Wall clock time and date at job start Mon Mar 30 2020 02:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 120.00524 * 2 1 4 4 N 1.46896 * 109.47406 * 124.99889 * 3 2 1 5 5 C 1.46958 * 110.99618 * 66.04801 * 4 3 2 6 6 C 1.53054 * 109.36425 * 183.18917 * 5 4 3 7 7 H 1.08997 * 109.49014 * 61.56956 * 6 5 4 8 8 C 1.50706 * 109.48860 * 181.63224 * 6 5 4 9 9 H 1.08002 * 119.99803 * 34.99531 * 8 6 5 10 10 C 1.37870 * 120.00288 * 214.99259 * 8 6 5 11 11 N 1.31508 * 120.00257 * 182.18326 * 10 8 6 12 12 Si 1.86808 * 119.99833 * 2.17723 * 10 8 6 13 13 H 1.48506 * 109.46592 * 85.12697 * 12 10 8 14 14 H 1.48494 * 109.47136 * 205.12788 * 12 10 8 15 15 H 1.48495 * 109.47029 * 325.13211 * 12 10 8 16 16 N 1.46950 * 109.36581 * 301.60009 * 6 5 4 17 17 C 1.46958 * 110.88090 * 59.31967 * 16 6 5 18 18 C 1.46950 * 111.00388 * 189.84823 * 4 3 2 19 19 C 1.53000 * 109.49092 * 296.78307 * 18 4 3 20 20 C 1.53003 * 109.48856 * 56.82576 * 18 4 3 21 21 H 1.07998 * 120.00312 * 180.02562 * 1 2 3 22 22 H 1.07999 * 119.99525 * 359.97438 * 1 2 3 23 23 H 1.07999 * 119.99525 * 180.02562 * 2 1 3 24 24 H 1.09008 * 109.47067 * 5.00179 * 3 2 1 25 25 H 1.08999 * 109.47374 * 245.00866 * 3 2 1 26 26 H 1.09001 * 109.48595 * 63.22391 * 5 4 3 27 27 H 1.09004 * 109.51052 * 303.17069 * 5 4 3 28 28 H 0.97005 * 119.99933 * 179.97438 * 11 10 8 29 29 H 1.00897 * 111.00381 * 183.19217 * 16 6 5 30 30 H 1.09001 * 109.48595 * 60.64652 * 17 16 6 31 31 H 1.09003 * 109.49237 * 180.71100 * 17 16 6 32 32 H 1.08992 * 109.47192 * 59.99796 * 19 18 4 33 33 H 1.09005 * 109.47211 * 180.02562 * 19 18 4 34 34 H 1.09006 * 109.46964 * 299.99586 * 19 18 4 35 35 H 1.08996 * 109.46876 * 59.99897 * 20 18 4 36 36 H 1.09003 * 109.46998 * 179.97438 * 20 18 4 37 37 H 1.08990 * 109.47212 * 299.99841 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9964 1.3319 1.1345 5 6 4.0498 0.3198 0.9741 6 6 4.9520 0.3260 2.2105 7 1 4.3636 0.0690 3.0913 8 6 6.0570 -0.6830 2.0316 9 1 6.4802 -0.8525 1.0525 10 6 6.5278 -1.3896 3.1178 11 7 7.5211 -2.2387 2.9696 12 14 5.7549 -1.1408 4.8002 13 1 4.5622 -2.0158 4.9312 14 1 6.7416 -1.4876 5.8544 15 1 5.3464 0.2788 4.9522 16 7 5.5335 1.6646 2.3827 17 6 4.4800 2.6766 2.5431 18 6 3.5779 2.6704 1.3067 19 6 4.4038 3.0311 0.0704 20 6 2.4559 3.6948 1.4878 21 1 -0.5400 -0.9353 0.0004 22 1 -0.5399 0.9353 0.0004 23 1 1.8499 -0.9353 -0.0004 24 1 1.3587 2.1316 0.0896 25 1 2.6213 1.4026 -0.9314 26 1 4.6436 0.5501 0.0895 27 1 3.5950 -0.6643 0.8607 28 1 7.8525 -2.7356 3.7339 29 1 6.1742 1.6830 3.1619 30 1 3.8862 2.4463 3.4277 31 1 4.9351 3.6606 2.6563 32 1 3.7615 3.0248 -0.8102 33 1 4.8353 4.0239 0.1986 34 1 5.2035 2.3016 -0.0579 35 1 1.8682 3.4380 2.3690 36 1 2.8876 4.6875 1.6160 37 1 1.8129 3.6888 0.6078 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219411386.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:48 Heat of formation + Delta-G solvation = 31.784870 kcal Electronic energy + Delta-G solvation = -16494.656944 eV Core-core repulsion = 14079.496173 eV Total energy + Delta-G solvation = -2415.160771 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.43672 -35.10929 -33.82756 -32.00392 -31.56725 -27.96938 -27.11481 -25.99241 -23.92116 -23.15217 -20.37674 -19.42590 -17.71864 -16.91978 -15.79868 -15.24062 -14.86539 -14.32412 -14.10330 -13.91539 -13.28282 -12.95196 -12.81998 -12.44086 -12.22391 -12.20659 -11.67361 -11.44709 -11.07659 -10.98219 -10.93030 -10.77558 -10.40630 -9.99178 -9.91595 -9.60776 -9.25508 -9.13620 -8.66318 -7.74855 -7.27118 -6.13880 -4.15796 2.46879 3.24588 3.33211 3.34707 4.35121 4.44853 4.95142 5.07405 5.16581 5.36512 5.42122 5.51833 5.67324 5.74392 5.75823 5.86550 5.99077 6.01873 6.11691 6.13352 6.23441 6.29934 6.33351 6.40460 6.49734 6.71416 6.82149 6.85304 6.98038 7.06528 7.48735 7.64142 7.74708 8.18596 8.45468 8.59329 8.95312 9.49050 10.98870 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.026935 B = 0.009848 C = 0.008543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.276687 B = 2842.521663 C = 3276.560781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.132 4.132 3 C 0.073 3.927 4 N -0.531 5.531 5 C 0.072 3.928 6 C 0.188 3.812 7 H 0.007 0.993 8 C -0.501 4.501 9 H 0.076 0.924 10 C 0.074 3.926 11 N -0.893 5.893 12 Si 0.882 3.118 13 H -0.276 1.276 14 H -0.289 1.289 15 H -0.272 1.272 16 N -0.685 5.685 17 C 0.065 3.935 18 C 0.110 3.890 19 C -0.168 4.168 20 C -0.140 4.140 21 H 0.094 0.906 22 H 0.091 0.909 23 H 0.110 0.890 24 H 0.076 0.924 25 H 0.040 0.960 26 H 0.038 0.962 27 H 0.070 0.930 28 H 0.265 0.735 29 H 0.334 0.666 30 H 0.022 0.978 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.696 9.035 -3.385 14.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.150 4.150 3 C -0.055 4.055 4 N -0.255 5.255 5 C -0.055 4.055 6 C 0.080 3.920 7 H 0.025 0.975 8 C -0.540 4.540 9 H 0.094 0.906 10 C -0.129 4.129 11 N -0.531 5.531 12 Si 0.710 3.290 13 H -0.202 1.202 14 H -0.216 1.216 15 H -0.197 1.197 16 N -0.318 5.318 17 C -0.066 4.066 18 C 0.020 3.980 19 C -0.227 4.227 20 C -0.198 4.198 21 H 0.112 0.888 22 H 0.110 0.890 23 H 0.128 0.872 24 H 0.094 0.906 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.153 0.847 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.763 8.893 -3.535 14.403 hybrid contribution -0.168 0.008 1.158 1.170 sum -10.931 8.901 -2.377 14.296 Atomic orbital electron populations 1.23677 0.95762 1.01273 1.03187 1.22985 0.95839 0.98707 0.97485 1.21319 0.95530 0.95608 0.92996 1.62538 1.18237 1.04754 1.39956 1.22297 0.90639 0.93488 0.99111 1.19536 0.93098 0.86671 0.92651 0.97537 1.20902 1.18077 1.18273 0.96743 0.90585 1.25098 0.94407 0.94692 0.98696 1.69896 1.25582 1.26355 1.31246 0.86802 0.79119 0.78806 0.84243 1.20178 1.21559 1.19710 1.61204 1.16748 1.06352 1.47465 1.21925 0.93312 0.96502 0.94814 1.21014 0.92966 0.88568 0.95418 1.22321 1.01008 1.02299 0.97073 1.21912 0.98168 0.97920 1.01770 0.88768 0.89045 0.87191 0.90589 0.94187 0.94411 0.91155 0.92520 0.84747 0.95983 0.92064 0.93998 0.92955 0.90281 0.92232 0.92542 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.51 14.32 29.01 0.42 -2.09 16 2 C -0.13 -1.92 9.19 -36.03 -0.33 -2.25 16 3 C 0.07 1.10 4.56 -4.98 -0.02 1.07 16 4 N -0.53 -9.50 4.47 -220.25 -0.98 -10.49 16 5 C 0.07 1.51 4.32 -3.76 -0.02 1.49 16 6 C 0.19 4.45 2.19 -68.81 -0.15 4.30 16 7 H 0.01 0.18 5.41 -51.93 -0.28 -0.11 16 8 C -0.50 -13.83 9.13 -34.44 -0.31 -14.14 16 9 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 10 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 11 N -0.89 -26.78 13.96 55.43 0.77 -26.01 16 12 Si 0.88 21.55 26.89 -169.99 -4.57 16.97 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.27 -6.42 6.91 56.52 0.39 -6.03 16 16 N -0.68 -14.81 5.85 -107.81 -0.63 -15.44 16 17 C 0.06 1.19 5.43 -3.76 -0.02 1.17 16 18 C 0.11 1.82 0.68 -131.54 -0.09 1.73 16 19 C -0.17 -2.68 7.65 37.16 0.28 -2.40 16 20 C -0.14 -1.87 8.18 37.16 0.30 -1.57 16 21 H 0.09 1.06 8.06 -52.49 -0.42 0.63 16 22 H 0.09 1.03 7.84 -52.49 -0.41 0.62 16 23 H 0.11 1.68 6.89 -52.49 -0.36 1.32 16 24 H 0.08 1.03 5.39 -51.92 -0.28 0.75 16 25 H 0.04 0.61 6.90 -51.93 -0.36 0.25 16 26 H 0.04 0.81 6.35 -51.93 -0.33 0.48 16 27 H 0.07 1.48 6.53 -51.93 -0.34 1.14 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.33 7.39 8.78 -39.29 -0.34 7.04 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.04 0.60 6.70 -51.93 -0.35 0.26 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.49 5.94 -51.93 -0.31 1.18 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.67 6.15 -51.93 -0.32 0.35 16 LS Contribution 281.42 15.07 4.24 4.24 Total: -1.00 -28.95 281.42 -7.00 -35.94 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.79 Total: 5.48 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -0.04 Total: -10.69 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.84 Total: -51.94 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.57 Total: 16.97 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.95 -7.00 -35.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219411386.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.728 kcal (2) G-P(sol) polarization free energy of solvation -28.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds