Wall clock time and date at job start Mon Mar 30 2020 02:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.49264 * 2 1 4 4 C 1.53048 * 109.48914 * 120.04554 * 2 1 3 5 5 N 1.46962 * 109.36576 * 61.56516 * 4 2 1 6 6 C 1.46956 * 110.87949 * 59.31925 * 5 4 2 7 7 C 1.53048 * 109.36533 * 300.68101 * 6 5 4 8 8 H 1.09002 * 109.49366 * 298.43246 * 7 6 5 9 9 C 1.50705 * 109.49007 * 178.36812 * 7 6 5 10 10 H 1.07995 * 120.00238 * 245.41670 * 9 7 6 11 11 C 1.37881 * 119.99634 * 65.41381 * 9 7 6 12 12 N 1.31510 * 120.00136 * 0.02562 * 11 9 7 13 13 Si 1.86805 * 119.99600 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47081 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.46943 * 119.99749 * 13 11 9 16 16 H 1.48496 * 109.46792 * 239.99615 * 13 11 9 17 17 N 1.46956 * 109.48755 * 239.93682 * 2 1 3 18 18 C 1.46901 * 111.00317 * 63.21961 * 17 2 1 19 19 C 1.52999 * 117.49774 * 138.48346 * 18 17 2 20 20 C 1.52997 * 60.00107 * 252.51637 * 19 18 17 21 21 H 1.08997 * 109.46830 * 305.99246 * 1 2 3 22 22 H 1.09003 * 109.46765 * 65.98973 * 1 2 3 23 23 H 1.08997 * 109.47132 * 185.98587 * 1 2 3 24 24 H 1.08997 * 109.47349 * 190.10783 * 3 2 1 25 25 H 1.09010 * 109.46882 * 310.10696 * 3 2 1 26 26 H 1.09000 * 109.46861 * 70.10129 * 3 2 1 27 27 H 1.09001 * 109.48954 * 301.59565 * 4 2 1 28 28 H 1.08996 * 109.50599 * 181.54349 * 4 2 1 29 29 H 1.00890 * 111.00182 * 183.19468 * 5 4 2 30 30 H 1.09000 * 109.48903 * 180.71641 * 6 5 4 31 31 H 1.08993 * 109.48773 * 60.65118 * 6 5 4 32 32 H 0.97004 * 120.00121 * 180.02562 * 12 11 9 33 33 H 1.09000 * 115.55204 * 284.19056 * 18 17 2 34 34 H 1.09004 * 117.50020 * 0.02562 * 19 18 17 35 35 H 1.09001 * 117.50113 * 145.01954 * 19 18 17 36 36 H 1.09007 * 117.49784 * 252.51547 * 20 19 18 37 37 H 1.08994 * 117.50174 * 107.49287 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0406 -0.7224 1.2489 5 7 1.5809 -2.1181 1.2268 6 6 2.0711 -2.8121 0.0278 7 6 1.5605 -2.0897 -1.2211 8 1 0.4708 -2.1134 -1.2351 9 6 2.0945 -2.7755 -2.4523 10 1 2.7822 -2.2570 -3.1038 11 6 1.7050 -4.0649 -2.7467 12 7 0.8671 -4.6961 -1.9536 13 14 2.3674 -4.9153 -4.2724 14 1 3.2858 -3.9964 -4.9919 15 1 3.1046 -6.1416 -3.8749 16 1 1.2380 -5.2835 -5.1635 17 7 2.0203 -0.6940 -1.1990 18 6 1.6134 0.0137 -2.4203 19 6 2.6460 0.1370 -3.5426 20 6 2.2735 1.3637 -2.7076 21 1 -0.3633 0.6039 0.8315 22 1 -0.3633 0.4182 -0.9388 23 1 -0.3633 -1.0220 0.1072 24 1 3.1155 1.4473 -0.1803 25 1 1.5376 2.0057 -0.7861 26 1 1.8320 1.9015 0.9663 27 1 1.6544 -0.2263 2.1394 28 1 3.1302 -0.6987 1.2632 29 1 1.8602 -2.6041 2.0656 30 1 1.7071 -3.8395 0.0279 31 1 3.1610 -2.8121 0.0278 32 1 0.5934 -5.6034 -2.1605 33 1 0.5690 -0.1073 -2.7080 34 1 3.6271 -0.3074 -3.3748 35 1 2.2811 0.0970 -4.5689 36 1 1.6635 2.1309 -3.1845 37 1 3.0096 1.7268 -1.9904 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219413782.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:31 Heat of formation + Delta-G solvation = 24.242951 kcal Electronic energy + Delta-G solvation = -16957.565420 eV Core-core repulsion = 14542.077607 eV Total energy + Delta-G solvation = -2415.487813 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.86433 -37.33995 -35.45059 -34.08579 -32.63684 -28.48442 -28.13749 -27.15213 -25.06479 -22.95384 -22.42521 -21.66453 -19.11376 -18.42952 -17.15163 -16.51825 -16.39495 -15.88976 -15.48177 -15.36351 -14.77128 -14.30852 -14.13539 -13.65087 -13.25845 -13.00809 -12.86122 -12.81253 -12.57284 -12.33340 -12.14242 -12.03198 -11.86115 -11.70590 -11.39986 -11.15301 -10.67677 -10.51199 -10.44782 -9.24276 -8.80770 -8.09299 -6.18264 1.39143 1.41491 1.52902 2.42986 3.11397 3.20451 3.21499 3.57990 4.00155 4.23574 4.27142 4.29320 4.40068 4.53851 4.68218 4.74793 4.78493 4.82126 4.87388 4.93056 5.03139 5.05453 5.08259 5.23537 5.26073 5.37513 5.44361 5.46726 5.55466 5.77431 5.82356 6.11441 6.33981 6.47346 6.71931 6.88129 7.01658 7.50871 8.98202 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.027637 B = 0.012078 C = 0.009254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.892449 B = 2317.785568 C = 3024.946224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.099 3.901 3 C -0.131 4.131 4 C 0.073 3.927 5 N -0.697 5.697 6 C 0.085 3.915 7 C 0.233 3.767 8 H -0.026 1.026 9 C -0.513 4.513 10 H 0.066 0.934 11 C 0.011 3.989 12 N -0.922 5.922 13 Si 0.953 3.047 14 H -0.266 1.266 15 H -0.282 1.282 16 H -0.284 1.284 17 N -0.505 5.505 18 C 0.018 3.982 19 C -0.167 4.167 20 C -0.152 4.152 21 H 0.070 0.930 22 H 0.040 0.960 23 H 0.037 0.963 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.025 0.975 29 H 0.338 0.662 30 H 0.065 0.935 31 H -0.002 1.002 32 H 0.259 0.741 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.324 11.131 3.276 11.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.009 3.991 3 C -0.189 4.189 4 C -0.056 4.056 5 N -0.328 5.328 6 C -0.044 4.044 7 C 0.125 3.875 8 H -0.009 1.009 9 C -0.552 4.552 10 H 0.085 0.915 11 C -0.188 4.188 12 N -0.562 5.562 13 Si 0.779 3.221 14 H -0.191 1.191 15 H -0.208 1.208 16 H -0.210 1.210 17 N -0.230 5.230 18 C -0.091 4.091 19 C -0.205 4.205 20 C -0.189 4.189 21 H 0.089 0.911 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.111 0.889 28 H 0.043 0.957 29 H 0.156 0.844 30 H 0.083 0.917 31 H 0.016 0.984 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.127 0.873 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.146 11.109 3.043 11.716 hybrid contribution 0.070 -1.437 -0.637 1.573 sum 2.216 9.672 2.406 10.210 Atomic orbital electron populations 1.22203 0.97293 1.01125 1.00851 1.21244 0.92760 0.94877 0.90242 1.22074 1.01032 0.93083 1.02680 1.22031 0.96865 0.89074 0.97651 1.60589 1.63883 1.03383 1.04956 1.21845 0.94327 0.98499 0.89771 1.18930 0.91831 0.83905 0.92791 1.00880 1.21572 1.26673 0.98595 1.08316 0.91547 1.25702 0.95424 0.98228 0.99399 1.70076 1.34592 1.12652 1.38868 0.85575 0.78136 0.78419 0.79937 1.19061 1.20820 1.21021 1.62225 1.58346 1.02305 1.00125 1.21851 0.94134 0.99308 0.93849 1.22869 0.99780 1.02321 0.95487 1.23386 1.03221 0.90031 1.02277 0.91141 0.94133 0.94399 0.92257 0.91115 0.90869 0.88867 0.95704 0.84423 0.91717 0.98379 0.93194 0.93107 0.90248 0.89262 0.87278 0.87103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.63 7.73 71.98 0.56 -5.08 16 2 C 0.10 3.48 0.68 3.53 0.00 3.48 16 3 C -0.13 -3.50 6.91 71.98 0.50 -3.00 16 4 C 0.07 2.51 5.41 86.31 0.47 2.98 16 5 N -0.70 -28.01 6.12 -513.44 -3.14 -31.15 16 6 C 0.09 4.22 5.81 86.31 0.50 4.73 16 7 C 0.23 12.03 1.47 44.17 0.06 12.10 16 8 H -0.03 -1.57 6.48 -2.39 -0.02 -1.59 16 9 C -0.51 -28.44 7.90 25.60 0.20 -28.24 16 10 H 0.07 3.65 5.72 -2.91 -0.02 3.63 16 11 C 0.01 0.61 5.33 84.66 0.45 1.06 16 12 N -0.92 -54.22 11.74 21.45 0.25 -53.97 16 13 Si 0.95 44.50 29.54 68.60 2.03 46.53 16 14 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 15 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 16 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 17 N -0.51 -21.55 4.43 -800.85 -3.55 -25.10 16 18 C 0.02 0.70 3.22 44.92 0.14 0.84 16 19 C -0.17 -5.98 8.95 30.59 0.27 -5.71 16 20 C -0.15 -4.44 7.87 30.59 0.24 -4.20 16 21 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 22 H 0.04 1.46 6.67 -2.39 -0.02 1.45 16 23 H 0.04 1.64 6.10 -2.39 -0.01 1.63 16 24 H 0.06 1.59 7.08 -2.39 -0.02 1.57 16 25 H 0.07 1.78 5.77 -2.38 -0.01 1.77 16 26 H 0.07 1.58 8.11 -2.39 -0.02 1.56 16 27 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.34 11.80 8.90 -89.70 -0.80 11.01 16 30 H 0.06 3.60 6.56 -2.39 -0.02 3.58 16 31 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 32 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 33 H 0.05 2.21 7.41 -2.39 -0.02 2.20 16 34 H 0.08 3.09 7.74 -2.38 -0.02 3.07 16 35 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 36 H 0.11 2.61 8.14 -2.38 -0.02 2.59 16 37 H 0.11 3.00 5.68 -2.39 -0.01 2.99 16 Total: -1.00 -62.38 273.80 -0.75 -63.14 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.26 Total: 21.59 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: 3.40 Total: -21.04 kcal Atomic # 7 Polarization: -103.78 SS G_CDS: -6.44 Total: -110.22 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -62.38 -0.75 -63.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219413782.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.379 kcal (2) G-P(sol) polarization free energy of solvation -62.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds