Wall clock time and date at job start Mon Mar 30 2020 02:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.48744 * 2 1 4 4 C 1.53048 * 109.48591 * 239.93892 * 2 1 3 5 5 N 1.46955 * 109.36749 * 298.43125 * 4 2 1 6 6 C 1.46959 * 110.87758 * 300.68492 * 5 4 2 7 7 C 1.53048 * 109.36875 * 59.31583 * 6 5 4 8 8 H 1.09002 * 109.50190 * 61.57756 * 7 6 5 9 9 C 1.50699 * 109.49214 * 181.63132 * 7 6 5 10 10 H 1.07994 * 120.00270 * 65.12854 * 9 7 6 11 11 C 1.37878 * 119.99860 * 245.13613 * 9 7 6 12 12 N 1.31511 * 120.00293 * 5.63393 * 11 9 7 13 13 Si 1.86804 * 119.99924 * 185.64321 * 11 9 7 14 14 H 1.48497 * 109.47126 * 179.97438 * 13 11 9 15 15 H 1.48504 * 109.46744 * 299.99611 * 13 11 9 16 16 H 1.48496 * 109.47346 * 59.99019 * 13 11 9 17 17 N 1.46950 * 109.48867 * 120.04506 * 2 1 3 18 18 C 1.46903 * 111.00100 * 296.77906 * 17 2 1 19 19 C 1.53001 * 117.49628 * 266.06746 * 18 17 2 20 20 C 1.52999 * 117.49484 * 197.41062 * 18 17 2 21 21 H 1.09006 * 109.46754 * 299.95277 * 1 2 3 22 22 H 1.08998 * 109.47174 * 59.95373 * 1 2 3 23 23 H 1.08997 * 109.46711 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47008 * 180.02562 * 3 2 1 25 25 H 1.08996 * 109.47201 * 300.05045 * 3 2 1 26 26 H 1.09007 * 109.46744 * 60.04693 * 3 2 1 27 27 H 1.09001 * 109.49421 * 58.40073 * 4 2 1 28 28 H 1.09003 * 109.48610 * 178.44579 * 4 2 1 29 29 H 1.00894 * 111.00391 * 176.81672 * 5 4 2 30 30 H 1.09007 * 109.49050 * 299.34583 * 6 5 4 31 31 H 1.08998 * 109.49092 * 179.28692 * 6 5 4 32 32 H 0.97005 * 120.00067 * 355.07399 * 12 11 9 33 33 H 1.08993 * 115.54576 * 51.74298 * 18 17 2 34 34 H 1.08999 * 117.50105 * 0.02562 * 19 18 17 35 35 H 1.08999 * 117.49209 * 145.02415 * 19 18 17 36 36 H 1.09005 * 117.49492 * 214.97791 * 20 18 17 37 37 H 1.08998 * 117.50379 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0406 -0.7227 -1.2487 5 7 1.5809 -2.1184 -1.2262 6 6 2.0712 -2.8120 -0.0270 7 6 1.5607 -2.0892 1.2218 8 1 0.4710 -2.1130 1.2360 9 6 2.0947 -2.7746 2.4531 10 1 3.1559 -2.7750 2.6535 11 6 1.2285 -3.4013 3.3236 12 7 -0.0487 -3.4976 3.0250 13 14 1.8689 -4.1135 4.9275 14 1 0.7457 -4.7283 5.6795 15 1 2.8943 -5.1472 4.6355 16 1 2.4758 -3.0307 5.7425 17 7 2.0203 -0.6936 1.1992 18 6 1.6135 0.0145 2.4203 19 6 2.6005 1.0208 3.0154 20 6 2.3601 -0.3204 3.7130 21 1 -0.3633 0.5131 0.8905 22 1 -0.3633 0.5145 -0.8895 23 1 -0.3632 -1.0277 -0.0005 24 1 3.1304 1.4420 -0.0005 25 1 1.6766 1.9565 -0.8895 26 1 1.6779 1.9560 0.8905 27 1 1.6544 -0.2270 -2.1394 28 1 3.1303 -0.6987 -1.2628 29 1 1.8604 -2.6047 -2.0649 30 1 3.1613 -2.8120 -0.0270 31 1 1.7073 -3.8394 -0.0268 32 1 -0.3942 -3.0662 2.2278 33 1 0.5511 0.2453 2.4979 34 1 3.5515 1.1576 2.5008 35 1 2.1873 1.9134 3.4851 36 1 1.7889 -0.3095 4.6414 37 1 3.1528 -1.0664 3.6577 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219413845.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:33 Heat of formation + Delta-G solvation = 19.979207 kcal Electronic energy + Delta-G solvation = -17102.609898 eV Core-core repulsion = 14686.937195 eV Total energy + Delta-G solvation = -2415.672703 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.89476 -37.33806 -35.66611 -34.36370 -32.35333 -28.41962 -28.15458 -26.97814 -25.15705 -22.92747 -22.57634 -21.71247 -19.28061 -18.89112 -17.00883 -16.69267 -16.31303 -15.66835 -15.60622 -15.41596 -14.92608 -14.37888 -14.19859 -13.86754 -13.29517 -13.01482 -12.81549 -12.70118 -12.59682 -12.35967 -12.14485 -12.08353 -11.98744 -11.62791 -11.36398 -11.02803 -10.65848 -10.50109 -10.30014 -9.37422 -8.93115 -8.44373 -6.18183 1.53359 1.59360 1.77656 2.57810 3.00132 3.23682 3.34725 3.47051 3.93106 4.19614 4.22315 4.26570 4.36836 4.49018 4.58885 4.59389 4.67991 4.74191 4.79263 4.83809 4.89693 4.95351 5.03193 5.11851 5.19688 5.29203 5.33471 5.37566 5.53846 5.62954 5.89424 6.17654 6.19044 6.49801 6.61175 6.69188 6.89920 7.58718 8.85721 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.028802 B = 0.012493 C = 0.010048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.925966 B = 2240.765477 C = 2785.988363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.095 3.905 3 C -0.125 4.125 4 C 0.077 3.923 5 N -0.697 5.697 6 C 0.084 3.916 7 C 0.195 3.805 8 H 0.000 1.000 9 C -0.564 4.564 10 H 0.041 0.959 11 C -0.014 4.014 12 N -0.942 5.942 13 Si 1.096 2.904 14 H -0.291 1.291 15 H -0.274 1.274 16 H -0.266 1.266 17 N -0.501 5.501 18 C 0.022 3.978 19 C -0.150 4.150 20 C -0.151 4.151 21 H 0.035 0.965 22 H 0.070 0.930 23 H 0.036 0.964 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.095 0.905 28 H 0.029 0.971 29 H 0.344 0.656 30 H 0.014 0.986 31 H 0.045 0.955 32 H 0.255 0.745 33 H 0.048 0.952 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.073 0.927 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.640 8.739 -5.202 11.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.005 3.995 3 C -0.182 4.182 4 C -0.052 4.052 5 N -0.328 5.328 6 C -0.046 4.046 7 C 0.088 3.912 8 H 0.018 0.982 9 C -0.603 4.603 10 H 0.059 0.941 11 C -0.213 4.213 12 N -0.582 5.582 13 Si 0.919 3.081 14 H -0.217 1.217 15 H -0.200 1.200 16 H -0.191 1.191 17 N -0.226 5.226 18 C -0.087 4.087 19 C -0.187 4.187 20 C -0.188 4.188 21 H 0.054 0.946 22 H 0.089 0.911 23 H 0.055 0.945 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.113 0.887 28 H 0.047 0.953 29 H 0.162 0.838 30 H 0.033 0.967 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.114 0.886 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.108 8.020 -3.638 9.718 hybrid contribution 0.121 0.222 -1.452 1.474 sum 4.229 8.242 -5.090 10.570 Atomic orbital electron populations 1.22190 0.97673 1.00780 1.00831 1.21264 0.92446 0.95012 0.90735 1.21752 1.01135 0.93111 1.02248 1.21983 0.97049 0.88722 0.97482 1.60565 1.63918 1.03473 1.04845 1.21932 0.95812 0.96509 0.90342 1.19397 0.93547 0.85328 0.92928 0.98247 1.21800 0.94288 1.36239 1.07972 0.94092 1.26834 0.94159 0.95731 1.04577 1.70948 1.15591 1.42780 1.28845 0.83223 0.75090 0.76763 0.72986 1.21715 1.20004 1.19065 1.62412 1.58307 1.02218 0.99679 1.21730 0.92973 1.02114 0.91851 1.23091 1.00303 0.92620 1.02716 1.22772 1.03263 0.98275 0.94494 0.94585 0.91072 0.94533 0.92372 0.90739 0.92434 0.88692 0.95313 0.83828 0.96726 0.93597 0.93337 0.93470 0.88575 0.87698 0.90807 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.74 7.72 71.99 0.56 -5.18 16 2 C 0.10 3.37 0.68 3.54 0.00 3.37 16 3 C -0.12 -3.50 7.89 71.98 0.57 -2.93 16 4 C 0.08 2.50 5.43 86.31 0.47 2.97 16 5 N -0.70 -25.46 6.22 -513.43 -3.19 -28.65 16 6 C 0.08 3.77 5.98 86.31 0.52 4.29 16 7 C 0.19 9.67 1.85 44.17 0.08 9.75 16 8 H 0.00 -0.01 3.91 -2.39 -0.01 -0.02 16 9 C -0.56 -30.37 5.39 25.60 0.14 -30.24 16 10 H 0.04 2.26 7.07 -2.91 -0.02 2.24 16 11 C -0.01 -0.78 5.42 84.66 0.46 -0.32 16 12 N -0.94 -57.15 13.65 21.45 0.29 -56.86 16 13 Si 1.10 49.91 29.91 68.60 2.05 51.96 16 14 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 15 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 16 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 17 N -0.50 -21.37 4.42 -800.88 -3.54 -24.92 16 18 C 0.02 0.94 3.52 44.92 0.16 1.10 16 19 C -0.15 -5.01 8.86 30.62 0.27 -4.74 16 20 C -0.15 -6.25 8.80 30.62 0.27 -5.98 16 21 H 0.04 1.36 6.43 -2.38 -0.02 1.34 16 22 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 23 H 0.04 1.59 5.94 -2.39 -0.01 1.57 16 24 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.06 1.64 6.29 -2.38 -0.01 1.62 16 27 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.34 10.50 8.90 -89.70 -0.80 9.70 16 30 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.25 15.91 6.27 -92.70 -0.58 15.33 16 33 H 0.05 2.14 6.49 -2.39 -0.02 2.13 16 34 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 35 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 36 H 0.07 3.02 8.14 -2.38 -0.02 3.01 16 37 H 0.09 3.99 6.27 -2.39 -0.01 3.98 16 Total: -1.00 -61.78 276.07 -0.46 -62.24 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.44 Total: 24.13 kcal Atomic # 6 Polarization: -31.39 SS G_CDS: 3.49 Total: -27.90 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -6.44 Total: -110.43 kcal Atomic # 14 Polarization: 49.91 SS G_CDS: 2.05 Total: 51.96 kcal Total: -61.78 -0.46 -62.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219413845.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.223 kcal (2) G-P(sol) polarization free energy of solvation -61.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds