Wall clock time and date at job start Mon Mar 30 2020 02:42:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31001 * 1
3 3 C 1.50695 * 120.00267 * 2 1
4 4 N 1.46897 * 109.47249 * 124.99544 * 3 2 1
5 5 C 1.46953 * 111.00149 * 46.20035 * 4 3 2
6 6 C 1.53046 * 109.36554 * 183.18560 * 5 4 3
7 7 C 1.52999 * 109.48878 * 181.63164 * 6 5 4
8 8 C 1.53002 * 109.50810 * 61.57760 * 6 5 4
9 9 N 1.46954 * 109.36715 * 301.59781 * 6 5 4
10 10 C 1.46957 * 110.87842 * 59.32473 * 9 6 5
11 11 C 1.46963 * 110.99878 * 170.00183 * 4 3 2
12 12 H 1.08998 * 109.48714 * 296.77503 * 11 4 3
13 13 C 1.50692 * 109.49333 * 56.84462 * 11 4 3
14 14 H 1.08008 * 119.99875 * 359.88816 * 13 11 4
15 15 C 1.37872 * 120.00585 * 179.89276 * 13 11 4
16 16 N 1.31518 * 119.99749 * 359.97438 * 15 13 11
17 17 Si 1.86797 * 120.00435 * 180.02562 * 15 13 11
18 18 H 1.48500 * 109.47147 * 59.99783 * 17 15 13
19 19 H 1.48505 * 109.47228 * 179.97438 * 17 15 13
20 20 H 1.48506 * 109.46809 * 299.99727 * 17 15 13
21 21 H 1.08002 * 119.99801 * 0.02562 * 1 2 3
22 22 H 1.08000 * 120.00387 * 180.02562 * 1 2 3
23 23 H 1.08002 * 119.99801 * 179.97438 * 2 1 3
24 24 H 1.09004 * 109.46977 * 4.99344 * 3 2 1
25 25 H 1.08998 * 109.47084 * 244.99936 * 3 2 1
26 26 H 1.09002 * 109.48895 * 63.22004 * 5 4 3
27 27 H 1.08999 * 109.50698 * 303.16391 * 5 4 3
28 28 H 1.09009 * 109.47314 * 179.89690 * 7 6 5
29 29 H 1.09005 * 109.47457 * 299.89171 * 7 6 5
30 30 H 1.08996 * 109.47406 * 59.89502 * 7 6 5
31 31 H 1.09002 * 109.47186 * 300.09768 * 8 6 5
32 32 H 1.09008 * 109.47009 * 60.09291 * 8 6 5
33 33 H 1.09000 * 109.47759 * 180.09332 * 8 6 5
34 34 H 1.00893 * 111.00222 * 295.45021 * 9 6 5
35 35 H 1.09000 * 109.48960 * 180.71475 * 10 9 6
36 36 H 1.08993 * 109.51060 * 60.65672 * 10 9 6
37 37 H 0.97003 * 120.00189 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3050 0.0000
4 7 2.9963 1.3319 1.1345
5 6 3.7427 0.0699 1.2327
6 6 4.6427 0.1076 2.4700
7 6 5.4514 -1.1886 2.5526
8 6 3.7799 0.2517 3.7253
9 7 5.5594 1.2519 2.3711
10 6 4.8130 2.5139 2.2731
11 6 3.9129 2.4764 1.0357
12 1 4.5280 2.3735 0.1417
13 6 3.1165 3.7530 0.9544
14 1 2.0371 3.7182 0.9723
15 6 3.7655 4.9655 0.8570
16 7 5.0798 5.0080 0.8356
17 14 2.7782 6.5481 0.7570
18 1 1.9401 6.6866 1.9751
19 1 3.7049 7.7045 0.6602
20 1 1.9046 6.5114 -0.4434
21 1 -0.5400 0.9353 -0.0004
22 1 -0.5401 -0.9353 0.0004
23 1 1.8500 -0.9353 0.0004
24 1 1.3586 2.1316 0.0895
25 1 2.6213 1.4025 -0.9314
26 1 4.3558 -0.0603 0.3409
27 1 3.0427 -0.7613 1.3174
28 1 6.0938 -1.1607 3.4329
29 1 4.7713 -2.0373 2.6259
30 1 6.0655 -1.2914 1.6579
31 1 3.2033 1.1748 3.6658
32 1 3.1000 -0.5972 3.7983
33 1 4.4215 0.2801 4.6060
34 1 6.1904 1.1434 1.5914
35 1 5.5132 3.3449 2.1882
36 1 4.2000 2.6446 3.1648
37 1 5.5365 5.8611 0.7675
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000219414358.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:42:56
Heat of formation + Delta-G solvation = 29.493334 kcal
Electronic energy + Delta-G solvation = -16555.617412 eV
Core-core repulsion = 14140.357273 eV
Total energy + Delta-G solvation = -2415.260139 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 224.158 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-39.05206 -35.35279 -33.65849 -31.83108 -30.94787 -27.43487 -26.86856 -25.90357
-24.04276 -22.72126 -20.27063 -19.16106 -18.14668 -16.46584 -15.34731 -15.05102
-14.84932 -14.05034 -14.01237 -13.48436 -13.35963 -12.68635 -12.50856 -12.19153
-11.76342 -11.54718 -11.42398 -11.28848 -10.96556 -10.80391 -10.63296 -10.57655
-10.30035 -10.08173 -10.03261 -9.64943 -9.27434 -9.03798 -8.51367 -7.45567
-7.10762 -6.07568 -4.10829 2.63464 3.29519 3.34355 3.37058 4.36953
4.88798 5.08002 5.26018 5.30895 5.49082 5.56498 5.68344 5.71688
5.98138 6.07678 6.15001 6.16362 6.25252 6.34008 6.42927 6.45444
6.52626 6.70430 6.81427 6.94427 6.97830 7.01706 7.20123 7.25348
7.61729 7.76578 7.94476 8.11353 8.15897 8.39727 8.55830 8.94698
9.53668 10.99583
Molecular weight = 224.16amu
Principal moments of inertia in cm(-1)
A = 0.022763 B = 0.011173 C = 0.008182
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1229.755444 B = 2505.417168 C = 3421.142520
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.142 4.142
3 C 0.091 3.909
4 N -0.523 5.523
5 C 0.027 3.973
6 C 0.109 3.891
7 C -0.136 4.136
8 C -0.125 4.125
9 N -0.688 5.688
10 C 0.065 3.935
11 C 0.187 3.813
12 H -0.004 1.004
13 C -0.505 4.505
14 H 0.062 0.938
15 C 0.061 3.939
16 N -0.893 5.893
17 Si 0.898 3.102
18 H -0.276 1.276
19 H -0.287 1.287
20 H -0.278 1.278
21 H 0.096 0.904
22 H 0.089 0.911
23 H 0.101 0.899
24 H 0.084 0.916
25 H 0.032 0.968
26 H 0.015 0.985
27 H 0.065 0.935
28 H 0.060 0.940
29 H 0.052 0.948
30 H 0.047 0.953
31 H 0.074 0.926
32 H 0.043 0.957
33 H 0.047 0.953
34 H 0.327 0.673
35 H 0.106 0.894
36 H 0.060 0.940
37 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.555 -9.282 0.750 9.656
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.238 4.238
2 C -0.160 4.160
3 C -0.037 4.037
4 N -0.248 5.248
5 C -0.103 4.103
6 C 0.018 3.982
7 C -0.194 4.194
8 C -0.183 4.183
9 N -0.316 5.316
10 C -0.064 4.064
11 C 0.079 3.921
12 H 0.013 0.987
13 C -0.544 4.544
14 H 0.080 0.920
15 C -0.141 4.141
16 N -0.532 5.532
17 Si 0.726 3.274
18 H -0.201 1.201
19 H -0.213 1.213
20 H -0.204 1.204
21 H 0.114 0.886
22 H 0.108 0.892
23 H 0.119 0.881
24 H 0.102 0.898
25 H 0.050 0.950
26 H 0.033 0.967
27 H 0.083 0.917
28 H 0.079 0.921
29 H 0.071 0.929
30 H 0.066 0.934
31 H 0.093 0.907
32 H 0.062 0.938
33 H 0.066 0.934
34 H 0.143 0.857
35 H 0.124 0.876
36 H 0.078 0.922
37 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -2.562 -9.015 1.874 9.557
hybrid contribution -0.353 0.691 -1.879 2.033
sum -2.915 -8.324 -0.005 8.819
Atomic orbital electron populations
1.23700 0.95884 1.01214 1.02989 1.23181 0.96101 0.98789 0.97968
1.21118 0.95735 0.94303 0.92522 1.62353 1.19372 1.02305 1.40731
1.22849 0.96312 0.94171 0.96963 1.20917 0.91576 0.91161 0.94596
1.21803 0.99639 0.96301 1.01653 1.21685 0.98522 1.02339 0.95719
1.61013 1.19742 1.02834 1.48048 1.22340 0.96735 0.89791 0.97514
1.19954 0.90370 0.87623 0.94165 0.98698 1.21028 0.93243 0.89926
1.50245 0.91962 1.24935 0.94963 0.99128 0.95032 1.69844 1.06942
1.25949 1.50425 0.86558 0.79734 0.82490 0.78632 1.20138 1.21304
1.20409 0.88614 0.89231 0.88134 0.89816 0.95028 0.96662 0.91695
0.92083 0.92917 0.93410 0.90729 0.93792 0.93411 0.85729 0.87621
0.92199 0.92744
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -2.89 14.32 29.01 0.42 -2.48 16
2 C -0.14 -2.31 8.57 -36.03 -0.31 -2.62 16
3 C 0.09 1.80 5.15 -4.98 -0.03 1.78 16
4 N -0.52 -11.16 3.98 -229.32 -0.91 -12.08 16
5 C 0.03 0.51 3.79 -3.77 -0.01 0.49 16
6 C 0.11 1.94 0.95 -131.55 -0.12 1.82 16
7 C -0.14 -1.96 8.73 37.16 0.32 -1.64 16
8 C -0.13 -2.20 8.12 37.16 0.30 -1.89 16
9 N -0.69 -13.88 6.35 -99.83 -0.63 -14.51 16
10 C 0.06 1.54 5.37 -3.76 -0.02 1.52 16
11 C 0.19 4.60 1.90 -68.80 -0.13 4.47 16
12 H 0.00 -0.12 8.14 -51.93 -0.42 -0.55 16
13 C -0.51 -13.54 8.02 -34.45 -0.28 -13.82 16
14 H 0.06 1.67 6.50 -52.48 -0.34 1.33 16
15 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16
16 N -0.89 -24.81 11.34 55.43 0.63 -24.18 16
17 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16
18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16
19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16
20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16
21 H 0.10 1.38 7.84 -52.49 -0.41 0.97 16
22 H 0.09 1.09 8.06 -52.49 -0.42 0.67 16
23 H 0.10 1.52 6.53 -52.49 -0.34 1.18 16
24 H 0.08 1.77 6.33 -51.93 -0.33 1.44 16
25 H 0.03 0.66 8.08 -51.93 -0.42 0.25 16
26 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16
27 H 0.06 1.10 5.96 -51.93 -0.31 0.79 16
28 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16
29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
31 H 0.07 1.51 5.95 -51.93 -0.31 1.20 16
32 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16
33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16
34 H 0.33 6.51 8.79 -39.30 -0.35 6.17 16
35 H 0.11 2.79 6.12 -51.93 -0.32 2.48 16
36 H 0.06 1.48 6.35 -51.93 -0.33 1.15 16
37 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16
LS Contribution 284.58 15.07 4.29 4.29
Total: -1.00 -26.92 284.58 -7.58 -34.49
By element:
Atomic # 1 Polarization: 12.73 SS G_CDS: -5.97 Total: 6.76 kcal
Atomic # 6 Polarization: -10.86 SS G_CDS: 0.05 Total: -10.81 kcal
Atomic # 7 Polarization: -49.86 SS G_CDS: -0.92 Total: -50.77 kcal
Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal
Total LS contribution 4.29 Total: 4.29 kcal
Total: -26.92 -7.58 -34.49 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000219414358.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.986 kcal
(2) G-P(sol) polarization free energy of solvation -26.917 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.069 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.492 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.493 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds