Wall clock time and date at job start Mon Mar 30 2020 03:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50695 * 120.00004 * 2 1 4 4 N 1.46899 * 109.47381 * 124.99533 * 3 2 1 5 5 C 1.46953 * 111.00236 * 169.99715 * 4 3 2 6 6 C 1.53056 * 109.36571 * 183.19295 * 5 4 3 7 7 H 1.08998 * 109.48697 * 181.63542 * 6 5 4 8 8 C 1.52999 * 109.49067 * 61.56706 * 6 5 4 9 9 N 1.46963 * 109.36215 * 301.59782 * 6 5 4 10 10 C 1.46898 * 110.99684 * 183.18755 * 9 6 5 11 11 C 1.46956 * 110.87582 * 59.32405 * 9 6 5 12 12 H 1.08997 * 109.49356 * 60.64660 * 11 9 6 13 13 C 1.50703 * 109.48539 * 180.71280 * 11 9 6 14 14 H 1.07999 * 120.00240 * 359.88256 * 13 11 9 15 15 C 1.37877 * 119.99862 * 179.89161 * 13 11 9 16 16 N 1.31519 * 119.99966 * 359.97438 * 15 13 11 17 17 Si 1.86794 * 119.99900 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47226 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47408 * 119.99799 * 17 15 13 20 20 H 1.48501 * 109.47106 * 239.99797 * 17 15 13 21 21 C 1.46954 * 111.00171 * 293.80284 * 4 3 2 22 22 H 1.07996 * 120.00127 * 0.02562 * 1 2 3 23 23 H 1.08006 * 119.99825 * 180.02562 * 1 2 3 24 24 H 1.08005 * 119.99838 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47325 * 4.99802 * 3 2 1 26 26 H 1.08996 * 109.47217 * 244.99466 * 3 2 1 27 27 H 1.08997 * 109.48869 * 63.22316 * 5 4 3 28 28 H 1.09004 * 109.51107 * 303.16883 * 5 4 3 29 29 H 1.08997 * 109.46636 * 59.99794 * 8 6 5 30 30 H 1.09002 * 109.47059 * 180.02562 * 8 6 5 31 31 H 1.09004 * 109.46803 * 300.00152 * 8 6 5 32 32 H 1.09000 * 109.47043 * 56.05088 * 10 9 6 33 33 H 1.08999 * 109.46614 * 176.04706 * 10 9 6 34 34 H 1.09002 * 109.47268 * 296.04918 * 10 9 6 35 35 H 0.97005 * 119.99560 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.48555 * 296.77343 * 21 4 3 37 37 H 1.08996 * 109.48968 * 56.82240 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3320 1.1346 5 6 3.9129 2.4764 1.0357 6 6 4.9167 2.4237 2.1899 7 1 5.5793 3.2874 2.1352 8 6 5.7421 1.1393 2.0904 9 7 4.1912 2.4426 3.4678 10 6 5.1240 2.4695 4.6023 11 6 3.2746 1.2982 3.5666 12 1 3.8439 0.3704 3.5114 13 6 2.5356 1.3578 4.8787 14 1 2.7286 2.1639 5.5711 15 6 1.6131 0.3832 5.1952 16 7 1.3777 -0.5982 4.3519 17 14 0.6976 0.4567 6.8217 18 1 1.1409 1.6504 7.5858 19 1 -0.7622 0.5472 6.5646 20 1 0.9866 -0.7693 7.6083 21 6 2.2708 1.3508 2.4124 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9354 0.0004 24 1 1.8500 -0.9354 0.0004 25 1 1.3586 2.1316 0.0895 26 1 2.6213 1.4025 -0.9313 27 1 3.3435 3.4042 1.0909 28 1 4.4474 2.4337 0.0867 29 1 6.2784 1.1248 1.1417 30 1 6.4565 1.1020 2.9128 31 1 5.0789 0.2761 2.1462 32 1 5.7926 3.3246 4.5028 33 1 4.5622 2.5539 5.5326 34 1 5.7092 1.5500 4.6134 35 1 0.7284 -1.2836 4.5744 36 1 1.6828 2.2659 2.4833 37 1 1.6079 0.4873 2.4670 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219413508.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:44 Heat of formation + Delta-G solvation = 19.442788 kcal Electronic energy + Delta-G solvation = -16614.432272 eV Core-core repulsion = 14198.736309 eV Total energy + Delta-G solvation = -2415.695964 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.52240 -37.14708 -35.14581 -33.93847 -32.20291 -29.73486 -27.64630 -27.20936 -25.89810 -23.37246 -23.09055 -20.60108 -19.39690 -18.50493 -17.20500 -16.43828 -16.22673 -15.86042 -15.52368 -15.24917 -14.93063 -14.54754 -14.26691 -13.99523 -13.36082 -13.11137 -12.89832 -12.78638 -12.65830 -12.45697 -12.26359 -12.13880 -11.93579 -11.81687 -11.76362 -11.15704 -10.83620 -10.53935 -10.17130 -9.12048 -8.80469 -8.09591 -6.21204 1.39935 1.42362 1.44548 1.53559 2.42288 3.11977 3.33789 3.46800 4.08411 4.10280 4.23367 4.37307 4.38357 4.57217 4.67059 4.69382 4.73210 4.74906 4.80956 4.94688 4.97522 5.05944 5.11428 5.15546 5.27485 5.37957 5.57632 5.71941 5.75732 5.77827 5.87438 6.18296 6.29600 6.39510 6.55480 6.82344 6.94583 7.47493 8.95426 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.013002 C = 0.008532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.624069 B = 2153.063074 C = 3281.150780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.084 3.916 4 N -0.545 5.545 5 C 0.065 3.935 6 C 0.076 3.924 7 H 0.096 0.904 8 C -0.163 4.163 9 N -0.551 5.551 10 C 0.042 3.958 11 C 0.228 3.772 12 H -0.022 1.022 13 C -0.526 4.526 14 H 0.057 0.943 15 C 0.017 3.983 16 N -0.910 5.910 17 Si 0.956 3.044 18 H -0.269 1.269 19 H -0.281 1.281 20 H -0.281 1.281 21 C 0.086 3.914 22 H 0.095 0.905 23 H 0.105 0.895 24 H 0.103 0.897 25 H 0.026 0.974 26 H 0.098 0.902 27 H 0.025 0.975 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.011 0.989 35 H 0.261 0.739 36 H -0.014 1.014 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.752 3.834 -7.370 9.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.162 4.162 3 C -0.043 4.043 4 N -0.270 5.270 5 C -0.063 4.063 6 C -0.033 4.033 7 H 0.114 0.886 8 C -0.222 4.222 9 N -0.276 5.276 10 C -0.106 4.106 11 C 0.121 3.879 12 H -0.005 1.005 13 C -0.565 4.565 14 H 0.075 0.925 15 C -0.183 4.183 16 N -0.550 5.550 17 Si 0.782 3.218 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.206 1.206 21 C -0.042 4.042 22 H 0.113 0.887 23 H 0.124 0.876 24 H 0.121 0.879 25 H 0.044 0.956 26 H 0.116 0.884 27 H 0.043 0.957 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.030 0.970 35 H 0.070 0.930 36 H 0.005 0.995 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.653 3.696 -7.389 9.033 hybrid contribution -0.738 -0.328 1.053 1.328 sum 2.915 3.367 -6.335 7.744 Atomic orbital electron populations 1.23856 0.95774 1.02054 1.01371 1.22829 0.95926 0.98411 0.99074 1.21218 0.94197 0.94311 0.94617 1.62260 1.19811 1.42348 1.02539 1.22182 0.94349 0.91116 0.98652 1.21871 0.94135 0.97709 0.89585 0.88642 1.22178 0.99372 0.99077 1.01535 1.62402 1.18604 1.44581 1.01992 1.22148 0.94761 0.99130 0.94575 1.19007 0.89425 0.86347 0.93145 1.00454 1.21474 1.22732 1.09387 1.02937 0.92528 1.25669 0.97566 0.94952 1.00116 1.70025 1.34942 1.13303 1.36688 0.85543 0.78312 0.77936 0.80057 1.19363 1.20680 1.20646 1.22070 0.96323 0.98511 0.87267 0.88701 0.87646 0.87858 0.95625 0.88372 0.95686 0.88422 0.90831 0.93540 0.94192 0.90717 0.92717 0.97023 0.92970 0.99527 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.16 14.32 67.78 0.97 -5.19 16 2 C -0.14 -4.97 8.58 25.65 0.22 -4.75 16 3 C 0.08 2.84 5.40 85.56 0.46 3.30 16 4 N -0.55 -21.89 4.02 -900.29 -3.62 -25.51 16 5 C 0.07 2.24 5.04 86.31 0.43 2.67 16 6 C 0.08 2.70 2.97 44.92 0.13 2.83 16 7 H 0.10 2.87 8.13 -2.39 -0.02 2.85 16 8 C -0.16 -5.65 8.37 71.98 0.60 -5.05 16 9 N -0.55 -24.14 4.73 -875.67 -4.14 -28.28 16 10 C 0.04 1.66 8.82 127.69 1.13 2.79 16 11 C 0.23 11.81 1.57 44.18 0.07 11.88 16 12 H -0.02 -1.28 6.34 -2.39 -0.02 -1.30 16 13 C -0.53 -29.42 7.94 25.60 0.20 -29.22 16 14 H 0.06 3.17 6.45 -2.91 -0.02 3.15 16 15 C 0.02 0.92 5.30 84.65 0.45 1.37 16 16 N -0.91 -52.31 11.34 21.45 0.24 -52.07 16 17 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 C 0.09 4.29 4.47 86.31 0.39 4.68 16 22 H 0.09 2.88 7.84 -2.91 -0.02 2.86 16 23 H 0.11 3.07 8.06 -2.91 -0.02 3.04 16 24 H 0.10 3.67 8.06 -2.91 -0.02 3.64 16 25 H 0.03 0.88 7.77 -2.39 -0.02 0.86 16 26 H 0.10 2.73 8.03 -2.39 -0.02 2.71 16 27 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.10 2.68 8.07 -2.39 -0.02 2.66 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.05 1.56 6.57 -2.39 -0.02 1.54 16 31 H 0.04 1.68 5.94 -2.38 -0.01 1.67 16 32 H 0.07 2.41 8.13 -2.39 -0.02 2.39 16 33 H 0.05 2.33 6.29 -2.39 -0.02 2.32 16 34 H 0.01 0.45 6.59 -2.39 -0.02 0.44 16 35 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 36 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 37 H 0.09 4.75 5.17 -2.39 -0.01 4.74 16 Total: -1.00 -61.15 283.89 0.59 -60.56 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 1.02 Total: 13.88 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 5.06 Total: -14.67 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -7.51 Total: -105.85 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -61.15 0.59 -60.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219413508.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.006 kcal (2) G-P(sol) polarization free energy of solvation -61.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds