Wall clock time and date at job start Mon Mar 30 2020 03:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.50227 * 2 1 4 4 C 1.53052 * 109.49645 * 120.05914 * 2 1 3 5 5 C 1.53036 * 109.53485 * 58.61696 * 4 2 1 6 6 H 1.09004 * 109.50289 * 301.38456 * 5 4 2 7 7 N 1.46893 * 109.49718 * 181.31311 * 5 4 2 8 8 C 1.46908 * 111.00199 * 155.06562 * 7 5 4 9 9 C 1.53000 * 117.50082 * 223.62454 * 8 7 5 10 10 C 1.52998 * 59.99984 * 252.51133 * 9 8 7 11 11 C 1.53204 * 109.33858 * 61.34965 * 5 4 2 12 12 N 1.46926 * 108.77206 * 305.41203 * 11 5 4 13 13 C 1.36932 * 120.60747 * 233.53362 * 12 11 5 14 14 H 1.08002 * 119.99648 * 27.68905 * 13 12 11 15 15 C 1.38810 * 120.00331 * 207.69634 * 13 12 11 16 16 N 1.31611 * 120.00087 * 17.34491 * 15 13 12 17 17 Si 1.86807 * 119.99888 * 197.35212 * 15 13 12 18 18 H 1.48494 * 109.47084 * 89.99855 * 17 15 13 19 19 H 1.48499 * 109.46765 * 209.99721 * 17 15 13 20 20 H 1.48497 * 109.46918 * 329.99705 * 17 15 13 21 21 C 1.46931 * 118.76532 * 53.55463 * 12 11 5 22 22 H 1.09000 * 109.46925 * 299.94069 * 1 2 3 23 23 H 1.09002 * 109.46918 * 59.93952 * 1 2 3 24 24 H 1.08992 * 109.47383 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.45624 * 298.59748 * 4 2 1 26 26 H 1.09001 * 109.45825 * 178.63583 * 4 2 1 27 27 H 1.00907 * 111.00212 * 31.11508 * 7 5 4 28 28 H 1.08997 * 115.54747 * 9.33336 * 8 7 5 29 29 H 1.09001 * 117.49465 * 0.02562 * 9 8 7 30 30 H 1.08999 * 117.50077 * 145.01544 * 9 8 7 31 31 H 1.08995 * 117.49751 * 252.50900 * 10 9 8 32 32 H 1.08997 * 117.51721 * 107.48283 * 10 9 8 33 33 H 1.09005 * 109.58453 * 65.16697 * 11 5 4 34 34 H 1.08998 * 109.58450 * 185.58823 * 11 5 4 35 35 H 0.97007 * 120.00390 * 180.02562 * 16 15 13 36 36 H 1.08997 * 109.58529 * 186.62601 * 21 12 11 37 37 H 1.08994 * 109.58659 * 66.19761 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 1.2487 5 6 1.5035 -2.1555 1.2664 6 1 0.4138 -2.1358 1.2547 7 7 1.9686 -2.8385 2.4810 8 6 1.0612 -3.9335 2.8494 9 6 0.6897 -4.0765 4.3268 10 6 1.6406 -5.0832 3.6762 11 6 2.0146 -2.9043 0.0314 12 7 1.6528 -2.1384 -1.1691 13 6 0.9661 -2.7321 -2.1943 14 1 0.3106 -3.5665 -1.9931 15 6 1.1127 -2.2617 -3.4920 16 7 2.1371 -1.4961 -3.8027 17 14 -0.1443 -2.7154 -4.7974 18 1 -1.2271 -1.6994 -4.8161 19 1 0.5164 -2.7592 -6.1266 20 1 -0.7211 -4.0481 -4.4871 21 6 2.0420 -0.7238 -1.2493 22 1 -0.3633 0.5129 0.8905 23 1 -0.3633 0.5148 -0.8895 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6982 -0.1954 2.1390 26 1 3.1305 -0.7435 1.2359 27 1 2.0768 -2.1866 3.2435 28 1 0.2971 -4.1791 2.1120 29 1 1.1183 -3.3577 5.0252 30 1 -0.3191 -4.4160 4.5615 31 1 1.2573 -6.0851 3.4829 32 1 2.6950 -5.0272 3.9464 33 1 3.0986 -3.0045 0.0875 34 1 1.5560 -3.8921 -0.0127 35 1 2.2393 -1.1670 -4.7095 36 1 1.6014 -0.2735 -2.1387 37 1 3.1281 -0.6458 -1.2974 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108035756.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:40 Heat of formation + Delta-G solvation = 41.656998 kcal Electronic energy + Delta-G solvation = -16231.027332 eV Core-core repulsion = 13816.294649 eV Total energy + Delta-G solvation = -2414.732683 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.64033 -36.97970 -33.63026 -32.51364 -30.68289 -27.66829 -26.09090 -25.25662 -22.29249 -21.71972 -21.52962 -20.54773 -18.16127 -16.66350 -15.80939 -15.25266 -14.64172 -14.34346 -14.01963 -13.37220 -13.21514 -12.84423 -12.46466 -12.25234 -12.04060 -11.63650 -11.43604 -11.04663 -10.89155 -10.83393 -10.65297 -10.35246 -10.25937 -10.09646 -10.06280 -9.78526 -9.51009 -9.27771 -8.44258 -7.92254 -6.60373 -5.74371 -3.15740 3.39817 3.46742 3.47802 3.95044 4.27069 4.55777 5.02487 5.09335 5.30040 5.39337 5.45987 5.60474 5.66477 5.67759 5.72546 5.92862 5.99376 6.06003 6.13239 6.20342 6.22820 6.42475 6.48704 6.58584 6.74030 6.87980 6.93385 7.03337 7.11042 7.37977 7.50278 7.67746 7.70924 7.84016 8.50266 9.26540 9.90513 10.47234 11.34243 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.031028 B = 0.008086 C = 0.007139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.193417 B = 3461.835829 C = 3921.055175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 H 0.056 0.944 4 C -0.104 4.104 5 C 0.071 3.929 6 H 0.048 0.952 7 N -0.655 5.655 8 C 0.033 3.967 9 C -0.213 4.213 10 C -0.174 4.174 11 C 0.162 3.838 12 N -0.589 5.589 13 C -0.248 4.248 14 H 0.064 0.936 15 C 0.003 3.997 16 N -0.902 5.902 17 Si 0.899 3.101 18 H -0.288 1.288 19 H -0.292 1.292 20 H -0.280 1.280 21 C 0.175 3.825 22 H 0.029 0.971 23 H 0.047 0.953 24 H 0.064 0.936 25 H 0.041 0.959 26 H 0.061 0.939 27 H 0.335 0.665 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.024 0.976 34 H 0.048 0.952 35 H 0.253 0.747 36 H 0.088 0.912 37 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.318 -0.293 12.345 12.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.137 4.137 3 H 0.075 0.925 4 C -0.143 4.143 5 C -0.040 4.040 6 H 0.066 0.934 7 N -0.285 5.285 8 C -0.078 4.078 9 C -0.252 4.252 10 C -0.213 4.213 11 C 0.035 3.965 12 N -0.312 5.312 13 C -0.378 4.378 14 H 0.082 0.918 15 C -0.196 4.196 16 N -0.547 5.547 17 Si 0.730 3.270 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.205 1.205 21 C 0.049 3.951 22 H 0.049 0.951 23 H 0.066 0.934 24 H 0.083 0.917 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.154 0.846 28 H 0.126 0.874 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.042 0.958 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -1.826 -0.637 11.804 11.961 hybrid contribution -1.321 0.288 -0.282 1.382 sum -3.147 -0.349 11.521 11.949 Atomic orbital electron populations 1.21697 0.95838 1.02136 0.99263 1.21773 0.96036 0.98351 0.97497 0.92534 1.21594 1.00619 0.94600 0.97439 1.22255 0.97634 0.93547 0.90539 0.93424 1.60233 1.48051 1.13300 1.06900 1.22489 0.97139 0.95877 0.92325 1.23400 1.00366 1.04278 0.97185 1.23069 0.99197 0.94637 1.04354 1.20803 0.96996 0.93522 0.85177 1.44004 1.65472 1.05930 1.15764 1.19161 1.17887 1.14906 0.85842 0.91835 1.24993 0.97045 1.00665 0.96884 1.70038 1.27410 1.38535 1.18729 0.86330 0.81208 0.78191 0.81319 1.21519 1.21794 1.20498 1.20832 0.96227 0.83763 0.94294 0.95146 0.93391 0.91684 0.93987 0.91993 0.84613 0.87352 0.89112 0.89213 0.89071 0.88629 0.95772 0.93314 0.93704 0.89399 0.96471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.70 37.16 0.32 -2.12 16 2 C -0.12 -2.22 3.21 -90.50 -0.29 -2.51 16 3 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.10 -1.80 4.71 -26.69 -0.13 -1.92 16 5 C 0.07 1.26 2.20 -67.59 -0.15 1.11 16 6 H 0.05 0.89 5.93 -51.93 -0.31 0.58 16 7 N -0.65 -9.99 6.59 -99.61 -0.66 -10.65 16 8 C 0.03 0.46 6.09 -67.71 -0.41 0.05 16 9 C -0.21 -2.41 10.23 -26.73 -0.27 -2.68 16 10 C -0.17 -2.11 10.46 -26.73 -0.28 -2.39 16 11 C 0.16 3.54 6.01 -3.70 -0.02 3.52 16 12 N -0.59 -14.78 2.43 -172.31 -0.42 -15.20 16 13 C -0.25 -6.83 9.58 -15.06 -0.14 -6.97 16 14 H 0.06 1.73 7.89 -52.49 -0.41 1.32 16 15 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 16 N -0.90 -26.36 11.19 55.49 0.62 -25.73 16 17 Si 0.90 21.83 29.59 -169.99 -5.03 16.80 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C 0.17 4.19 4.71 -3.71 -0.02 4.17 16 22 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.06 1.31 5.97 -51.93 -0.31 1.00 16 25 H 0.04 0.63 8.10 -51.93 -0.42 0.21 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.33 4.54 8.12 -39.29 -0.32 4.22 16 28 H 0.11 1.62 7.77 -51.93 -0.40 1.21 16 29 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 1.08 7.93 -51.93 -0.41 0.66 16 35 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.09 2.35 6.04 -51.93 -0.31 2.04 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 289.36 15.07 4.36 4.36 Total: -1.00 -28.51 289.36 -8.86 -37.37 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -6.26 Total: 2.81 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -1.48 Total: -9.77 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.46 Total: -51.58 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.51 -8.86 -37.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108035756.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.030 kcal (2) G-P(sol) polarization free energy of solvation -28.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds