Wall clock time and date at job start Mon Mar 30 2020 02:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.48744 * 2 1 4 4 C 1.53048 * 109.48591 * 239.93892 * 2 1 3 5 5 N 1.46955 * 109.36749 * 298.43125 * 4 2 1 6 6 C 1.46959 * 110.87758 * 300.68492 * 5 4 2 7 7 C 1.53048 * 109.36875 * 59.31583 * 6 5 4 8 8 H 1.09002 * 109.50190 * 61.57756 * 7 6 5 9 9 C 1.50699 * 109.49214 * 181.63132 * 7 6 5 10 10 H 1.07994 * 120.00270 * 65.12854 * 9 7 6 11 11 C 1.37878 * 119.99860 * 245.13613 * 9 7 6 12 12 N 1.31511 * 120.00293 * 5.63393 * 11 9 7 13 13 Si 1.86804 * 119.99924 * 185.64321 * 11 9 7 14 14 H 1.48497 * 109.47126 * 179.97438 * 13 11 9 15 15 H 1.48504 * 109.46744 * 299.99611 * 13 11 9 16 16 H 1.48496 * 109.47346 * 59.99019 * 13 11 9 17 17 N 1.46950 * 109.48867 * 120.04506 * 2 1 3 18 18 C 1.46903 * 111.00100 * 296.77906 * 17 2 1 19 19 C 1.53001 * 117.49628 * 266.06746 * 18 17 2 20 20 C 1.52999 * 117.49484 * 197.41062 * 18 17 2 21 21 H 1.09006 * 109.46754 * 299.95277 * 1 2 3 22 22 H 1.08998 * 109.47174 * 59.95373 * 1 2 3 23 23 H 1.08997 * 109.46711 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47008 * 180.02562 * 3 2 1 25 25 H 1.08996 * 109.47201 * 300.05045 * 3 2 1 26 26 H 1.09007 * 109.46744 * 60.04693 * 3 2 1 27 27 H 1.09001 * 109.49421 * 58.40073 * 4 2 1 28 28 H 1.09003 * 109.48610 * 178.44579 * 4 2 1 29 29 H 1.00894 * 111.00391 * 176.81672 * 5 4 2 30 30 H 1.09007 * 109.49050 * 299.34583 * 6 5 4 31 31 H 1.08998 * 109.49092 * 179.28692 * 6 5 4 32 32 H 0.97005 * 120.00067 * 355.07399 * 12 11 9 33 33 H 1.08993 * 115.54576 * 51.74298 * 18 17 2 34 34 H 1.08999 * 117.50105 * 0.02562 * 19 18 17 35 35 H 1.08999 * 117.49209 * 145.02415 * 19 18 17 36 36 H 1.09005 * 117.49492 * 214.97791 * 20 18 17 37 37 H 1.08998 * 117.50379 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0406 -0.7227 -1.2487 5 7 1.5809 -2.1184 -1.2262 6 6 2.0712 -2.8120 -0.0270 7 6 1.5607 -2.0892 1.2218 8 1 0.4710 -2.1130 1.2360 9 6 2.0947 -2.7746 2.4531 10 1 3.1559 -2.7750 2.6535 11 6 1.2285 -3.4013 3.3236 12 7 -0.0487 -3.4976 3.0250 13 14 1.8689 -4.1135 4.9275 14 1 0.7457 -4.7283 5.6795 15 1 2.8943 -5.1472 4.6355 16 1 2.4758 -3.0307 5.7425 17 7 2.0203 -0.6936 1.1992 18 6 1.6135 0.0145 2.4203 19 6 2.6005 1.0208 3.0154 20 6 2.3601 -0.3204 3.7130 21 1 -0.3633 0.5131 0.8905 22 1 -0.3633 0.5145 -0.8895 23 1 -0.3632 -1.0277 -0.0005 24 1 3.1304 1.4420 -0.0005 25 1 1.6766 1.9565 -0.8895 26 1 1.6779 1.9560 0.8905 27 1 1.6544 -0.2270 -2.1394 28 1 3.1303 -0.6987 -1.2628 29 1 1.8604 -2.6047 -2.0649 30 1 3.1613 -2.8120 -0.0270 31 1 1.7073 -3.8394 -0.0268 32 1 -0.3942 -3.0662 2.2278 33 1 0.5511 0.2453 2.4979 34 1 3.5515 1.1576 2.5008 35 1 2.1873 1.9134 3.4851 36 1 1.7889 -0.3095 4.6414 37 1 3.1528 -1.0664 3.6577 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219413845.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:33 Heat of formation + Delta-G solvation = 39.445301 kcal Electronic energy + Delta-G solvation = -17101.765784 eV Core-core repulsion = 14686.937195 eV Total energy + Delta-G solvation = -2414.828589 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.27213 -35.74050 -33.80599 -32.69337 -30.56166 -26.73421 -26.73039 -25.19110 -23.38660 -21.31488 -20.83128 -20.05880 -17.63972 -16.97166 -15.35217 -15.11603 -14.52741 -14.06052 -13.87334 -13.70640 -13.35171 -12.69197 -12.59516 -12.13468 -11.69185 -11.57278 -11.32513 -11.03667 -10.82512 -10.73209 -10.56598 -10.47388 -10.19929 -9.93870 -9.66469 -9.39413 -8.89307 -8.61927 -8.29661 -7.80547 -7.13524 -6.31446 -4.02547 3.42733 3.43878 3.62333 4.48740 4.69866 4.84843 4.89475 5.35080 5.43582 5.66483 5.70992 5.85605 5.93045 5.98086 6.06409 6.11789 6.17698 6.25385 6.31903 6.33812 6.45411 6.52925 6.59200 6.64204 6.75136 6.88394 6.90977 7.04440 7.22545 7.38056 7.60344 7.93550 8.04561 8.22808 8.51620 8.59414 8.90909 9.67582 11.02665 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.028802 B = 0.012493 C = 0.010048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.925966 B = 2240.765477 C = 2785.988363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.105 3.895 3 C -0.133 4.133 4 C 0.077 3.923 5 N -0.696 5.696 6 C 0.073 3.927 7 C 0.194 3.806 8 H 0.033 0.967 9 C -0.571 4.571 10 H 0.051 0.949 11 C 0.029 3.971 12 N -0.910 5.910 13 Si 1.059 2.941 14 H -0.284 1.284 15 H -0.289 1.289 16 H -0.284 1.284 17 N -0.500 5.500 18 C 0.043 3.957 19 C -0.196 4.196 20 C -0.132 4.132 21 H 0.044 0.956 22 H 0.043 0.957 23 H 0.070 0.930 24 H 0.054 0.946 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.027 0.973 29 H 0.325 0.675 30 H 0.021 0.979 31 H 0.065 0.935 32 H 0.270 0.730 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.407 6.848 -4.424 8.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.015 3.985 3 C -0.191 4.191 4 C -0.053 4.053 5 N -0.326 5.326 6 C -0.056 4.056 7 C 0.088 3.912 8 H 0.050 0.950 9 C -0.611 4.611 10 H 0.070 0.930 11 C -0.176 4.176 12 N -0.548 5.548 13 Si 0.888 3.112 14 H -0.210 1.210 15 H -0.215 1.215 16 H -0.211 1.211 17 N -0.225 5.225 18 C -0.066 4.066 19 C -0.234 4.234 20 C -0.169 4.169 21 H 0.063 0.937 22 H 0.062 0.938 23 H 0.089 0.911 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.045 0.955 29 H 0.141 0.859 30 H 0.039 0.961 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.848 6.110 -2.833 7.312 hybrid contribution 0.500 0.758 -1.617 1.855 sum 3.348 6.868 -4.450 8.842 Atomic orbital electron populations 1.22297 0.97296 1.02823 0.99989 1.20991 0.92658 0.93211 0.91676 1.21826 1.01006 0.95400 1.00885 1.21868 0.96873 0.89787 0.96759 1.60685 1.63909 1.02577 1.05391 1.22281 0.96604 0.97395 0.89344 1.19560 0.95575 0.83291 0.92771 0.94960 1.21652 0.95057 1.36992 1.07378 0.93031 1.25716 0.94567 0.95334 1.02030 1.70828 1.14388 1.40748 1.28818 0.83695 0.75368 0.76434 0.75742 1.20974 1.21506 1.21059 1.62486 1.58513 1.03322 0.98206 1.21692 0.93098 0.99980 0.91851 1.23081 1.01255 0.93316 1.05722 1.22879 1.03489 0.96188 0.94353 0.93662 0.93802 0.91067 0.92717 0.93584 0.92236 0.91951 0.95464 0.85865 0.96093 0.91639 0.91708 0.91680 0.89508 0.90640 0.90631 0.87315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 7.72 37.16 0.29 -2.83 16 2 C 0.11 1.96 0.68 -131.54 -0.09 1.87 16 3 C -0.13 -2.12 7.89 37.16 0.29 -1.83 16 4 C 0.08 1.36 5.43 -3.77 -0.02 1.34 16 5 N -0.70 -13.10 6.22 -113.63 -0.71 -13.81 16 6 C 0.07 1.62 5.98 -3.77 -0.02 1.60 16 7 C 0.19 4.70 1.85 -68.81 -0.13 4.58 16 8 H 0.03 0.88 3.91 -51.93 -0.20 0.68 16 9 C -0.57 -15.05 5.39 -34.44 -0.19 -15.23 16 10 H 0.05 1.40 7.07 -52.49 -0.37 1.03 16 11 C 0.03 0.79 5.42 -17.82 -0.10 0.69 16 12 N -0.91 -26.61 13.65 55.43 0.76 -25.85 16 13 Si 1.06 24.49 29.91 -169.99 -5.08 19.41 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 N -0.50 -10.80 4.42 -204.49 -0.90 -11.70 16 18 C 0.04 0.91 3.52 -67.71 -0.24 0.67 16 19 C -0.20 -3.53 8.86 -26.69 -0.24 -3.77 16 20 C -0.13 -2.77 8.80 -26.69 -0.23 -3.00 16 21 H 0.04 0.86 6.43 -51.93 -0.33 0.53 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.07 1.54 5.94 -51.93 -0.31 1.23 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.95 6.29 -51.93 -0.33 0.63 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.33 5.25 8.90 -39.29 -0.35 4.90 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 32 H 0.27 7.99 6.27 -40.82 -0.26 7.74 16 33 H 0.07 1.46 6.49 -51.93 -0.34 1.12 16 34 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.11 2.48 6.27 -51.93 -0.33 2.15 16 LS Contribution 276.07 15.07 4.16 4.16 Total: -1.00 -27.86 276.07 -8.28 -36.15 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -5.83 Total: 7.57 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -0.67 Total: -15.93 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.85 Total: -51.36 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.08 Total: 19.41 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.86 -8.28 -36.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219413845.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.592 kcal (2) G-P(sol) polarization free energy of solvation -27.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds