Wall clock time and date at job start Mon Mar 30 2020 03:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 119.99989 * 2 1 4 4 N 1.46898 * 109.47320 * 125.27064 * 3 2 1 5 5 C 1.46951 * 111.00112 * 66.04359 * 4 3 2 6 6 C 1.53055 * 109.36553 * 183.18737 * 5 4 3 7 7 H 1.08997 * 109.48856 * 61.58785 * 6 5 4 8 8 C 1.50697 * 109.48963 * 181.63212 * 6 5 4 9 9 H 1.08000 * 119.99890 * 84.82102 * 8 6 5 10 10 C 1.37876 * 120.00097 * 264.81966 * 8 6 5 11 11 N 1.31517 * 119.99915 * 5.23487 * 10 8 6 12 12 Si 1.86803 * 119.99988 * 185.23770 * 10 8 6 13 13 H 1.48498 * 109.47008 * 59.99941 * 12 10 8 14 14 H 1.48498 * 109.46922 * 179.97438 * 12 10 8 15 15 H 1.48491 * 109.47068 * 300.00022 * 12 10 8 16 16 N 1.46958 * 109.36300 * 301.60233 * 6 5 4 17 17 C 1.46898 * 110.99750 * 183.18794 * 16 6 5 18 18 C 1.46951 * 110.88350 * 59.31825 * 16 6 5 19 19 C 1.46958 * 110.99750 * 189.84612 * 4 3 2 20 20 H 1.08999 * 109.49109 * 296.77076 * 19 4 3 21 21 C 1.52997 * 109.49276 * 56.84389 * 19 4 3 22 22 H 1.08005 * 120.00444 * 359.73798 * 1 2 3 23 23 H 1.08002 * 120.00131 * 179.72550 * 1 2 3 24 24 H 1.08005 * 119.99914 * 180.26211 * 2 1 3 25 25 H 1.09002 * 109.47096 * 245.26860 * 3 2 1 26 26 H 1.09004 * 109.47283 * 5.27031 * 3 2 1 27 27 H 1.08993 * 109.48985 * 303.15729 * 5 4 3 28 28 H 1.09002 * 109.48783 * 63.22459 * 5 4 3 29 29 H 0.97003 * 119.99582 * 180.02562 * 11 10 8 30 30 H 1.08996 * 109.47333 * 65.43328 * 17 16 6 31 31 H 1.08997 * 109.47183 * 185.43499 * 17 16 6 32 32 H 1.09003 * 109.47476 * 305.42976 * 17 16 6 33 33 H 1.09002 * 109.48783 * 60.64303 * 18 16 6 34 34 H 1.08997 * 109.49185 * 180.68822 * 18 16 6 35 35 H 1.09002 * 109.47300 * 59.99564 * 21 19 4 36 36 H 1.09000 * 109.47148 * 179.97438 * 21 19 4 37 37 H 1.08997 * 109.46818 * 300.00139 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0009 1.3293 1.1307 5 6 4.0537 0.3178 0.9638 6 6 4.9609 0.3212 2.1965 7 1 4.3761 0.0619 3.0790 8 6 6.0652 -0.6872 2.0109 9 1 6.9620 -0.4134 1.4750 10 6 5.9307 -1.9594 2.5252 11 7 4.7993 -2.3252 3.0871 12 14 7.3554 -3.1632 2.4239 13 1 8.5267 -2.6059 3.1469 14 1 6.9589 -4.4527 3.0445 15 1 7.7135 -3.3878 1.0004 16 7 5.5429 1.6595 2.3694 17 6 6.4803 1.6838 3.5001 18 6 4.4901 2.6711 2.5363 19 6 3.5829 2.6676 1.3036 20 1 4.1678 2.9266 0.4211 21 6 2.4618 3.6915 1.4921 22 1 -0.5401 0.9353 0.0043 23 1 -0.5400 -0.9353 -0.0045 24 1 1.8499 -0.9353 -0.0043 25 1 2.6174 1.4048 -0.9334 26 1 1.3589 2.1315 0.0944 27 1 3.5982 -0.6658 0.8502 28 1 4.6439 0.5501 0.0773 29 1 4.7048 -3.2201 3.4493 30 1 7.3354 1.0457 3.2769 31 1 6.8227 2.7051 3.6664 32 1 5.9785 1.3185 4.3961 33 1 3.8999 2.4387 3.4228 34 1 4.9456 3.6547 2.6503 35 1 1.8779 3.4325 2.3753 36 1 2.8938 4.6839 1.6207 37 1 1.8148 3.6874 0.6149 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219413133.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:25 Heat of formation + Delta-G solvation = 33.274083 kcal Electronic energy + Delta-G solvation = -16339.356067 eV Core-core repulsion = 13924.259873 eV Total energy + Delta-G solvation = -2415.096194 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.77719 -35.50953 -33.40021 -32.48401 -31.04566 -27.99241 -26.91271 -24.61091 -23.95076 -22.49046 -20.43656 -19.26252 -18.66288 -16.52281 -15.37025 -14.92644 -14.73804 -14.37345 -14.11418 -13.43841 -13.28543 -13.15403 -12.55742 -12.22620 -11.95018 -11.65436 -11.37809 -11.22197 -11.02565 -10.92508 -10.77036 -10.54853 -10.38804 -10.16602 -9.73693 -9.59451 -9.10657 -8.98299 -8.47648 -7.55210 -7.08106 -6.04715 -4.10231 2.64759 3.30427 3.35418 3.38179 4.38497 4.66604 5.00718 5.23418 5.29511 5.46479 5.59611 5.71138 5.76943 5.85869 5.91489 6.03065 6.17164 6.19573 6.25744 6.34227 6.37727 6.51699 6.62452 6.76022 6.77124 6.92678 7.01549 7.13579 7.28840 7.59914 7.76987 7.83345 7.92394 8.10891 8.29086 8.66153 9.06174 9.56269 11.02513 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.024668 B = 0.010047 C = 0.007602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.793843 B = 2786.366032 C = 3682.338648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C 0.075 3.925 4 N -0.534 5.534 5 C 0.076 3.924 6 C 0.210 3.790 7 H 0.037 0.963 8 C -0.508 4.508 9 H 0.060 0.940 10 C 0.065 3.935 11 N -0.886 5.886 12 Si 0.894 3.106 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.276 1.276 16 N -0.549 5.549 17 C 0.049 3.951 18 C 0.064 3.936 19 C 0.086 3.914 20 H 0.039 0.961 21 C -0.145 4.145 22 H 0.090 0.910 23 H 0.093 0.907 24 H 0.111 0.889 25 H 0.034 0.966 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.019 0.981 29 H 0.262 0.738 30 H 0.072 0.928 31 H 0.037 0.963 32 H 0.013 0.987 33 H 0.029 0.971 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.593 7.684 -3.367 9.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.144 4.144 3 C -0.053 4.053 4 N -0.260 5.260 5 C -0.051 4.051 6 C 0.104 3.896 7 H 0.055 0.945 8 C -0.547 4.547 9 H 0.078 0.922 10 C -0.138 4.138 11 N -0.524 5.524 12 Si 0.721 3.279 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.202 1.202 16 N -0.274 5.274 17 C -0.099 4.099 18 C -0.065 4.065 19 C -0.023 4.023 20 H 0.057 0.943 21 C -0.203 4.203 22 H 0.108 0.892 23 H 0.111 0.889 24 H 0.129 0.871 25 H 0.052 0.948 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.032 0.968 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.673 7.522 -3.268 9.440 hybrid contribution 0.694 -0.825 -0.007 1.078 sum -3.979 6.697 -3.274 8.450 Atomic orbital electron populations 1.23637 0.95751 1.01111 1.03770 1.22974 0.95787 0.98760 0.96880 1.21298 0.95634 0.95640 0.92717 1.62410 1.18617 1.04890 1.40057 1.22468 0.90094 0.93500 0.99027 1.19415 0.92621 0.83630 0.93965 0.94467 1.20958 1.02840 0.95364 1.35553 0.92169 1.25020 0.95662 0.98330 0.94797 1.69974 1.24130 1.19464 1.38813 0.86636 0.82727 0.80129 0.78390 1.20176 1.21342 1.20171 1.62341 1.16478 1.07779 1.40812 1.21998 0.97368 0.98858 0.91677 1.22056 0.92711 0.95923 0.95860 1.21558 0.93946 0.89063 0.97728 0.94271 1.21895 0.98545 0.97903 1.01951 0.89166 0.88851 0.87102 0.94834 0.90784 0.90646 0.96235 0.92786 0.90895 0.94381 0.96805 0.95277 0.92232 0.92046 0.92675 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.93 14.32 29.02 0.42 -2.51 16 2 C -0.13 -2.10 9.19 -36.02 -0.33 -2.43 16 3 C 0.07 1.26 5.17 -4.98 -0.03 1.23 16 4 N -0.53 -10.70 4.52 -227.93 -1.03 -11.73 16 5 C 0.08 1.79 4.70 -3.77 -0.02 1.77 16 6 C 0.21 5.36 2.02 -68.81 -0.14 5.22 16 7 H 0.04 1.10 7.38 -51.93 -0.38 0.71 16 8 C -0.51 -13.87 7.05 -34.44 -0.24 -14.11 16 9 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 10 C 0.07 1.79 5.45 -17.82 -0.10 1.69 16 11 N -0.89 -25.46 12.84 55.43 0.71 -24.74 16 12 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 N -0.55 -12.40 4.78 -236.13 -1.13 -13.53 16 17 C 0.05 1.04 9.19 60.06 0.55 1.59 16 18 C 0.06 1.23 4.89 -3.77 -0.02 1.21 16 19 C 0.09 1.55 2.56 -67.65 -0.17 1.38 16 20 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 21 C -0.14 -2.06 8.89 37.16 0.33 -1.73 16 22 H 0.09 1.15 7.84 -52.48 -0.41 0.74 16 23 H 0.09 1.22 8.06 -52.49 -0.42 0.80 16 24 H 0.11 2.02 6.89 -52.48 -0.36 1.66 16 25 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 26 H 0.07 1.11 5.39 -51.93 -0.28 0.83 16 27 H 0.08 1.89 6.52 -51.93 -0.34 1.55 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.07 1.61 7.22 -51.93 -0.37 1.23 16 31 H 0.04 0.67 8.04 -51.93 -0.42 0.26 16 32 H 0.01 0.30 8.13 -51.93 -0.42 -0.13 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.70 6.15 -51.93 -0.32 0.38 16 LS Contribution 291.09 15.07 4.39 4.39 Total: -1.00 -28.49 291.09 -8.06 -36.55 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.23 Total: -0.38 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 0.25 Total: -6.68 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: -1.45 Total: -50.00 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.49 -8.06 -36.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219413133.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.821 kcal (2) G-P(sol) polarization free energy of solvation -28.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds