Wall clock time and date at job start Mon Mar 30 2020 02:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.48817 * 2 1 4 4 C 1.53044 * 109.49089 * 239.93767 * 2 1 3 5 5 N 1.46955 * 109.36787 * 181.63468 * 4 2 1 6 6 C 1.46896 * 111.00182 * 183.18785 * 5 4 2 7 7 C 1.53005 * 117.49808 * 243.74068 * 6 5 4 8 8 C 1.53004 * 117.50172 * 175.08440 * 6 5 4 9 9 C 1.46955 * 110.90161 * 59.30333 * 5 4 2 10 10 C 1.53056 * 109.36241 * 300.71775 * 9 5 4 11 11 H 1.08999 * 109.48764 * 298.38712 * 10 9 5 12 12 C 1.50695 * 109.48511 * 178.34563 * 10 9 5 13 13 H 1.08004 * 120.00546 * 0.31968 * 12 10 9 14 14 C 1.37885 * 119.99721 * 180.02562 * 12 10 9 15 15 N 1.31514 * 120.00035 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99853 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46986 * 90.00256 * 16 14 12 18 18 H 1.48496 * 109.47029 * 210.00273 * 16 14 12 19 19 H 1.48499 * 109.47352 * 330.00102 * 16 14 12 20 20 N 1.46954 * 109.48829 * 120.04441 * 2 1 3 21 21 H 1.08995 * 109.47210 * 299.95657 * 1 2 3 22 22 H 1.09001 * 109.47176 * 59.95355 * 1 2 3 23 23 H 1.08995 * 109.47183 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47380 * 180.02562 * 3 2 1 25 25 H 1.09003 * 109.47307 * 300.04561 * 3 2 1 26 26 H 1.08996 * 109.47184 * 60.04454 * 3 2 1 27 27 H 1.09003 * 109.48762 * 301.59667 * 4 2 1 28 28 H 1.08996 * 109.49251 * 61.63731 * 4 2 1 29 29 H 1.09003 * 115.55581 * 29.41455 * 6 5 4 30 30 H 1.09000 * 117.49739 * 0.02562 * 7 6 5 31 31 H 1.09005 * 117.49853 * 145.02013 * 7 6 5 32 32 H 1.08999 * 117.49904 * 214.97914 * 8 6 5 33 33 H 1.09001 * 117.49652 * 359.97438 * 8 6 5 34 34 H 1.08997 * 109.50741 * 180.73626 * 9 5 4 35 35 H 1.08996 * 109.46931 * 60.67066 * 9 5 4 36 36 H 0.97000 * 119.99706 * 179.97438 * 15 14 12 37 37 H 1.00897 * 111.00272 * 55.41688 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4424 0.0000 4 6 2.0407 -0.7227 -1.2487 5 7 3.5097 -0.7555 -1.2263 6 6 4.0411 -1.3755 -2.4473 7 6 4.8237 -2.6813 -2.2935 8 6 5.5599 -1.3827 -2.6326 9 6 4.0004 -1.4487 -0.0271 10 6 3.4893 -0.7262 1.2216 11 1 3.8755 0.2930 1.2357 12 6 3.9573 -1.4582 2.4529 13 1 4.5634 -2.3468 2.3553 14 6 3.6167 -0.9902 3.7044 15 7 2.8830 0.0948 3.8234 16 14 4.1961 -1.8980 5.2307 17 1 5.5111 -1.3571 5.6590 18 1 3.2060 -1.7139 6.3219 19 1 4.3320 -3.3447 4.9245 20 7 2.0203 -0.6936 1.1992 21 1 -0.3633 0.5131 0.8903 22 1 -0.3633 0.5146 -0.8896 23 1 -0.3633 -1.0276 -0.0005 24 1 3.1305 1.4421 -0.0005 25 1 1.6766 1.9566 -0.8896 26 1 1.6779 1.9561 0.8903 27 1 1.6545 -1.7420 -1.2624 28 1 1.7019 -0.1935 -2.1393 29 1 3.4259 -1.2597 -3.3396 30 1 4.9439 -3.0803 -1.2863 31 1 4.7236 -3.4243 -3.0848 32 1 5.9437 -1.2719 -3.6468 33 1 6.1647 -0.9270 -1.8487 34 1 5.0904 -1.4484 -0.0269 35 1 3.6368 -2.4762 -0.0271 36 1 2.6431 0.4238 4.7038 37 1 1.6369 -1.6249 1.2604 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219411554.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:38 Heat of formation + Delta-G solvation = 38.511106 kcal Electronic energy + Delta-G solvation = -16585.474005 eV Core-core repulsion = 14170.604906 eV Total energy + Delta-G solvation = -2414.869099 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.32276 -36.63138 -33.25722 -32.12565 -30.62147 -26.93995 -26.48794 -25.19065 -23.86116 -22.14059 -21.00136 -19.41879 -18.01036 -16.57360 -15.84345 -14.89139 -14.48747 -14.42949 -13.88094 -13.45543 -13.18094 -13.06554 -12.16158 -11.94783 -11.48006 -11.38922 -11.27124 -11.09553 -11.00192 -10.88112 -10.64561 -10.61388 -10.37206 -10.26073 -10.02258 -9.77833 -9.50982 -8.88486 -8.35304 -7.60263 -6.73393 -5.84545 -3.98961 3.34942 3.42255 3.44361 4.02769 4.41240 4.54284 5.15190 5.18767 5.21451 5.33262 5.54598 5.65613 5.74263 5.85875 5.88708 5.91927 6.06971 6.09720 6.21509 6.28826 6.34105 6.41045 6.42279 6.61662 6.68516 6.74427 6.87160 7.02438 7.23721 7.43761 7.68659 7.79095 7.94802 8.27896 8.65669 8.99129 9.16718 9.69128 11.19332 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.024767 B = 0.010475 C = 0.008038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.245750 B = 2672.480263 C = 3482.717429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.106 3.894 3 C -0.118 4.118 4 C 0.034 3.966 5 N -0.502 5.502 6 C 0.023 3.977 7 C -0.224 4.224 8 C -0.173 4.173 9 C 0.027 3.973 10 C 0.226 3.774 11 H 0.051 0.949 12 C -0.540 4.540 13 H 0.051 0.949 14 C 0.086 3.914 15 N -0.842 5.842 16 Si 0.881 3.119 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.277 1.277 20 N -0.637 5.637 21 H 0.064 0.936 22 H 0.045 0.955 23 H 0.043 0.957 24 H 0.065 0.935 25 H 0.033 0.967 26 H 0.056 0.944 27 H 0.022 0.978 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.023 0.977 36 H 0.255 0.745 37 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.115 -1.471 -10.217 10.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.013 3.987 3 C -0.175 4.175 4 C -0.096 4.096 5 N -0.223 5.223 6 C -0.087 4.087 7 C -0.263 4.263 8 C -0.211 4.211 9 C -0.102 4.102 10 C 0.118 3.882 11 H 0.069 0.931 12 C -0.580 4.580 13 H 0.070 0.930 14 C -0.122 4.122 15 N -0.476 5.476 16 Si 0.709 3.291 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.202 1.202 20 N -0.265 5.265 21 H 0.083 0.917 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.084 0.916 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.040 0.960 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.120 0.880 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.065 0.935 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.114 -0.254 -9.634 9.701 hybrid contribution 0.265 -2.147 0.016 2.163 sum -0.849 -2.401 -9.618 9.949 Atomic orbital electron populations 1.21758 0.95280 1.00781 1.01217 1.21008 0.93408 0.95677 0.88570 1.21608 1.02194 0.94216 0.99500 1.22922 0.87577 0.98521 1.00569 1.62035 1.08012 1.51480 1.00779 1.22684 0.93740 0.96996 0.95273 1.23535 1.07543 0.91986 1.03219 1.22998 0.95222 1.00772 1.02108 1.23225 0.99930 0.95648 0.91400 1.19224 0.83776 0.96511 0.88718 0.93076 1.20892 1.34346 1.12363 0.90362 0.93032 1.24917 0.94266 0.94572 0.98397 1.70113 1.34146 1.20859 1.22522 0.86805 0.78413 0.80314 0.83536 1.20843 1.21331 1.20165 1.61127 1.10308 1.21198 1.33895 0.91686 0.93580 0.93763 0.91623 0.94804 0.92522 0.95969 0.92024 0.87531 0.87987 0.89657 0.89188 0.88517 0.91691 0.95923 0.93504 0.86609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.73 37.16 0.32 -1.88 16 2 C 0.11 2.04 0.95 -131.55 -0.12 1.91 16 3 C -0.12 -2.31 8.12 37.16 0.30 -2.00 16 4 C 0.03 0.61 4.27 -3.77 -0.02 0.59 16 5 N -0.50 -9.33 4.24 -226.49 -0.96 -10.29 16 6 C 0.02 0.36 6.12 -67.71 -0.41 -0.05 16 7 C -0.22 -3.31 9.50 -26.69 -0.25 -3.57 16 8 C -0.17 -2.49 9.99 -26.69 -0.27 -2.76 16 9 C 0.03 0.57 3.47 -3.77 -0.01 0.55 16 10 C 0.23 5.53 2.07 -68.81 -0.14 5.39 16 11 H 0.05 1.41 6.35 -51.93 -0.33 1.09 16 12 C -0.54 -14.61 8.69 -34.44 -0.30 -14.91 16 13 H 0.05 1.39 7.74 -52.48 -0.41 0.98 16 14 C 0.09 2.35 5.39 -17.82 -0.10 2.26 16 15 N -0.84 -24.03 12.77 55.43 0.71 -23.32 16 16 Si 0.88 21.10 29.54 -169.99 -5.02 16.08 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 20 N -0.64 -14.66 5.31 -94.12 -0.50 -15.16 16 21 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.06 1.42 5.95 -51.93 -0.31 1.11 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 29 H 0.11 1.51 8.03 -51.93 -0.42 1.09 16 30 H 0.10 1.69 5.89 -51.93 -0.31 1.38 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.10 1.51 7.57 -51.93 -0.39 1.12 16 34 H 0.06 1.39 6.69 -51.93 -0.35 1.04 16 35 H 0.02 0.49 7.19 -51.93 -0.37 0.12 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.32 7.36 8.70 -39.29 -0.34 7.02 16 LS Contribution 286.15 15.07 4.31 4.31 Total: -1.00 -27.58 286.15 -8.62 -36.20 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -6.16 Total: 6.65 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -1.00 Total: -14.46 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.75 Total: -48.77 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.58 -8.62 -36.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219411554.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.710 kcal (2) G-P(sol) polarization free energy of solvation -27.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds