Wall clock time and date at job start Mon Mar 30 2020 02:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 120.00524 * 2 1 4 4 N 1.46896 * 109.47406 * 124.99889 * 3 2 1 5 5 C 1.46958 * 110.99618 * 66.04801 * 4 3 2 6 6 C 1.53054 * 109.36425 * 183.18917 * 5 4 3 7 7 H 1.08997 * 109.49014 * 61.56956 * 6 5 4 8 8 C 1.50706 * 109.48860 * 181.63224 * 6 5 4 9 9 H 1.08002 * 119.99803 * 34.99531 * 8 6 5 10 10 C 1.37870 * 120.00288 * 214.99259 * 8 6 5 11 11 N 1.31508 * 120.00257 * 182.18326 * 10 8 6 12 12 Si 1.86808 * 119.99833 * 2.17723 * 10 8 6 13 13 H 1.48506 * 109.46592 * 85.12697 * 12 10 8 14 14 H 1.48494 * 109.47136 * 205.12788 * 12 10 8 15 15 H 1.48495 * 109.47029 * 325.13211 * 12 10 8 16 16 N 1.46950 * 109.36581 * 301.60009 * 6 5 4 17 17 C 1.46958 * 110.88090 * 59.31967 * 16 6 5 18 18 C 1.46950 * 111.00388 * 189.84823 * 4 3 2 19 19 C 1.53000 * 109.49092 * 296.78307 * 18 4 3 20 20 C 1.53003 * 109.48856 * 56.82576 * 18 4 3 21 21 H 1.07998 * 120.00312 * 180.02562 * 1 2 3 22 22 H 1.07999 * 119.99525 * 359.97438 * 1 2 3 23 23 H 1.07999 * 119.99525 * 180.02562 * 2 1 3 24 24 H 1.09008 * 109.47067 * 5.00179 * 3 2 1 25 25 H 1.08999 * 109.47374 * 245.00866 * 3 2 1 26 26 H 1.09001 * 109.48595 * 63.22391 * 5 4 3 27 27 H 1.09004 * 109.51052 * 303.17069 * 5 4 3 28 28 H 0.97005 * 119.99933 * 179.97438 * 11 10 8 29 29 H 1.00897 * 111.00381 * 183.19217 * 16 6 5 30 30 H 1.09001 * 109.48595 * 60.64652 * 17 16 6 31 31 H 1.09003 * 109.49237 * 180.71100 * 17 16 6 32 32 H 1.08992 * 109.47192 * 59.99796 * 19 18 4 33 33 H 1.09005 * 109.47211 * 180.02562 * 19 18 4 34 34 H 1.09006 * 109.46964 * 299.99586 * 19 18 4 35 35 H 1.08996 * 109.46876 * 59.99897 * 20 18 4 36 36 H 1.09003 * 109.46998 * 179.97438 * 20 18 4 37 37 H 1.08990 * 109.47212 * 299.99841 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9964 1.3319 1.1345 5 6 4.0498 0.3198 0.9741 6 6 4.9520 0.3260 2.2105 7 1 4.3636 0.0690 3.0913 8 6 6.0570 -0.6830 2.0316 9 1 6.4802 -0.8525 1.0525 10 6 6.5278 -1.3896 3.1178 11 7 7.5211 -2.2387 2.9696 12 14 5.7549 -1.1408 4.8002 13 1 4.5622 -2.0158 4.9312 14 1 6.7416 -1.4876 5.8544 15 1 5.3464 0.2788 4.9522 16 7 5.5335 1.6646 2.3827 17 6 4.4800 2.6766 2.5431 18 6 3.5779 2.6704 1.3067 19 6 4.4038 3.0311 0.0704 20 6 2.4559 3.6948 1.4878 21 1 -0.5400 -0.9353 0.0004 22 1 -0.5399 0.9353 0.0004 23 1 1.8499 -0.9353 -0.0004 24 1 1.3587 2.1316 0.0896 25 1 2.6213 1.4026 -0.9314 26 1 4.6436 0.5501 0.0895 27 1 3.5950 -0.6643 0.8607 28 1 7.8525 -2.7356 3.7339 29 1 6.1742 1.6830 3.1619 30 1 3.8862 2.4463 3.4277 31 1 4.9351 3.6606 2.6563 32 1 3.7615 3.0248 -0.8102 33 1 4.8353 4.0239 0.1986 34 1 5.2035 2.3016 -0.0579 35 1 1.8682 3.4380 2.3690 36 1 2.8876 4.6875 1.6160 37 1 1.8129 3.6888 0.6078 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219411386.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:48 Heat of formation + Delta-G solvation = 10.408479 kcal Electronic energy + Delta-G solvation = -16495.583894 eV Core-core repulsion = 14079.496173 eV Total energy + Delta-G solvation = -2416.087721 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.86978 -36.61660 -35.34409 -33.92486 -32.97422 -29.64393 -28.35225 -27.39460 -25.66786 -24.54457 -22.08562 -20.54390 -19.34764 -18.91136 -17.38684 -16.50377 -16.15975 -16.10785 -15.64502 -15.48248 -14.78212 -14.61529 -14.32274 -14.02436 -13.74002 -13.38630 -12.89304 -12.84557 -12.71940 -12.54796 -12.37208 -11.98430 -11.94229 -11.73127 -11.56185 -11.35644 -11.02985 -10.81869 -10.29633 -9.20630 -8.95943 -8.33749 -6.40512 1.29327 1.31855 1.41309 1.41522 2.28038 2.92857 3.13230 3.72028 3.89328 3.99219 4.20447 4.27496 4.31736 4.42743 4.52984 4.56882 4.72968 4.76248 4.80479 4.82815 4.93384 4.96952 5.01143 5.11988 5.13785 5.17481 5.29437 5.53844 5.57776 5.77398 5.90239 6.16483 6.21048 6.32284 6.56441 6.64137 6.81669 7.28404 8.83002 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.026935 B = 0.009848 C = 0.008543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.276687 B = 2842.521663 C = 3276.560781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.166 4.166 3 C 0.077 3.923 4 N -0.536 5.536 5 C 0.084 3.916 6 C 0.195 3.805 7 H -0.003 1.003 8 C -0.505 4.505 9 H 0.031 0.969 10 C 0.021 3.979 11 N -0.941 5.941 12 Si 0.951 3.049 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.257 1.257 16 N -0.692 5.692 17 C 0.063 3.937 18 C 0.103 3.897 19 C -0.161 4.161 20 C -0.131 4.131 21 H 0.106 0.894 22 H 0.112 0.888 23 H 0.090 0.910 24 H 0.101 0.899 25 H 0.036 0.964 26 H 0.022 0.978 27 H 0.059 0.941 28 H 0.268 0.732 29 H 0.329 0.671 30 H 0.016 0.984 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.042 0.958 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.295 11.326 -2.767 17.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.185 4.185 3 C -0.049 4.049 4 N -0.261 5.261 5 C -0.044 4.044 6 C 0.087 3.913 7 H 0.014 0.986 8 C -0.545 4.545 9 H 0.050 0.950 10 C -0.178 4.178 11 N -0.580 5.580 12 Si 0.775 3.225 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.182 1.182 16 N -0.324 5.324 17 C -0.067 4.067 18 C 0.014 3.986 19 C -0.220 4.220 20 C -0.189 4.189 21 H 0.125 0.875 22 H 0.130 0.870 23 H 0.109 0.891 24 H 0.119 0.881 25 H 0.054 0.946 26 H 0.040 0.960 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.147 0.853 30 H 0.035 0.965 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.379 11.209 -2.935 17.699 hybrid contribution 0.612 -0.686 0.861 1.259 sum -12.767 10.524 -2.074 16.675 Atomic orbital electron populations 1.23927 0.94894 1.02854 0.99463 1.22904 0.96731 0.97872 1.00948 1.21368 0.95121 0.96771 0.91655 1.62499 1.17235 1.04768 1.41562 1.21946 0.90995 0.94406 0.97035 1.19326 0.91839 0.86759 0.93398 0.98593 1.21072 1.18891 1.19620 0.94904 0.95036 1.25891 0.94780 0.94328 1.02779 1.70037 1.27480 1.27899 1.32619 0.85704 0.78147 0.79424 0.79176 1.19815 1.20975 1.18173 1.61012 1.17912 1.05982 1.47461 1.22111 0.92647 0.96325 0.95635 1.21206 0.94053 0.88737 0.94623 1.22227 1.00145 1.02003 0.97579 1.21851 0.97006 0.97549 1.02479 0.87541 0.87005 0.89144 0.88130 0.94570 0.95965 0.92227 0.92315 0.85340 0.96533 0.89496 0.92479 0.91262 0.93929 0.92342 0.90458 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.79 14.32 67.78 0.97 -2.82 16 2 C -0.17 -4.59 9.19 25.64 0.24 -4.35 16 3 C 0.08 2.17 4.56 85.56 0.39 2.56 16 4 N -0.54 -18.44 4.47 -850.73 -3.80 -22.24 16 5 C 0.08 3.60 4.32 86.31 0.37 3.98 16 6 C 0.19 9.37 2.19 44.18 0.10 9.47 16 7 H 0.00 -0.17 5.41 -2.39 -0.01 -0.19 16 8 C -0.51 -29.17 9.13 25.60 0.23 -28.94 16 9 H 0.03 2.04 8.06 -2.91 -0.02 2.02 16 10 C 0.02 1.23 5.47 84.65 0.46 1.69 16 11 N -0.94 -58.46 13.96 21.44 0.30 -58.16 16 12 Si 0.95 45.03 26.89 68.60 1.84 46.87 16 13 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 14 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 15 H -0.26 -11.47 6.91 99.48 0.69 -10.78 16 16 N -0.69 -29.73 5.85 -495.00 -2.90 -32.62 16 17 C 0.06 2.15 5.43 86.31 0.47 2.62 16 18 C 0.10 3.15 0.68 3.54 0.00 3.15 16 19 C -0.16 -4.80 7.65 71.98 0.55 -4.25 16 20 C -0.13 -2.92 8.18 71.98 0.59 -2.33 16 21 H 0.11 2.06 8.06 -2.91 -0.02 2.03 16 22 H 0.11 2.00 7.84 -2.91 -0.02 1.98 16 23 H 0.09 2.82 6.89 -2.91 -0.02 2.80 16 24 H 0.10 2.31 5.39 -2.38 -0.01 2.30 16 25 H 0.04 1.04 6.90 -2.39 -0.02 1.02 16 26 H 0.02 1.00 6.35 -2.39 -0.02 0.99 16 27 H 0.06 2.62 6.53 -2.39 -0.02 2.60 16 28 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 29 H 0.33 14.44 8.78 -89.70 -0.79 13.65 16 30 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.06 1.51 6.70 -2.39 -0.02 1.49 16 33 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.04 1.59 5.94 -2.38 -0.01 1.57 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.07 1.36 6.15 -2.39 -0.01 1.35 16 Total: -1.00 -64.65 281.42 0.06 -64.59 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.24 Total: 20.80 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: 4.37 Total: -19.24 kcal Atomic # 7 Polarization: -106.62 SS G_CDS: -6.40 Total: -113.02 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.84 Total: 46.87 kcal Total: -64.65 0.06 -64.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219411386.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.994 kcal (2) G-P(sol) polarization free energy of solvation -64.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds