Wall clock time and date at job start Mon Mar 30 2020 02:42:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31001 * 1
3 3 C 1.50695 * 120.00267 * 2 1
4 4 N 1.46897 * 109.47249 * 124.99544 * 3 2 1
5 5 C 1.46953 * 111.00149 * 46.20035 * 4 3 2
6 6 C 1.53046 * 109.36554 * 183.18560 * 5 4 3
7 7 C 1.52999 * 109.48878 * 181.63164 * 6 5 4
8 8 C 1.53002 * 109.50810 * 61.57760 * 6 5 4
9 9 N 1.46954 * 109.36715 * 301.59781 * 6 5 4
10 10 C 1.46957 * 110.87842 * 59.32473 * 9 6 5
11 11 C 1.46963 * 110.99878 * 170.00183 * 4 3 2
12 12 H 1.08998 * 109.48714 * 296.77503 * 11 4 3
13 13 C 1.50692 * 109.49333 * 56.84462 * 11 4 3
14 14 H 1.08008 * 119.99875 * 359.88816 * 13 11 4
15 15 C 1.37872 * 120.00585 * 179.89276 * 13 11 4
16 16 N 1.31518 * 119.99749 * 359.97438 * 15 13 11
17 17 Si 1.86797 * 120.00435 * 180.02562 * 15 13 11
18 18 H 1.48500 * 109.47147 * 59.99783 * 17 15 13
19 19 H 1.48505 * 109.47228 * 179.97438 * 17 15 13
20 20 H 1.48506 * 109.46809 * 299.99727 * 17 15 13
21 21 H 1.08002 * 119.99801 * 0.02562 * 1 2 3
22 22 H 1.08000 * 120.00387 * 180.02562 * 1 2 3
23 23 H 1.08002 * 119.99801 * 179.97438 * 2 1 3
24 24 H 1.09004 * 109.46977 * 4.99344 * 3 2 1
25 25 H 1.08998 * 109.47084 * 244.99936 * 3 2 1
26 26 H 1.09002 * 109.48895 * 63.22004 * 5 4 3
27 27 H 1.08999 * 109.50698 * 303.16391 * 5 4 3
28 28 H 1.09009 * 109.47314 * 179.89690 * 7 6 5
29 29 H 1.09005 * 109.47457 * 299.89171 * 7 6 5
30 30 H 1.08996 * 109.47406 * 59.89502 * 7 6 5
31 31 H 1.09002 * 109.47186 * 300.09768 * 8 6 5
32 32 H 1.09008 * 109.47009 * 60.09291 * 8 6 5
33 33 H 1.09000 * 109.47759 * 180.09332 * 8 6 5
34 34 H 1.00893 * 111.00222 * 295.45021 * 9 6 5
35 35 H 1.09000 * 109.48960 * 180.71475 * 10 9 6
36 36 H 1.08993 * 109.51060 * 60.65672 * 10 9 6
37 37 H 0.97003 * 120.00189 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3050 0.0000
4 7 2.9963 1.3319 1.1345
5 6 3.7427 0.0699 1.2327
6 6 4.6427 0.1076 2.4700
7 6 5.4514 -1.1886 2.5526
8 6 3.7799 0.2517 3.7253
9 7 5.5594 1.2519 2.3711
10 6 4.8130 2.5139 2.2731
11 6 3.9129 2.4764 1.0357
12 1 4.5280 2.3735 0.1417
13 6 3.1165 3.7530 0.9544
14 1 2.0371 3.7182 0.9723
15 6 3.7655 4.9655 0.8570
16 7 5.0798 5.0080 0.8356
17 14 2.7782 6.5481 0.7570
18 1 1.9401 6.6866 1.9751
19 1 3.7049 7.7045 0.6602
20 1 1.9046 6.5114 -0.4434
21 1 -0.5400 0.9353 -0.0004
22 1 -0.5401 -0.9353 0.0004
23 1 1.8500 -0.9353 0.0004
24 1 1.3586 2.1316 0.0895
25 1 2.6213 1.4025 -0.9314
26 1 4.3558 -0.0603 0.3409
27 1 3.0427 -0.7613 1.3174
28 1 6.0938 -1.1607 3.4329
29 1 4.7713 -2.0373 2.6259
30 1 6.0655 -1.2914 1.6579
31 1 3.2033 1.1748 3.6658
32 1 3.1000 -0.5972 3.7983
33 1 4.4215 0.2801 4.6060
34 1 6.1904 1.1434 1.5914
35 1 5.5132 3.3449 2.1882
36 1 4.2000 2.6446 3.1648
37 1 5.5365 5.8611 0.7675
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000219414358.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:42:56
Heat of formation + Delta-G solvation = 11.069290 kcal
Electronic energy + Delta-G solvation = -16556.416338 eV
Core-core repulsion = 14140.357273 eV
Total energy + Delta-G solvation = -2416.059066 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 224.158 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.68752 -36.84614 -35.49631 -33.46946 -32.61231 -29.22289 -28.21508 -27.42519
-25.91142 -24.34978 -22.02342 -20.55501 -19.70881 -18.50270 -17.05229 -16.57819
-16.48220 -15.74007 -15.63363 -15.14032 -14.86024 -14.28898 -14.13341 -13.77813
-13.33272 -12.97718 -12.82004 -12.75296 -12.72289 -12.62889 -12.28963 -12.04477
-12.00229 -11.77003 -11.70027 -11.41386 -11.05369 -10.61644 -10.34806 -9.18305
-8.84911 -8.15424 -6.25830 1.39452 1.40602 1.41844 1.49423 2.39414
3.12106 3.30052 3.55059 3.98949 4.09764 4.21153 4.28378 4.31670
4.56325 4.65742 4.70982 4.80285 4.86083 4.93330 4.98568 5.02796
5.07486 5.15129 5.19474 5.33577 5.37664 5.52717 5.64662 5.70184
5.72154 5.93751 6.08837 6.29137 6.40893 6.64082 6.70503 6.88411
7.42164 8.90342
Molecular weight = 224.16amu
Principal moments of inertia in cm(-1)
A = 0.022763 B = 0.011173 C = 0.008182
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1229.755444 B = 2505.417168 C = 3421.142520
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C -0.162 4.162
3 C 0.093 3.907
4 N -0.528 5.528
5 C 0.029 3.971
6 C 0.103 3.897
7 C -0.127 4.127
8 C -0.119 4.119
9 N -0.684 5.684
10 C 0.083 3.917
11 C 0.196 3.804
12 H -0.046 1.046
13 C -0.522 4.522
14 H 0.055 0.945
15 C 0.016 3.984
16 N -0.917 5.917
17 Si 0.959 3.041
18 H -0.271 1.271
19 H -0.283 1.283
20 H -0.274 1.274
21 H 0.091 0.909
22 H 0.124 0.876
23 H 0.119 0.881
24 H 0.063 0.937
25 H 0.009 0.991
26 H 0.007 0.993
27 H 0.092 0.908
28 H 0.066 0.934
29 H 0.078 0.922
30 H 0.051 0.949
31 H 0.041 0.959
32 H 0.069 0.931
33 H 0.053 0.947
34 H 0.327 0.673
35 H 0.074 0.926
36 H 0.046 0.954
37 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.746 -11.118 1.212 11.795
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.180 4.180
3 C -0.034 4.034
4 N -0.252 5.252
5 C -0.101 4.101
6 C 0.011 3.989
7 C -0.185 4.185
8 C -0.177 4.177
9 N -0.313 5.313
10 C -0.047 4.047
11 C 0.087 3.913
12 H -0.029 1.029
13 C -0.561 4.561
14 H 0.073 0.927
15 C -0.184 4.184
16 N -0.556 5.556
17 Si 0.785 3.215
18 H -0.196 1.196
19 H -0.208 1.208
20 H -0.199 1.199
21 H 0.110 0.890
22 H 0.142 0.858
23 H 0.137 0.863
24 H 0.081 0.919
25 H 0.027 0.973
26 H 0.025 0.975
27 H 0.110 0.890
28 H 0.085 0.915
29 H 0.097 0.903
30 H 0.070 0.930
31 H 0.060 0.940
32 H 0.088 0.912
33 H 0.072 0.928
34 H 0.143 0.857
35 H 0.092 0.908
36 H 0.065 0.935
37 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -3.759 -10.876 2.338 11.742
hybrid contribution -0.038 1.220 -2.037 2.375
sum -3.797 -9.656 0.301 10.380
Atomic orbital electron populations
1.23965 0.95212 1.02652 0.99341 1.22980 0.96627 0.97212 1.01187
1.21036 0.95133 0.96214 0.91022 1.62295 1.19010 1.02568 1.41328
1.22948 0.96708 0.93396 0.96998 1.21173 0.91624 0.91723 0.94358
1.21735 0.99786 0.94769 1.02213 1.21626 0.98600 1.01714 0.95752
1.60987 1.19918 1.02485 1.47885 1.21892 0.95734 0.90768 0.96278
1.19706 0.90347 0.88588 0.92663 1.02878 1.21288 0.93124 0.91294
1.50407 0.92658 1.25687 0.95900 1.02113 0.94681 1.69979 1.08192
1.26540 1.50875 0.85596 0.78436 0.78788 0.78725 1.19638 1.20804
1.19915 0.89026 0.85831 0.86338 0.91894 0.97260 0.97461 0.89011
0.91489 0.90304 0.92956 0.94001 0.91250 0.92766 0.85683 0.90757
0.93516 0.92783
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.51 14.32 67.78 0.97 -3.54 16
2 C -0.16 -4.95 8.57 25.64 0.22 -4.73 16
3 C 0.09 3.78 5.15 85.56 0.44 4.22 16
4 N -0.53 -22.82 3.98 -879.44 -3.50 -26.32 16
5 C 0.03 1.05 3.79 86.31 0.33 1.37 16
6 C 0.10 3.48 0.95 3.53 0.00 3.49 16
7 C -0.13 -3.26 8.73 71.98 0.63 -2.63 16
8 C -0.12 -3.97 8.12 71.98 0.58 -3.38 16
9 N -0.68 -27.79 6.35 -469.76 -2.98 -30.77 16
10 C 0.08 4.09 5.37 86.31 0.46 4.56 16
11 C 0.20 10.06 1.90 44.17 0.08 10.15 16
12 H -0.05 -2.70 8.14 -2.39 -0.02 -2.72 16
13 C -0.52 -29.02 8.02 25.60 0.21 -28.81 16
14 H 0.06 3.08 6.50 -2.91 -0.02 3.06 16
15 C 0.02 0.86 5.30 84.65 0.45 1.31 16
16 N -0.92 -52.66 11.34 21.45 0.24 -52.42 16
17 Si 0.96 43.95 29.54 68.60 2.03 45.97 16
18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16
19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16
20 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16
21 H 0.09 2.45 7.84 -2.91 -0.02 2.43 16
22 H 0.12 2.42 8.06 -2.91 -0.02 2.40 16
23 H 0.12 3.21 6.53 -2.91 -0.02 3.19 16
24 H 0.06 2.74 6.33 -2.38 -0.02 2.73 16
25 H 0.01 0.41 8.08 -2.39 -0.02 0.39 16
26 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16
27 H 0.09 2.82 5.96 -2.39 -0.01 2.81 16
28 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16
29 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16
30 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16
31 H 0.04 1.66 5.95 -2.39 -0.01 1.65 16
32 H 0.07 1.93 8.14 -2.38 -0.02 1.92 16
33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16
34 H 0.33 13.22 8.79 -89.70 -0.79 12.43 16
35 H 0.07 4.12 6.12 -2.39 -0.01 4.11 16
36 H 0.05 2.39 6.35 -2.39 -0.02 2.38 16
37 H 0.26 14.44 8.31 -92.71 -0.77 13.66 16
Total: -1.00 -60.00 284.58 0.41 -59.58
By element:
Atomic # 1 Polarization: 21.71 SS G_CDS: 0.25 Total: 21.96 kcal
Atomic # 6 Polarization: -22.39 SS G_CDS: 4.38 Total: -18.01 kcal
Atomic # 7 Polarization: -103.27 SS G_CDS: -6.24 Total: -109.51 kcal
Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal
Total: -60.00 0.41 -59.58 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000219414358.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.652 kcal
(2) G-P(sol) polarization free energy of solvation -59.997 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.656 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.583 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.069 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds