Wall clock time and date at job start Mon Mar 30 2020 03:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.50428 * 2 1 4 4 C 1.53054 * 109.48476 * 120.04945 * 2 1 3 5 5 N 1.46963 * 109.36042 * 178.36898 * 4 2 1 6 6 C 1.46903 * 110.99508 * 176.81254 * 5 4 2 7 7 C 1.52997 * 117.50419 * 7.42275 * 6 5 4 8 8 C 1.52999 * 117.49980 * 298.79461 * 6 5 4 9 9 C 1.46955 * 110.88175 * 300.67673 * 5 4 2 10 10 H 1.09005 * 109.51055 * 299.34806 * 9 5 4 11 11 C 1.50694 * 109.48887 * 179.28987 * 9 5 4 12 12 H 1.08000 * 120.00563 * 0.11119 * 11 9 5 13 13 C 1.37885 * 119.99902 * 180.11283 * 11 9 5 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.53057 * 109.36013 * 59.32129 * 9 5 4 20 20 N 1.46950 * 109.36618 * 301.59709 * 19 9 5 21 21 C 1.46901 * 110.99837 * 183.18564 * 20 19 9 22 22 H 1.09004 * 109.47158 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47218 * 300.06187 * 1 2 3 24 24 H 1.08998 * 109.47036 * 60.05377 * 1 2 3 25 25 H 1.08993 * 109.49097 * 298.33313 * 4 2 1 26 26 H 1.08998 * 109.48966 * 58.38138 * 4 2 1 27 27 H 1.09007 * 115.54394 * 153.12814 * 6 5 4 28 28 H 1.09002 * 117.49492 * 359.97438 * 7 6 5 29 29 H 1.08997 * 117.50216 * 145.02015 * 7 6 5 30 30 H 1.09000 * 117.49708 * 214.98135 * 8 6 5 31 31 H 1.08997 * 117.49734 * 0.02562 * 8 6 5 32 32 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.48668 * 61.57055 * 19 9 5 34 34 H 1.09005 * 109.48527 * 181.60682 * 19 9 5 35 35 H 1.09001 * 109.47236 * 63.96007 * 21 20 19 36 36 H 1.09001 * 109.47193 * 183.95652 * 21 20 19 37 37 H 1.08999 * 109.47765 * 303.95757 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0405 -0.7225 1.2490 5 7 3.5096 -0.7552 1.2266 6 6 4.0410 -1.3750 2.4479 7 6 3.0378 -2.0161 3.4088 8 6 3.7190 -0.6977 3.7815 9 6 3.9999 -1.4491 0.0276 10 1 3.6362 -2.4767 0.0274 11 6 5.5069 -1.4492 0.0277 12 1 6.0469 -0.9822 0.8381 13 6 6.1963 -2.0453 -1.0070 14 7 5.5387 -2.6143 -1.9936 15 14 8.0643 -2.0447 -1.0072 16 1 8.5594 -2.7443 -2.2200 17 1 8.5589 -0.6445 -1.0064 18 1 8.5597 -2.7454 0.2047 19 6 3.4893 -0.7266 -1.2213 20 7 2.0203 -0.6940 -1.1990 21 6 1.4889 -0.0741 -2.4202 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5148 0.8895 24 1 -0.3633 0.5130 -0.8904 25 1 1.7021 -0.1928 2.1394 26 1 1.6540 -1.7416 1.2631 27 1 5.0167 -1.8505 2.3474 28 1 1.9834 -1.9776 3.1351 29 1 3.3533 -2.9136 3.9408 30 1 4.4827 -0.7280 4.5586 31 1 3.1126 0.2075 3.7527 32 1 6.0238 -3.0334 -2.7217 33 1 3.8756 0.2926 -1.2353 34 1 3.8281 -1.2561 -2.1118 35 1 1.7533 -0.6857 -3.2828 36 1 0.4040 0.0011 -2.3470 37 1 1.9151 0.9223 -2.5370 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219414899.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:32 Heat of formation + Delta-G solvation = 45.401634 kcal Electronic energy + Delta-G solvation = -16563.737066 eV Core-core repulsion = 14149.166763 eV Total energy + Delta-G solvation = -2414.570304 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.03344 -36.56563 -33.71373 -32.11436 -31.08461 -27.38430 -26.69365 -24.24485 -23.22908 -21.82335 -20.93602 -19.74744 -18.48813 -16.48069 -15.76580 -14.94064 -14.63634 -14.29590 -13.87269 -13.77378 -13.26915 -12.92260 -12.60587 -11.90222 -11.69536 -11.62511 -11.23784 -11.13149 -10.97847 -10.91723 -10.71377 -10.46836 -10.27826 -10.12839 -9.92292 -9.82378 -9.33382 -8.93471 -8.47396 -7.47550 -7.05281 -6.05030 -4.09976 3.30810 3.35479 3.38366 4.35640 4.47092 4.73813 4.87232 5.26639 5.42490 5.47707 5.58570 5.64712 5.74634 5.85403 5.88804 6.00687 6.03879 6.11668 6.15717 6.24914 6.33737 6.41160 6.45438 6.59270 6.62176 6.76437 6.84929 6.96600 7.35961 7.55744 7.76036 7.93232 8.00471 8.12755 8.30935 8.58526 8.97704 9.55000 11.01573 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.022191 B = 0.011844 C = 0.008178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.494590 B = 2363.499654 C = 3423.131044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.082 3.918 3 H 0.038 0.962 4 C 0.064 3.936 5 N -0.508 5.508 6 C 0.056 3.944 7 C -0.232 4.232 8 C -0.188 4.188 9 C 0.225 3.775 10 H 0.011 0.989 11 C -0.509 4.509 12 H 0.065 0.935 13 C 0.062 3.938 14 N -0.889 5.889 15 Si 0.898 3.102 16 H -0.288 1.288 17 H -0.277 1.277 18 H -0.277 1.277 19 C 0.067 3.933 20 N -0.544 5.544 21 C 0.026 3.974 22 H 0.060 0.940 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.036 0.964 27 H 0.128 0.872 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.263 0.737 33 H 0.015 0.985 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.894 3.445 4.264 8.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 H 0.056 0.944 4 C -0.065 4.065 5 N -0.230 5.230 6 C -0.055 4.055 7 C -0.271 4.271 8 C -0.226 4.226 9 C 0.119 3.881 10 H 0.029 0.971 11 C -0.548 4.548 12 H 0.083 0.917 13 C -0.140 4.140 14 N -0.528 5.528 15 Si 0.725 3.275 16 H -0.213 1.213 17 H -0.202 1.202 18 H -0.203 1.203 19 C -0.060 4.060 20 N -0.269 5.269 21 C -0.123 4.123 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.054 0.946 27 H 0.146 0.854 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.034 0.966 34 H 0.127 0.873 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -6.848 3.348 4.038 8.626 hybrid contribution 0.961 0.060 -0.046 0.964 sum -5.887 3.408 3.993 7.887 Atomic orbital electron populations 1.21885 0.95367 1.02052 1.00916 1.21594 0.93880 0.95887 0.91357 0.94446 1.22150 0.89824 0.98539 0.95983 1.62061 1.05462 1.53018 1.02466 1.22680 0.98798 0.98129 0.85861 1.23476 0.99589 0.96470 1.07544 1.22986 1.03662 0.95812 1.00153 1.19257 0.94274 0.91334 0.83269 0.97083 1.21099 0.90230 1.36010 1.07491 0.91682 1.24955 0.98599 0.95027 0.95439 1.69872 1.35326 1.37009 1.10567 0.86567 0.85330 0.78216 0.77352 1.21317 1.20222 1.20260 1.22503 0.81741 0.98521 1.03221 1.62350 1.12074 1.51943 1.00548 1.22344 0.99298 0.96864 0.93778 0.92134 0.92871 0.92650 0.92090 0.94609 0.85407 0.89056 0.89728 0.89469 0.89535 0.92751 0.96645 0.87274 0.91838 0.92230 0.96692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.88 37.16 0.33 -1.78 16 2 C 0.08 1.52 2.56 -67.65 -0.17 1.35 16 3 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 4 C 0.06 1.23 3.53 -3.76 -0.01 1.21 16 5 N -0.51 -11.26 4.73 -219.94 -1.04 -12.30 16 6 C 0.06 1.12 5.64 -67.71 -0.38 0.74 16 7 C -0.23 -3.92 9.50 -26.73 -0.25 -4.18 16 8 C -0.19 -3.11 9.99 -26.73 -0.27 -3.38 16 9 C 0.22 5.73 1.95 -68.81 -0.13 5.60 16 10 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 11 C -0.51 -13.78 7.61 -34.44 -0.26 -14.04 16 12 H 0.07 1.76 6.92 -52.49 -0.36 1.39 16 13 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 14 N -0.89 -24.93 11.34 55.43 0.63 -24.30 16 15 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 C 0.07 1.65 4.65 -3.77 -0.02 1.63 16 20 N -0.54 -11.37 4.78 -234.73 -1.12 -12.49 16 21 C 0.03 0.45 9.36 60.06 0.56 1.02 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.74 6.19 -51.93 -0.32 0.42 16 25 H 0.06 1.06 6.69 -51.93 -0.35 0.71 16 26 H 0.04 0.72 7.20 -51.93 -0.37 0.35 16 27 H 0.13 2.80 6.50 -51.93 -0.34 2.46 16 28 H 0.09 1.51 5.89 -51.93 -0.31 1.21 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.09 1.40 7.58 -51.93 -0.39 1.00 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.11 2.94 6.12 -51.93 -0.32 2.63 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.06 0.89 5.83 -51.93 -0.30 0.59 16 37 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 LS Contribution 281.19 15.07 4.24 4.24 Total: -1.00 -27.76 281.19 -9.03 -36.79 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -6.00 Total: 2.30 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -0.70 Total: -10.24 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -1.53 Total: -49.10 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -27.76 -9.03 -36.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219414899.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.192 kcal (2) G-P(sol) polarization free energy of solvation -27.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds