Wall clock time and date at job start Mon Mar 30 2020 02:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47380 * 2 1 4 4 H 1.09004 * 110.33665 * 58.63701 * 3 2 1 5 5 C 1.50124 * 110.38318 * 296.36211 * 3 2 1 6 6 H 1.09005 * 109.73637 * 321.27443 * 5 3 2 7 7 C 1.50743 * 126.53504 * 97.26160 * 5 3 2 8 8 N 1.50183 * 102.14153 * 154.90716 * 7 5 3 9 9 C 1.49703 * 107.65160 * 334.69869 * 8 7 5 10 10 C 1.50139 * 104.73769 * 352.55710 * 9 8 7 11 11 H 1.09002 * 110.06901 * 279.64312 * 10 9 8 12 12 C 1.50754 * 126.47785 * 143.75455 * 10 9 8 13 13 N 1.49701 * 110.48358 * 180.98700 * 3 2 1 14 14 C 1.46898 * 110.99970 * 4.65065 * 13 3 2 15 15 C 1.50701 * 109.47308 * 185.11880 * 14 13 3 16 16 H 1.08000 * 119.99381 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00249 * 179.97438 * 15 14 13 18 18 N 1.31517 * 120.00076 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99831 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47343 * 89.99921 * 19 17 15 21 21 H 1.48507 * 109.47180 * 209.99953 * 19 17 15 22 22 H 1.48502 * 109.47419 * 329.99840 * 19 17 15 23 23 H 1.09006 * 109.47221 * 185.69437 * 1 2 3 24 24 H 1.08997 * 109.47057 * 305.69302 * 1 2 3 25 25 H 1.08997 * 109.47347 * 65.70022 * 1 2 3 26 26 H 1.09010 * 109.47085 * 240.00037 * 2 1 3 27 27 H 1.09001 * 109.47288 * 120.00658 * 2 1 3 28 28 H 1.08994 * 110.86833 * 36.73972 * 7 5 3 29 29 H 1.09005 * 110.86776 * 273.06511 * 7 5 3 30 30 H 1.00899 * 111.00319 * 96.36873 * 8 7 5 31 31 H 1.09001 * 110.38313 * 111.36561 * 9 8 7 32 32 H 1.08995 * 110.38605 * 233.62607 * 9 8 7 33 33 H 1.09005 * 110.86728 * 323.29954 * 12 10 9 34 34 H 1.09006 * 110.87242 * 86.97123 * 12 10 9 35 35 H 1.09007 * 109.47110 * 305.11781 * 14 13 3 36 36 H 1.09001 * 109.47334 * 65.11469 * 14 13 3 37 37 H 0.97001 * 120.00024 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6648 1.9770 0.8728 5 6 1.6252 2.1437 -1.2609 6 1 1.6989 1.4578 -2.1049 7 6 0.4325 3.0492 -1.4333 8 7 0.8543 3.9108 -2.5889 9 6 2.3509 3.9376 -2.6124 10 6 2.7654 3.2369 -1.3509 11 1 2.6958 3.9193 -0.5038 12 6 3.9582 2.3310 -1.1793 13 7 3.5366 1.4689 -0.0242 14 6 4.0851 0.1122 -0.1521 15 6 5.5875 0.1657 -0.0467 16 1 6.0850 1.1128 0.1010 17 6 6.3267 -0.9946 -0.1378 18 7 7.6378 -0.9479 -0.0453 19 14 5.4661 -2.6328 -0.3925 20 1 5.3298 -2.8995 -1.8470 21 1 6.2653 -3.7149 0.2365 22 1 4.1189 -2.5864 0.2306 23 1 -0.3634 -1.0226 0.1020 24 1 -0.3633 0.5996 0.8346 25 1 -0.3634 0.4229 -0.9366 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 0.2695 3.6511 -0.5394 29 1 -0.4590 2.4738 -1.6832 30 1 0.4853 3.5558 -3.4583 31 1 2.7265 3.4027 -3.4847 32 1 2.7123 4.9659 -2.6139 33 1 4.1207 1.7294 -2.0737 34 1 4.8499 2.9061 -0.9296 35 1 3.6872 -0.5172 0.6441 36 1 3.8033 -0.3040 -1.1193 37 1 8.1579 -1.7642 -0.1090 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085287385.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:10 Heat of formation + Delta-G solvation = 6.235961 kcal Electronic energy + Delta-G solvation = -16410.198097 eV Core-core repulsion = 13993.929442 eV Total energy + Delta-G solvation = -2416.268655 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.78098 -37.63710 -35.00755 -34.23223 -31.93837 -30.20253 -28.54668 -27.33293 -24.69854 -23.68000 -22.12767 -21.19383 -20.21038 -18.99926 -17.31293 -16.75991 -16.42981 -16.26940 -15.92925 -15.18537 -14.83780 -14.37920 -14.23757 -14.03703 -13.93153 -13.24506 -13.07480 -12.89264 -12.63900 -12.46859 -12.32364 -12.18693 -11.86030 -11.78734 -11.74664 -11.64403 -11.31163 -10.98554 -10.82423 -9.60408 -9.03190 -8.32659 -6.36084 1.28665 1.31147 1.42100 2.29708 2.93035 2.99989 3.05674 3.22438 3.63575 3.96956 4.03642 4.24538 4.34635 4.37349 4.45973 4.53102 4.57184 4.66323 4.74237 4.77110 4.79884 4.88492 4.92370 5.00571 5.05474 5.14337 5.16656 5.29018 5.33423 5.43893 5.53809 5.60453 5.92786 6.14079 6.42419 6.56888 6.70242 7.27674 8.84325 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.032406 B = 0.008896 C = 0.007511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.817057 B = 3146.734000 C = 3726.791954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.136 4.136 3 C 0.087 3.913 4 H 0.088 0.912 5 C -0.140 4.140 6 H 0.060 0.940 7 C 0.075 3.925 8 N -0.682 5.682 9 C 0.069 3.931 10 C -0.128 4.128 11 H 0.080 0.920 12 C 0.078 3.922 13 N -0.534 5.534 14 C 0.173 3.827 15 C -0.521 4.521 16 H 0.034 0.966 17 C 0.009 3.991 18 N -0.947 5.947 19 Si 0.944 3.056 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.247 1.247 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.347 0.653 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.030 0.970 34 H 0.057 0.943 35 H 0.035 0.965 36 H -0.017 1.017 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.702 4.621 -4.498 18.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.174 4.174 3 C -0.021 4.021 4 H 0.106 0.894 5 C -0.161 4.161 6 H 0.078 0.922 7 C -0.054 4.054 8 N -0.311 5.311 9 C -0.060 4.060 10 C -0.148 4.148 11 H 0.098 0.902 12 C -0.050 4.050 13 N -0.258 5.258 14 C 0.045 3.955 15 C -0.559 4.559 16 H 0.052 0.948 17 C -0.189 4.189 18 N -0.588 5.588 19 Si 0.767 3.233 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.171 1.171 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.163 0.837 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.001 0.999 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.437 5.371 -3.690 18.615 hybrid contribution 0.793 -2.116 -1.033 2.484 sum -16.644 3.255 -4.723 17.604 Atomic orbital electron populations 1.21688 0.92753 1.02308 1.02728 1.21958 0.98217 0.96051 1.01199 1.21766 0.87183 0.95676 0.97451 0.89424 1.23033 0.98007 0.96775 0.98295 0.92198 1.22173 0.95283 0.92553 0.95363 1.63333 1.07278 1.53287 1.07213 1.21757 0.88386 1.00580 0.95304 1.22393 0.95282 0.96840 1.00266 0.90152 1.21937 0.96918 0.94205 0.91919 1.65193 1.06886 1.12246 1.41427 1.20066 0.93455 0.87767 0.94171 1.21329 0.91515 0.94187 1.48917 0.94806 1.25850 0.95350 1.03183 0.94487 1.70052 1.06850 1.29670 1.52240 0.85754 0.79706 0.78693 0.79100 1.19334 1.20398 1.17082 0.92131 0.91401 0.91713 0.93605 0.92710 0.89875 0.89048 0.83737 0.92743 0.89483 0.95154 0.92498 0.94746 0.99930 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.62 71.98 0.69 -2.21 16 2 C -0.14 -4.14 4.15 30.59 0.13 -4.01 16 3 C 0.09 2.80 3.32 43.44 0.14 2.95 16 4 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 5 C -0.14 -3.76 1.48 -10.59 -0.02 -3.77 16 6 H 0.06 1.74 7.91 -2.38 -0.02 1.72 16 7 C 0.08 1.53 7.26 84.93 0.62 2.15 16 8 N -0.68 -14.10 7.57 -507.62 -3.84 -17.94 16 9 C 0.07 1.64 7.44 84.83 0.63 2.27 16 10 C -0.13 -3.80 2.91 -10.59 -0.03 -3.83 16 11 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 12 C 0.08 3.09 5.79 84.93 0.49 3.58 16 13 N -0.53 -22.75 5.31 -868.79 -4.62 -27.36 16 14 C 0.17 8.46 2.56 85.56 0.22 8.68 16 15 C -0.52 -31.00 9.28 25.60 0.24 -30.77 16 16 H 0.03 2.25 7.90 -2.91 -0.02 2.23 16 17 C 0.01 0.51 5.47 84.65 0.46 0.98 16 18 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 19 Si 0.94 44.60 27.47 68.60 1.88 46.48 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 23 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 24 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 1.20 6.70 -2.39 -0.02 1.18 16 26 H 0.05 1.53 6.69 -2.38 -0.02 1.52 16 27 H 0.05 1.84 6.82 -2.39 -0.02 1.82 16 28 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.09 1.46 7.42 -2.38 -0.02 1.44 16 30 H 0.35 5.88 8.94 -89.69 -0.80 5.08 16 31 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.03 1.27 7.78 -2.38 -0.02 1.25 16 34 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 35 H 0.03 1.69 5.35 -2.38 -0.01 1.67 16 36 H -0.02 -0.82 6.40 -2.39 -0.02 -0.84 16 37 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -67.05 279.71 -2.52 -69.57 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.18 Total: 13.18 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: 3.58 Total: -23.99 kcal Atomic # 7 Polarization: -97.08 SS G_CDS: -8.16 Total: -105.24 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.48 kcal Total: -67.05 -2.52 -69.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085287385.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.806 kcal (2) G-P(sol) polarization free energy of solvation -67.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds