Wall clock time and date at job start Mon Mar 30 2020 03:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50695 * 120.00004 * 2 1 4 4 N 1.46899 * 109.47381 * 124.99533 * 3 2 1 5 5 C 1.46953 * 111.00236 * 169.99715 * 4 3 2 6 6 C 1.53056 * 109.36571 * 183.19295 * 5 4 3 7 7 H 1.08998 * 109.48697 * 181.63542 * 6 5 4 8 8 C 1.52999 * 109.49067 * 61.56706 * 6 5 4 9 9 N 1.46963 * 109.36215 * 301.59782 * 6 5 4 10 10 C 1.46898 * 110.99684 * 183.18755 * 9 6 5 11 11 C 1.46956 * 110.87582 * 59.32405 * 9 6 5 12 12 H 1.08997 * 109.49356 * 60.64660 * 11 9 6 13 13 C 1.50703 * 109.48539 * 180.71280 * 11 9 6 14 14 H 1.07999 * 120.00240 * 359.88256 * 13 11 9 15 15 C 1.37877 * 119.99862 * 179.89161 * 13 11 9 16 16 N 1.31519 * 119.99966 * 359.97438 * 15 13 11 17 17 Si 1.86794 * 119.99900 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47226 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47408 * 119.99799 * 17 15 13 20 20 H 1.48501 * 109.47106 * 239.99797 * 17 15 13 21 21 C 1.46954 * 111.00171 * 293.80284 * 4 3 2 22 22 H 1.07996 * 120.00127 * 0.02562 * 1 2 3 23 23 H 1.08006 * 119.99825 * 180.02562 * 1 2 3 24 24 H 1.08005 * 119.99838 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47325 * 4.99802 * 3 2 1 26 26 H 1.08996 * 109.47217 * 244.99466 * 3 2 1 27 27 H 1.08997 * 109.48869 * 63.22316 * 5 4 3 28 28 H 1.09004 * 109.51107 * 303.16883 * 5 4 3 29 29 H 1.08997 * 109.46636 * 59.99794 * 8 6 5 30 30 H 1.09002 * 109.47059 * 180.02562 * 8 6 5 31 31 H 1.09004 * 109.46803 * 300.00152 * 8 6 5 32 32 H 1.09000 * 109.47043 * 56.05088 * 10 9 6 33 33 H 1.08999 * 109.46614 * 176.04706 * 10 9 6 34 34 H 1.09002 * 109.47268 * 296.04918 * 10 9 6 35 35 H 0.97005 * 119.99560 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.48555 * 296.77343 * 21 4 3 37 37 H 1.08996 * 109.48968 * 56.82240 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3320 1.1346 5 6 3.9129 2.4764 1.0357 6 6 4.9167 2.4237 2.1899 7 1 5.5793 3.2874 2.1352 8 6 5.7421 1.1393 2.0904 9 7 4.1912 2.4426 3.4678 10 6 5.1240 2.4695 4.6023 11 6 3.2746 1.2982 3.5666 12 1 3.8439 0.3704 3.5114 13 6 2.5356 1.3578 4.8787 14 1 2.7286 2.1639 5.5711 15 6 1.6131 0.3832 5.1952 16 7 1.3777 -0.5982 4.3519 17 14 0.6976 0.4567 6.8217 18 1 1.1409 1.6504 7.5858 19 1 -0.7622 0.5472 6.5646 20 1 0.9866 -0.7693 7.6083 21 6 2.2708 1.3508 2.4124 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9354 0.0004 24 1 1.8500 -0.9354 0.0004 25 1 1.3586 2.1316 0.0895 26 1 2.6213 1.4025 -0.9313 27 1 3.3435 3.4042 1.0909 28 1 4.4474 2.4337 0.0867 29 1 6.2784 1.1248 1.1417 30 1 6.4565 1.1020 2.9128 31 1 5.0789 0.2761 2.1462 32 1 5.7926 3.3246 4.5028 33 1 4.5622 2.5539 5.5326 34 1 5.7092 1.5500 4.6134 35 1 0.7284 -1.2836 4.5744 36 1 1.6828 2.2659 2.4833 37 1 1.6079 0.4873 2.4670 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219413508.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:44 Heat of formation + Delta-G solvation = 38.157099 kcal Electronic energy + Delta-G solvation = -16613.620759 eV Core-core repulsion = 14198.736309 eV Total energy + Delta-G solvation = -2414.884450 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.86734 -35.60753 -33.17892 -32.45409 -30.43527 -28.03033 -26.17080 -25.24287 -24.33042 -21.64345 -21.38267 -19.20952 -17.69568 -16.52305 -15.48703 -14.72066 -14.63169 -14.22306 -13.79027 -13.65654 -13.33975 -12.95549 -12.68756 -12.24220 -11.72312 -11.52923 -11.28787 -10.99623 -10.95013 -10.86398 -10.61252 -10.53122 -10.24727 -10.02696 -10.00341 -9.44908 -8.97921 -8.77930 -8.43449 -7.48419 -7.04321 -6.01454 -4.05759 2.79514 3.29393 3.37579 3.41865 4.40576 4.80820 5.07535 5.31465 5.49389 5.56651 5.63886 5.81515 5.88113 5.97633 6.09291 6.11074 6.19531 6.31285 6.35673 6.43018 6.45261 6.63593 6.80569 6.84938 6.95906 7.05943 7.11404 7.23816 7.43268 7.64960 7.79686 7.95968 8.03274 8.20342 8.36301 8.66101 9.02057 9.59076 11.04818 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.013002 C = 0.008532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.624069 B = 2153.063074 C = 3281.150780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 C 0.083 3.917 4 N -0.538 5.538 5 C 0.066 3.934 6 C 0.082 3.918 7 H 0.066 0.934 8 C -0.174 4.174 9 N -0.538 5.538 10 C 0.039 3.961 11 C 0.219 3.781 12 H 0.015 0.985 13 C -0.508 4.508 14 H 0.064 0.936 15 C 0.061 3.939 16 N -0.887 5.887 17 Si 0.895 3.105 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.067 3.933 22 H 0.088 0.912 23 H 0.093 0.907 24 H 0.110 0.890 25 H 0.028 0.972 26 H 0.068 0.932 27 H 0.030 0.970 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.016 0.984 35 H 0.260 0.740 36 H 0.012 0.988 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.117 2.898 -6.659 7.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.143 4.143 3 C -0.045 4.045 4 N -0.263 5.263 5 C -0.062 4.062 6 C -0.027 4.027 7 H 0.084 0.916 8 C -0.233 4.233 9 N -0.263 5.263 10 C -0.110 4.110 11 C 0.113 3.887 12 H 0.032 0.968 13 C -0.547 4.547 14 H 0.082 0.918 15 C -0.141 4.141 16 N -0.526 5.526 17 Si 0.723 3.277 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.060 4.060 22 H 0.107 0.893 23 H 0.112 0.888 24 H 0.128 0.872 25 H 0.046 0.954 26 H 0.087 0.913 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.030 0.970 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.002 2.748 -6.664 7.808 hybrid contribution -0.574 -0.047 0.876 1.048 sum 2.428 2.700 -5.788 6.833 Atomic orbital electron populations 1.23669 0.95972 1.01142 1.02974 1.22790 0.95404 0.98538 0.97581 1.21133 0.94274 0.94469 0.94638 1.62333 1.19452 1.41038 1.03451 1.22047 0.94744 0.92280 0.97150 1.21646 0.93726 0.96273 0.91100 0.91623 1.22313 1.00069 1.01059 0.99838 1.62450 1.17567 1.46400 0.99868 1.22167 0.95002 0.97931 0.95894 1.19298 0.89182 0.86734 0.93496 0.96780 1.21199 1.22167 1.09444 1.01850 0.91779 1.24948 0.96833 0.95262 0.97044 1.69894 1.34557 1.12867 1.35260 0.86493 0.79586 0.77871 0.83784 1.19778 1.21064 1.21113 1.22533 0.97034 1.01216 0.85186 0.89324 0.88824 0.87212 0.95392 0.91347 0.95221 0.92022 0.93744 0.93764 0.90549 0.94119 0.90823 0.96559 0.92980 0.97002 0.86857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.26 14.32 29.01 0.42 -2.84 16 2 C -0.12 -2.18 8.58 -36.03 -0.31 -2.49 16 3 C 0.08 1.45 5.40 -4.98 -0.03 1.43 16 4 N -0.54 -10.98 4.02 -235.91 -0.95 -11.93 16 5 C 0.07 1.22 5.04 -3.77 -0.02 1.20 16 6 C 0.08 1.55 2.97 -67.65 -0.20 1.35 16 7 H 0.07 1.12 8.13 -51.93 -0.42 0.70 16 8 C -0.17 -3.17 8.37 37.16 0.31 -2.86 16 9 N -0.54 -11.93 4.73 -228.13 -1.08 -13.01 16 10 C 0.04 0.78 8.82 60.06 0.53 1.31 16 11 C 0.22 5.56 1.57 -68.80 -0.11 5.45 16 12 H 0.01 0.41 6.34 -51.93 -0.33 0.08 16 13 C -0.51 -13.87 7.94 -34.44 -0.27 -14.14 16 14 H 0.06 1.76 6.45 -52.49 -0.34 1.42 16 15 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 16 N -0.89 -24.91 11.34 55.43 0.63 -24.28 16 17 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 C 0.07 1.64 4.47 -3.77 -0.02 1.62 16 22 H 0.09 1.39 7.84 -52.49 -0.41 0.97 16 23 H 0.09 1.40 8.06 -52.48 -0.42 0.98 16 24 H 0.11 1.94 8.06 -52.48 -0.42 1.51 16 25 H 0.03 0.50 7.77 -51.93 -0.40 0.09 16 26 H 0.07 1.05 8.03 -51.93 -0.42 0.63 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.97 8.07 -51.93 -0.42 0.56 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.04 0.78 6.57 -51.93 -0.34 0.44 16 31 H 0.08 1.62 5.94 -51.93 -0.31 1.31 16 32 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 33 H 0.07 1.57 6.29 -51.93 -0.33 1.24 16 34 H 0.02 0.32 6.59 -51.93 -0.34 -0.02 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.11 3.03 5.17 -51.93 -0.27 2.76 16 LS Contribution 283.89 15.07 4.28 4.28 Total: -1.00 -27.98 283.89 -7.93 -35.91 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.00 Total: 1.21 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 0.21 Total: -8.40 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -1.40 Total: -49.22 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.98 -7.93 -35.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219413508.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.065 kcal (2) G-P(sol) polarization free energy of solvation -27.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds