Wall clock time and date at job start Mon Mar 30 2020 02:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 120.00267 * 2 1 4 4 N 1.46897 * 109.47249 * 124.99544 * 3 2 1 5 5 C 1.46953 * 111.00149 * 46.20035 * 4 3 2 6 6 C 1.53046 * 109.36554 * 183.18560 * 5 4 3 7 7 C 1.52999 * 109.48878 * 181.63164 * 6 5 4 8 8 C 1.53002 * 109.50810 * 61.57760 * 6 5 4 9 9 N 1.46954 * 109.36715 * 301.59781 * 6 5 4 10 10 C 1.46957 * 110.87842 * 59.32473 * 9 6 5 11 11 C 1.46963 * 110.99878 * 170.00183 * 4 3 2 12 12 H 1.08998 * 109.48714 * 296.77503 * 11 4 3 13 13 C 1.50692 * 109.49333 * 56.84462 * 11 4 3 14 14 H 1.08008 * 119.99875 * 359.88816 * 13 11 4 15 15 C 1.37872 * 120.00585 * 179.89276 * 13 11 4 16 16 N 1.31518 * 119.99749 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 120.00435 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47147 * 59.99783 * 17 15 13 19 19 H 1.48505 * 109.47228 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46809 * 299.99727 * 17 15 13 21 21 H 1.08002 * 119.99801 * 0.02562 * 1 2 3 22 22 H 1.08000 * 120.00387 * 180.02562 * 1 2 3 23 23 H 1.08002 * 119.99801 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.46977 * 4.99344 * 3 2 1 25 25 H 1.08998 * 109.47084 * 244.99936 * 3 2 1 26 26 H 1.09002 * 109.48895 * 63.22004 * 5 4 3 27 27 H 1.08999 * 109.50698 * 303.16391 * 5 4 3 28 28 H 1.09009 * 109.47314 * 179.89690 * 7 6 5 29 29 H 1.09005 * 109.47457 * 299.89171 * 7 6 5 30 30 H 1.08996 * 109.47406 * 59.89502 * 7 6 5 31 31 H 1.09002 * 109.47186 * 300.09768 * 8 6 5 32 32 H 1.09008 * 109.47009 * 60.09291 * 8 6 5 33 33 H 1.09000 * 109.47759 * 180.09332 * 8 6 5 34 34 H 1.00893 * 111.00222 * 295.45021 * 9 6 5 35 35 H 1.09000 * 109.48960 * 180.71475 * 10 9 6 36 36 H 1.08993 * 109.51060 * 60.65672 * 10 9 6 37 37 H 0.97003 * 120.00189 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9963 1.3319 1.1345 5 6 3.7427 0.0699 1.2327 6 6 4.6427 0.1076 2.4700 7 6 5.4514 -1.1886 2.5526 8 6 3.7799 0.2517 3.7253 9 7 5.5594 1.2519 2.3711 10 6 4.8130 2.5139 2.2731 11 6 3.9129 2.4764 1.0357 12 1 4.5280 2.3735 0.1417 13 6 3.1165 3.7530 0.9544 14 1 2.0371 3.7182 0.9723 15 6 3.7655 4.9655 0.8570 16 7 5.0798 5.0080 0.8356 17 14 2.7782 6.5481 0.7570 18 1 1.9401 6.6866 1.9751 19 1 3.7049 7.7045 0.6602 20 1 1.9046 6.5114 -0.4434 21 1 -0.5400 0.9353 -0.0004 22 1 -0.5401 -0.9353 0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3586 2.1316 0.0895 25 1 2.6213 1.4025 -0.9314 26 1 4.3558 -0.0603 0.3409 27 1 3.0427 -0.7613 1.3174 28 1 6.0938 -1.1607 3.4329 29 1 4.7713 -2.0373 2.6259 30 1 6.0655 -1.2914 1.6579 31 1 3.2033 1.1748 3.6658 32 1 3.1000 -0.5972 3.7983 33 1 4.4215 0.2801 4.6060 34 1 6.1904 1.1434 1.5914 35 1 5.5132 3.3449 2.1882 36 1 4.2000 2.6446 3.1648 37 1 5.5365 5.8611 0.7675 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219414358.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:56 Heat of formation + Delta-G solvation = 11.069290 kcal Electronic energy + Delta-G solvation = -16556.416338 eV Core-core repulsion = 14140.357273 eV Total energy + Delta-G solvation = -2416.059066 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.68752 -36.84614 -35.49631 -33.46946 -32.61231 -29.22289 -28.21508 -27.42519 -25.91142 -24.34978 -22.02342 -20.55501 -19.70881 -18.50270 -17.05229 -16.57819 -16.48220 -15.74007 -15.63363 -15.14032 -14.86024 -14.28898 -14.13341 -13.77813 -13.33272 -12.97718 -12.82004 -12.75296 -12.72289 -12.62889 -12.28963 -12.04477 -12.00229 -11.77003 -11.70027 -11.41386 -11.05369 -10.61644 -10.34806 -9.18305 -8.84911 -8.15424 -6.25830 1.39452 1.40602 1.41844 1.49423 2.39414 3.12106 3.30052 3.55059 3.98949 4.09764 4.21153 4.28378 4.31670 4.56325 4.65742 4.70982 4.80285 4.86083 4.93330 4.98568 5.02796 5.07486 5.15129 5.19474 5.33577 5.37664 5.52717 5.64662 5.70184 5.72154 5.93751 6.08837 6.29137 6.40893 6.64082 6.70503 6.88411 7.42164 8.90342 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.022763 B = 0.011173 C = 0.008182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.755444 B = 2505.417168 C = 3421.142520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.162 4.162 3 C 0.093 3.907 4 N -0.528 5.528 5 C 0.029 3.971 6 C 0.103 3.897 7 C -0.127 4.127 8 C -0.119 4.119 9 N -0.684 5.684 10 C 0.083 3.917 11 C 0.196 3.804 12 H -0.046 1.046 13 C -0.522 4.522 14 H 0.055 0.945 15 C 0.016 3.984 16 N -0.917 5.917 17 Si 0.959 3.041 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.274 1.274 21 H 0.091 0.909 22 H 0.124 0.876 23 H 0.119 0.881 24 H 0.063 0.937 25 H 0.009 0.991 26 H 0.007 0.993 27 H 0.092 0.908 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.327 0.673 35 H 0.074 0.926 36 H 0.046 0.954 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.746 -11.118 1.212 11.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.180 4.180 3 C -0.034 4.034 4 N -0.252 5.252 5 C -0.101 4.101 6 C 0.011 3.989 7 C -0.185 4.185 8 C -0.177 4.177 9 N -0.313 5.313 10 C -0.047 4.047 11 C 0.087 3.913 12 H -0.029 1.029 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.184 4.184 16 N -0.556 5.556 17 Si 0.785 3.215 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.199 1.199 21 H 0.110 0.890 22 H 0.142 0.858 23 H 0.137 0.863 24 H 0.081 0.919 25 H 0.027 0.973 26 H 0.025 0.975 27 H 0.110 0.890 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.143 0.857 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.759 -10.876 2.338 11.742 hybrid contribution -0.038 1.220 -2.037 2.375 sum -3.797 -9.656 0.301 10.380 Atomic orbital electron populations 1.23965 0.95212 1.02652 0.99341 1.22980 0.96627 0.97212 1.01187 1.21036 0.95133 0.96214 0.91022 1.62295 1.19010 1.02568 1.41328 1.22948 0.96708 0.93396 0.96998 1.21173 0.91624 0.91723 0.94358 1.21735 0.99786 0.94769 1.02213 1.21626 0.98600 1.01714 0.95752 1.60987 1.19918 1.02485 1.47885 1.21892 0.95734 0.90768 0.96278 1.19706 0.90347 0.88588 0.92663 1.02878 1.21288 0.93124 0.91294 1.50407 0.92658 1.25687 0.95900 1.02113 0.94681 1.69979 1.08192 1.26540 1.50875 0.85596 0.78436 0.78788 0.78725 1.19638 1.20804 1.19915 0.89026 0.85831 0.86338 0.91894 0.97260 0.97461 0.89011 0.91489 0.90304 0.92956 0.94001 0.91250 0.92766 0.85683 0.90757 0.93516 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.51 14.32 67.78 0.97 -3.54 16 2 C -0.16 -4.95 8.57 25.64 0.22 -4.73 16 3 C 0.09 3.78 5.15 85.56 0.44 4.22 16 4 N -0.53 -22.82 3.98 -879.44 -3.50 -26.32 16 5 C 0.03 1.05 3.79 86.31 0.33 1.37 16 6 C 0.10 3.48 0.95 3.53 0.00 3.49 16 7 C -0.13 -3.26 8.73 71.98 0.63 -2.63 16 8 C -0.12 -3.97 8.12 71.98 0.58 -3.38 16 9 N -0.68 -27.79 6.35 -469.76 -2.98 -30.77 16 10 C 0.08 4.09 5.37 86.31 0.46 4.56 16 11 C 0.20 10.06 1.90 44.17 0.08 10.15 16 12 H -0.05 -2.70 8.14 -2.39 -0.02 -2.72 16 13 C -0.52 -29.02 8.02 25.60 0.21 -28.81 16 14 H 0.06 3.08 6.50 -2.91 -0.02 3.06 16 15 C 0.02 0.86 5.30 84.65 0.45 1.31 16 16 N -0.92 -52.66 11.34 21.45 0.24 -52.42 16 17 Si 0.96 43.95 29.54 68.60 2.03 45.97 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 21 H 0.09 2.45 7.84 -2.91 -0.02 2.43 16 22 H 0.12 2.42 8.06 -2.91 -0.02 2.40 16 23 H 0.12 3.21 6.53 -2.91 -0.02 3.19 16 24 H 0.06 2.74 6.33 -2.38 -0.02 2.73 16 25 H 0.01 0.41 8.08 -2.39 -0.02 0.39 16 26 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 27 H 0.09 2.82 5.96 -2.39 -0.01 2.81 16 28 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.04 1.66 5.95 -2.39 -0.01 1.65 16 32 H 0.07 1.93 8.14 -2.38 -0.02 1.92 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.33 13.22 8.79 -89.70 -0.79 12.43 16 35 H 0.07 4.12 6.12 -2.39 -0.01 4.11 16 36 H 0.05 2.39 6.35 -2.39 -0.02 2.38 16 37 H 0.26 14.44 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -60.00 284.58 0.41 -59.58 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 0.25 Total: 21.96 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: 4.38 Total: -18.01 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -6.24 Total: -109.51 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -60.00 0.41 -59.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219414358.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.652 kcal (2) G-P(sol) polarization free energy of solvation -59.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds