Wall clock time and date at job start Mon Mar 30 2020 02:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.48817 * 2 1 4 4 C 1.53044 * 109.49089 * 239.93767 * 2 1 3 5 5 N 1.46955 * 109.36787 * 181.63468 * 4 2 1 6 6 C 1.46896 * 111.00182 * 183.18785 * 5 4 2 7 7 C 1.53005 * 117.49808 * 243.74068 * 6 5 4 8 8 C 1.53004 * 117.50172 * 175.08440 * 6 5 4 9 9 C 1.46955 * 110.90161 * 59.30333 * 5 4 2 10 10 C 1.53056 * 109.36241 * 300.71775 * 9 5 4 11 11 H 1.08999 * 109.48764 * 298.38712 * 10 9 5 12 12 C 1.50695 * 109.48511 * 178.34563 * 10 9 5 13 13 H 1.08004 * 120.00546 * 0.31968 * 12 10 9 14 14 C 1.37885 * 119.99721 * 180.02562 * 12 10 9 15 15 N 1.31514 * 120.00035 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99853 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46986 * 90.00256 * 16 14 12 18 18 H 1.48496 * 109.47029 * 210.00273 * 16 14 12 19 19 H 1.48499 * 109.47352 * 330.00102 * 16 14 12 20 20 N 1.46954 * 109.48829 * 120.04441 * 2 1 3 21 21 H 1.08995 * 109.47210 * 299.95657 * 1 2 3 22 22 H 1.09001 * 109.47176 * 59.95355 * 1 2 3 23 23 H 1.08995 * 109.47183 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47380 * 180.02562 * 3 2 1 25 25 H 1.09003 * 109.47307 * 300.04561 * 3 2 1 26 26 H 1.08996 * 109.47184 * 60.04454 * 3 2 1 27 27 H 1.09003 * 109.48762 * 301.59667 * 4 2 1 28 28 H 1.08996 * 109.49251 * 61.63731 * 4 2 1 29 29 H 1.09003 * 115.55581 * 29.41455 * 6 5 4 30 30 H 1.09000 * 117.49739 * 0.02562 * 7 6 5 31 31 H 1.09005 * 117.49853 * 145.02013 * 7 6 5 32 32 H 1.08999 * 117.49904 * 214.97914 * 8 6 5 33 33 H 1.09001 * 117.49652 * 359.97438 * 8 6 5 34 34 H 1.08997 * 109.50741 * 180.73626 * 9 5 4 35 35 H 1.08996 * 109.46931 * 60.67066 * 9 5 4 36 36 H 0.97000 * 119.99706 * 179.97438 * 15 14 12 37 37 H 1.00897 * 111.00272 * 55.41688 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4424 0.0000 4 6 2.0407 -0.7227 -1.2487 5 7 3.5097 -0.7555 -1.2263 6 6 4.0411 -1.3755 -2.4473 7 6 4.8237 -2.6813 -2.2935 8 6 5.5599 -1.3827 -2.6326 9 6 4.0004 -1.4487 -0.0271 10 6 3.4893 -0.7262 1.2216 11 1 3.8755 0.2930 1.2357 12 6 3.9573 -1.4582 2.4529 13 1 4.5634 -2.3468 2.3553 14 6 3.6167 -0.9902 3.7044 15 7 2.8830 0.0948 3.8234 16 14 4.1961 -1.8980 5.2307 17 1 5.5111 -1.3571 5.6590 18 1 3.2060 -1.7139 6.3219 19 1 4.3320 -3.3447 4.9245 20 7 2.0203 -0.6936 1.1992 21 1 -0.3633 0.5131 0.8903 22 1 -0.3633 0.5146 -0.8896 23 1 -0.3633 -1.0276 -0.0005 24 1 3.1305 1.4421 -0.0005 25 1 1.6766 1.9566 -0.8896 26 1 1.6779 1.9561 0.8903 27 1 1.6545 -1.7420 -1.2624 28 1 1.7019 -0.1935 -2.1393 29 1 3.4259 -1.2597 -3.3396 30 1 4.9439 -3.0803 -1.2863 31 1 4.7236 -3.4243 -3.0848 32 1 5.9437 -1.2719 -3.6468 33 1 6.1647 -0.9270 -1.8487 34 1 5.0904 -1.4484 -0.0269 35 1 3.6368 -2.4762 -0.0271 36 1 2.6431 0.4238 4.7038 37 1 1.6369 -1.6249 1.2604 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219411554.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:38 Heat of formation + Delta-G solvation = 20.221373 kcal Electronic energy + Delta-G solvation = -16586.267107 eV Core-core repulsion = 14170.604906 eV Total energy + Delta-G solvation = -2415.662202 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.83991 -38.01909 -35.18243 -33.62006 -32.47450 -28.66207 -27.97632 -27.07721 -25.34869 -23.35973 -22.69635 -20.84058 -19.65689 -18.47935 -17.36055 -16.42168 -16.26787 -16.04482 -15.51921 -15.02593 -14.68367 -14.57827 -14.01369 -13.37106 -13.04569 -12.90396 -12.79400 -12.75413 -12.59146 -12.47834 -12.35249 -12.25545 -12.01400 -11.64045 -11.52137 -11.41366 -11.10131 -10.86649 -10.45557 -9.04662 -8.47784 -7.94291 -6.15820 1.43396 1.44863 1.53545 2.46620 2.76277 3.16337 3.25238 3.78926 3.92338 4.03908 4.11306 4.18957 4.27330 4.37367 4.46350 4.54389 4.72626 4.77375 4.77505 4.89373 4.93628 4.96671 5.07721 5.13111 5.20546 5.24483 5.25307 5.50542 5.58255 5.64114 5.75704 6.12859 6.25746 6.34063 6.69947 7.17618 7.18468 7.55921 9.08052 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.024767 B = 0.010475 C = 0.008038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.245750 B = 2672.480263 C = 3482.717429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.099 3.901 3 C -0.108 4.108 4 C 0.041 3.959 5 N -0.513 5.513 6 C 0.009 3.991 7 C -0.220 4.220 8 C -0.165 4.165 9 C 0.049 3.951 10 C 0.231 3.769 11 H 0.012 0.988 12 C -0.558 4.558 13 H 0.045 0.955 14 C 0.040 3.960 15 N -0.872 5.872 16 Si 0.945 3.055 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.272 1.272 20 N -0.653 5.653 21 H 0.048 0.952 22 H 0.077 0.923 23 H 0.051 0.949 24 H 0.038 0.962 25 H 0.066 0.934 26 H 0.032 0.968 27 H 0.023 0.977 28 H 0.090 0.910 29 H 0.133 0.867 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.121 0.879 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.015 0.985 36 H 0.254 0.746 37 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.573 -2.150 -12.068 12.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.007 3.993 3 C -0.166 4.166 4 C -0.089 4.089 5 N -0.234 5.234 6 C -0.100 4.100 7 C -0.258 4.258 8 C -0.203 4.203 9 C -0.081 4.081 10 C 0.122 3.878 11 H 0.030 0.970 12 C -0.597 4.597 13 H 0.064 0.936 14 C -0.164 4.164 15 N -0.507 5.507 16 Si 0.771 3.229 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.197 1.197 20 N -0.282 5.282 21 H 0.067 0.933 22 H 0.096 0.904 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.084 0.916 26 H 0.051 0.949 27 H 0.042 0.958 28 H 0.108 0.892 29 H 0.151 0.849 30 H 0.096 0.904 31 H 0.129 0.871 32 H 0.139 0.861 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.033 0.967 36 H 0.063 0.937 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.566 -0.937 -11.500 11.644 hybrid contribution 0.429 -1.901 0.540 2.023 sum -1.136 -2.839 -10.960 11.378 Atomic orbital electron populations 1.21676 0.92961 1.01579 1.01962 1.21172 0.95209 0.94905 0.88051 1.21506 1.00370 0.94856 0.99842 1.22846 0.86912 0.98617 1.00511 1.61966 1.08777 1.51761 1.00940 1.22888 0.94815 0.97713 0.94573 1.23507 1.07118 0.92388 1.02833 1.23058 0.94140 0.99977 1.03142 1.22770 0.98988 0.94764 0.91577 1.18900 0.84970 0.94249 0.89640 0.97016 1.21239 1.34297 1.12261 0.91880 0.93631 1.25600 0.94415 0.95297 1.01117 1.70244 1.35356 1.22173 1.22955 0.85799 0.77872 0.79211 0.79990 1.20509 1.21088 1.19699 1.60909 1.09302 1.21106 1.36891 0.93306 0.90431 0.92949 0.94288 0.91562 0.94911 0.95830 0.89212 0.84918 0.90367 0.87058 0.86119 0.90521 0.92820 0.96679 0.93688 0.87056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.88 8.73 71.98 0.63 -3.25 16 2 C 0.10 3.71 0.95 3.53 0.00 3.71 16 3 C -0.11 -4.22 8.12 71.98 0.58 -3.63 16 4 C 0.04 1.35 4.27 86.31 0.37 1.72 16 5 N -0.51 -18.51 4.24 -870.49 -3.69 -22.19 16 6 C 0.01 0.27 6.12 44.92 0.27 0.54 16 7 C -0.22 -6.03 9.50 30.62 0.29 -5.74 16 8 C -0.17 -4.40 9.99 30.62 0.31 -4.09 16 9 C 0.05 2.08 3.47 86.31 0.30 2.38 16 10 C 0.23 11.71 2.07 44.18 0.09 11.80 16 11 H 0.01 0.69 6.35 -2.39 -0.02 0.68 16 12 C -0.56 -31.03 8.69 25.60 0.22 -30.80 16 13 H 0.05 2.52 7.74 -2.91 -0.02 2.49 16 14 C 0.04 2.24 5.39 84.66 0.46 2.70 16 15 N -0.87 -51.10 12.77 21.45 0.27 -50.82 16 16 Si 0.95 44.07 29.54 68.60 2.03 46.10 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 18 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 19 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 20 N -0.65 -30.65 5.31 -451.70 -2.40 -33.05 16 21 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 22 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.04 1.71 5.95 -2.38 -0.01 1.69 16 25 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.02 0.78 8.14 -2.39 -0.02 0.77 16 28 H 0.09 2.51 8.12 -2.39 -0.02 2.50 16 29 H 0.13 3.18 8.03 -2.39 -0.02 3.17 16 30 H 0.08 2.54 5.89 -2.39 -0.01 2.53 16 31 H 0.11 2.48 8.14 -2.38 -0.02 2.46 16 32 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.08 2.36 7.57 -2.39 -0.02 2.34 16 34 H 0.05 2.37 6.69 -2.39 -0.02 2.35 16 35 H 0.02 0.66 7.19 -2.39 -0.02 0.64 16 36 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 37 H 0.31 14.76 8.70 -89.70 -0.78 13.98 16 Total: -1.00 -60.70 286.15 0.00 -60.70 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 0.26 Total: 23.93 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: 3.53 Total: -24.67 kcal Atomic # 7 Polarization: -100.25 SS G_CDS: -5.81 Total: -106.07 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -60.70 0.00 -60.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219411554.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.922 kcal (2) G-P(sol) polarization free energy of solvation -60.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds