Wall clock time and date at job start Mon Mar 30 2020 02:42:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31003 * 1
3 3 C 1.50696 * 120.00524 * 2 1
4 4 N 1.46896 * 109.47406 * 124.99889 * 3 2 1
5 5 C 1.46958 * 110.99618 * 66.04801 * 4 3 2
6 6 C 1.53054 * 109.36425 * 183.18917 * 5 4 3
7 7 H 1.08997 * 109.49014 * 61.56956 * 6 5 4
8 8 C 1.50706 * 109.48860 * 181.63224 * 6 5 4
9 9 H 1.08002 * 119.99803 * 34.99531 * 8 6 5
10 10 C 1.37870 * 120.00288 * 214.99259 * 8 6 5
11 11 N 1.31508 * 120.00257 * 182.18326 * 10 8 6
12 12 Si 1.86808 * 119.99833 * 2.17723 * 10 8 6
13 13 H 1.48506 * 109.46592 * 85.12697 * 12 10 8
14 14 H 1.48494 * 109.47136 * 205.12788 * 12 10 8
15 15 H 1.48495 * 109.47029 * 325.13211 * 12 10 8
16 16 N 1.46950 * 109.36581 * 301.60009 * 6 5 4
17 17 C 1.46958 * 110.88090 * 59.31967 * 16 6 5
18 18 C 1.46950 * 111.00388 * 189.84823 * 4 3 2
19 19 C 1.53000 * 109.49092 * 296.78307 * 18 4 3
20 20 C 1.53003 * 109.48856 * 56.82576 * 18 4 3
21 21 H 1.07998 * 120.00312 * 180.02562 * 1 2 3
22 22 H 1.07999 * 119.99525 * 359.97438 * 1 2 3
23 23 H 1.07999 * 119.99525 * 180.02562 * 2 1 3
24 24 H 1.09008 * 109.47067 * 5.00179 * 3 2 1
25 25 H 1.08999 * 109.47374 * 245.00866 * 3 2 1
26 26 H 1.09001 * 109.48595 * 63.22391 * 5 4 3
27 27 H 1.09004 * 109.51052 * 303.17069 * 5 4 3
28 28 H 0.97005 * 119.99933 * 179.97438 * 11 10 8
29 29 H 1.00897 * 111.00381 * 183.19217 * 16 6 5
30 30 H 1.09001 * 109.48595 * 60.64652 * 17 16 6
31 31 H 1.09003 * 109.49237 * 180.71100 * 17 16 6
32 32 H 1.08992 * 109.47192 * 59.99796 * 19 18 4
33 33 H 1.09005 * 109.47211 * 180.02562 * 19 18 4
34 34 H 1.09006 * 109.46964 * 299.99586 * 19 18 4
35 35 H 1.08996 * 109.46876 * 59.99897 * 20 18 4
36 36 H 1.09003 * 109.46998 * 179.97438 * 20 18 4
37 37 H 1.08990 * 109.47212 * 299.99841 * 20 18 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0636 1.3050 0.0000
4 7 2.9964 1.3319 1.1345
5 6 4.0498 0.3198 0.9741
6 6 4.9520 0.3260 2.2105
7 1 4.3636 0.0690 3.0913
8 6 6.0570 -0.6830 2.0316
9 1 6.4802 -0.8525 1.0525
10 6 6.5278 -1.3896 3.1178
11 7 7.5211 -2.2387 2.9696
12 14 5.7549 -1.1408 4.8002
13 1 4.5622 -2.0158 4.9312
14 1 6.7416 -1.4876 5.8544
15 1 5.3464 0.2788 4.9522
16 7 5.5335 1.6646 2.3827
17 6 4.4800 2.6766 2.5431
18 6 3.5779 2.6704 1.3067
19 6 4.4038 3.0311 0.0704
20 6 2.4559 3.6948 1.4878
21 1 -0.5400 -0.9353 0.0004
22 1 -0.5399 0.9353 0.0004
23 1 1.8499 -0.9353 -0.0004
24 1 1.3587 2.1316 0.0896
25 1 2.6213 1.4026 -0.9314
26 1 4.6436 0.5501 0.0895
27 1 3.5950 -0.6643 0.8607
28 1 7.8525 -2.7356 3.7339
29 1 6.1742 1.6830 3.1619
30 1 3.8862 2.4463 3.4277
31 1 4.9351 3.6606 2.6563
32 1 3.7615 3.0248 -0.8102
33 1 4.8353 4.0239 0.1986
34 1 5.2035 2.3016 -0.0579
35 1 1.8682 3.4380 2.3690
36 1 2.8876 4.6875 1.6160
37 1 1.8129 3.6888 0.6078
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000219411386.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:42:48
Heat of formation + Delta-G solvation = 10.408479 kcal
Electronic energy + Delta-G solvation = -16495.583894 eV
Core-core repulsion = 14079.496173 eV
Total energy + Delta-G solvation = -2416.087721 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 224.158 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-40.86978 -36.61660 -35.34409 -33.92486 -32.97422 -29.64393 -28.35225 -27.39460
-25.66786 -24.54457 -22.08562 -20.54390 -19.34764 -18.91136 -17.38684 -16.50377
-16.15975 -16.10785 -15.64502 -15.48248 -14.78212 -14.61529 -14.32274 -14.02436
-13.74002 -13.38630 -12.89304 -12.84557 -12.71940 -12.54796 -12.37208 -11.98430
-11.94229 -11.73127 -11.56185 -11.35644 -11.02985 -10.81869 -10.29633 -9.20630
-8.95943 -8.33749 -6.40512 1.29327 1.31855 1.41309 1.41522 2.28038
2.92857 3.13230 3.72028 3.89328 3.99219 4.20447 4.27496 4.31736
4.42743 4.52984 4.56882 4.72968 4.76248 4.80479 4.82815 4.93384
4.96952 5.01143 5.11988 5.13785 5.17481 5.29437 5.53844 5.57776
5.77398 5.90239 6.16483 6.21048 6.32284 6.56441 6.64137 6.81669
7.28404 8.83002
Molecular weight = 224.16amu
Principal moments of inertia in cm(-1)
A = 0.026935 B = 0.009848 C = 0.008543
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1039.276687 B = 2842.521663 C = 3276.560781
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C -0.166 4.166
3 C 0.077 3.923
4 N -0.536 5.536
5 C 0.084 3.916
6 C 0.195 3.805
7 H -0.003 1.003
8 C -0.505 4.505
9 H 0.031 0.969
10 C 0.021 3.979
11 N -0.941 5.941
12 Si 0.951 3.049
13 H -0.273 1.273
14 H -0.284 1.284
15 H -0.257 1.257
16 N -0.692 5.692
17 C 0.063 3.937
18 C 0.103 3.897
19 C -0.161 4.161
20 C -0.131 4.131
21 H 0.106 0.894
22 H 0.112 0.888
23 H 0.090 0.910
24 H 0.101 0.899
25 H 0.036 0.964
26 H 0.022 0.978
27 H 0.059 0.941
28 H 0.268 0.732
29 H 0.329 0.671
30 H 0.016 0.984
31 H 0.087 0.913
32 H 0.056 0.944
33 H 0.068 0.932
34 H 0.042 0.958
35 H 0.057 0.943
36 H 0.077 0.923
37 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.295 11.326 -2.767 17.683
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.185 4.185
3 C -0.049 4.049
4 N -0.261 5.261
5 C -0.044 4.044
6 C 0.087 3.913
7 H 0.014 0.986
8 C -0.545 4.545
9 H 0.050 0.950
10 C -0.178 4.178
11 N -0.580 5.580
12 Si 0.775 3.225
13 H -0.198 1.198
14 H -0.210 1.210
15 H -0.182 1.182
16 N -0.324 5.324
17 C -0.067 4.067
18 C 0.014 3.986
19 C -0.220 4.220
20 C -0.189 4.189
21 H 0.125 0.875
22 H 0.130 0.870
23 H 0.109 0.891
24 H 0.119 0.881
25 H 0.054 0.946
26 H 0.040 0.960
27 H 0.078 0.922
28 H 0.077 0.923
29 H 0.147 0.853
30 H 0.035 0.965
31 H 0.105 0.895
32 H 0.075 0.925
33 H 0.087 0.913
34 H 0.061 0.939
35 H 0.077 0.923
36 H 0.095 0.905
37 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -13.379 11.209 -2.935 17.699
hybrid contribution 0.612 -0.686 0.861 1.259
sum -12.767 10.524 -2.074 16.675
Atomic orbital electron populations
1.23927 0.94894 1.02854 0.99463 1.22904 0.96731 0.97872 1.00948
1.21368 0.95121 0.96771 0.91655 1.62499 1.17235 1.04768 1.41562
1.21946 0.90995 0.94406 0.97035 1.19326 0.91839 0.86759 0.93398
0.98593 1.21072 1.18891 1.19620 0.94904 0.95036 1.25891 0.94780
0.94328 1.02779 1.70037 1.27480 1.27899 1.32619 0.85704 0.78147
0.79424 0.79176 1.19815 1.20975 1.18173 1.61012 1.17912 1.05982
1.47461 1.22111 0.92647 0.96325 0.95635 1.21206 0.94053 0.88737
0.94623 1.22227 1.00145 1.02003 0.97579 1.21851 0.97006 0.97549
1.02479 0.87541 0.87005 0.89144 0.88130 0.94570 0.95965 0.92227
0.92315 0.85340 0.96533 0.89496 0.92479 0.91262 0.93929 0.92342
0.90458 0.91100
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.79 14.32 67.78 0.97 -2.82 16
2 C -0.17 -4.59 9.19 25.64 0.24 -4.35 16
3 C 0.08 2.17 4.56 85.56 0.39 2.56 16
4 N -0.54 -18.44 4.47 -850.73 -3.80 -22.24 16
5 C 0.08 3.60 4.32 86.31 0.37 3.98 16
6 C 0.19 9.37 2.19 44.18 0.10 9.47 16
7 H 0.00 -0.17 5.41 -2.39 -0.01 -0.19 16
8 C -0.51 -29.17 9.13 25.60 0.23 -28.94 16
9 H 0.03 2.04 8.06 -2.91 -0.02 2.02 16
10 C 0.02 1.23 5.47 84.65 0.46 1.69 16
11 N -0.94 -58.46 13.96 21.44 0.30 -58.16 16
12 Si 0.95 45.03 26.89 68.60 1.84 46.87 16
13 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16
14 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16
15 H -0.26 -11.47 6.91 99.48 0.69 -10.78 16
16 N -0.69 -29.73 5.85 -495.00 -2.90 -32.62 16
17 C 0.06 2.15 5.43 86.31 0.47 2.62 16
18 C 0.10 3.15 0.68 3.54 0.00 3.15 16
19 C -0.16 -4.80 7.65 71.98 0.55 -4.25 16
20 C -0.13 -2.92 8.18 71.98 0.59 -2.33 16
21 H 0.11 2.06 8.06 -2.91 -0.02 2.03 16
22 H 0.11 2.00 7.84 -2.91 -0.02 1.98 16
23 H 0.09 2.82 6.89 -2.91 -0.02 2.80 16
24 H 0.10 2.31 5.39 -2.38 -0.01 2.30 16
25 H 0.04 1.04 6.90 -2.39 -0.02 1.02 16
26 H 0.02 1.00 6.35 -2.39 -0.02 0.99 16
27 H 0.06 2.62 6.53 -2.39 -0.02 2.60 16
28 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16
29 H 0.33 14.44 8.78 -89.70 -0.79 13.65 16
30 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16
31 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16
32 H 0.06 1.51 6.70 -2.39 -0.02 1.49 16
33 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16
34 H 0.04 1.59 5.94 -2.38 -0.01 1.57 16
35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16
36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16
37 H 0.07 1.36 6.15 -2.39 -0.01 1.35 16
Total: -1.00 -64.65 281.42 0.06 -64.59
By element:
Atomic # 1 Polarization: 20.56 SS G_CDS: 0.24 Total: 20.80 kcal
Atomic # 6 Polarization: -23.61 SS G_CDS: 4.37 Total: -19.24 kcal
Atomic # 7 Polarization: -106.62 SS G_CDS: -6.40 Total: -113.02 kcal
Atomic # 14 Polarization: 45.03 SS G_CDS: 1.84 Total: 46.87 kcal
Total: -64.65 0.06 -64.59 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000219411386.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.994 kcal
(2) G-P(sol) polarization free energy of solvation -64.645 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.348 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.060 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.585 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.408 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds