17 Total: 1.46 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -0.87 Total: -13.45 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -1.27 Total: -47.88 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.02 -8.77 -38.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085287385.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.277 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds