Wall clock time and date at job start Mon Mar 30 2020 03:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.50428 * 2 1 4 4 C 1.53054 * 109.48476 * 120.04945 * 2 1 3 5 5 N 1.46963 * 109.36042 * 178.36898 * 4 2 1 6 6 C 1.46903 * 110.99508 * 176.81254 * 5 4 2 7 7 C 1.52997 * 117.50419 * 7.42275 * 6 5 4 8 8 C 1.52999 * 117.49980 * 298.79461 * 6 5 4 9 9 C 1.46955 * 110.88175 * 300.67673 * 5 4 2 10 10 H 1.09005 * 109.51055 * 299.34806 * 9 5 4 11 11 C 1.50694 * 109.48887 * 179.28987 * 9 5 4 12 12 H 1.08000 * 120.00563 * 0.11119 * 11 9 5 13 13 C 1.37885 * 119.99902 * 180.11283 * 11 9 5 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.53057 * 109.36013 * 59.32129 * 9 5 4 20 20 N 1.46950 * 109.36618 * 301.59709 * 19 9 5 21 21 C 1.46901 * 110.99837 * 183.18564 * 20 19 9 22 22 H 1.09004 * 109.47158 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47218 * 300.06187 * 1 2 3 24 24 H 1.08998 * 109.47036 * 60.05377 * 1 2 3 25 25 H 1.08993 * 109.49097 * 298.33313 * 4 2 1 26 26 H 1.08998 * 109.48966 * 58.38138 * 4 2 1 27 27 H 1.09007 * 115.54394 * 153.12814 * 6 5 4 28 28 H 1.09002 * 117.49492 * 359.97438 * 7 6 5 29 29 H 1.08997 * 117.50216 * 145.02015 * 7 6 5 30 30 H 1.09000 * 117.49708 * 214.98135 * 8 6 5 31 31 H 1.08997 * 117.49734 * 0.02562 * 8 6 5 32 32 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.48668 * 61.57055 * 19 9 5 34 34 H 1.09005 * 109.48527 * 181.60682 * 19 9 5 35 35 H 1.09001 * 109.47236 * 63.96007 * 21 20 19 36 36 H 1.09001 * 109.47193 * 183.95652 * 21 20 19 37 37 H 1.08999 * 109.47765 * 303.95757 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0405 -0.7225 1.2490 5 7 3.5096 -0.7552 1.2266 6 6 4.0410 -1.3750 2.4479 7 6 3.0378 -2.0161 3.4088 8 6 3.7190 -0.6977 3.7815 9 6 3.9999 -1.4491 0.0276 10 1 3.6362 -2.4767 0.0274 11 6 5.5069 -1.4492 0.0277 12 1 6.0469 -0.9822 0.8381 13 6 6.1963 -2.0453 -1.0070 14 7 5.5387 -2.6143 -1.9936 15 14 8.0643 -2.0447 -1.0072 16 1 8.5594 -2.7443 -2.2200 17 1 8.5589 -0.6445 -1.0064 18 1 8.5597 -2.7454 0.2047 19 6 3.4893 -0.7266 -1.2213 20 7 2.0203 -0.6940 -1.1990 21 6 1.4889 -0.0741 -2.4202 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5148 0.8895 24 1 -0.3633 0.5130 -0.8904 25 1 1.7021 -0.1928 2.1394 26 1 1.6540 -1.7416 1.2631 27 1 5.0167 -1.8505 2.3474 28 1 1.9834 -1.9776 3.1351 29 1 3.3533 -2.9136 3.9408 30 1 4.4827 -0.7280 4.5586 31 1 3.1126 0.2075 3.7527 32 1 6.0238 -3.0334 -2.7217 33 1 3.8756 0.2926 -1.2353 34 1 3.8281 -1.2561 -2.1118 35 1 1.7533 -0.6857 -3.2828 36 1 0.4040 0.0011 -2.3470 37 1 1.9151 0.9223 -2.5370 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219414899.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:32 Heat of formation + Delta-G solvation = 26.269863 kcal Electronic energy + Delta-G solvation = -16564.566682 eV Core-core repulsion = 14149.166763 eV Total energy + Delta-G solvation = -2415.399919 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.66538 -38.08223 -35.60824 -33.78297 -32.77966 -29.12016 -28.28168 -26.04596 -24.83273 -23.17867 -22.69571 -21.31357 -20.19268 -18.43490 -17.47753 -16.53500 -16.38837 -15.97080 -15.47243 -15.35561 -14.94689 -14.52175 -14.24739 -13.61131 -13.12325 -13.00444 -12.88186 -12.77280 -12.57250 -12.55281 -12.29806 -12.12636 -11.96247 -11.84390 -11.65577 -11.41104 -10.93923 -10.85167 -10.52710 -9.14332 -8.77000 -8.13421 -6.25964 1.41636 1.43249 1.51128 2.40382 2.96333 3.05643 3.27036 3.36685 4.01551 4.01863 4.15671 4.24647 4.29411 4.41515 4.49276 4.59452 4.63962 4.78251 4.79313 4.80944 4.92309 4.95918 4.98873 5.05942 5.09336 5.22911 5.30407 5.34323 5.48289 5.58466 5.69609 6.11002 6.27298 6.30971 6.50923 6.72668 6.89245 7.42972 8.92298 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.022191 B = 0.011844 C = 0.008178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.494590 B = 2363.499654 C = 3423.131044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.078 3.922 3 H 0.029 0.971 4 C 0.064 3.936 5 N -0.517 5.517 6 C 0.010 3.990 7 C -0.215 4.215 8 C -0.158 4.158 9 C 0.235 3.765 10 H -0.036 1.036 11 C -0.525 4.525 12 H 0.059 0.941 13 C 0.015 3.985 14 N -0.916 5.916 15 Si 0.961 3.039 16 H -0.283 1.283 17 H -0.272 1.272 18 H -0.271 1.271 19 C 0.084 3.916 20 N -0.558 5.558 21 C 0.027 3.973 22 H 0.058 0.942 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.025 0.975 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.263 0.737 33 H -0.005 1.005 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.949 4.391 5.606 10.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.031 4.031 3 H 0.047 0.953 4 C -0.064 4.064 5 N -0.239 5.239 6 C -0.100 4.100 7 C -0.254 4.254 8 C -0.196 4.196 9 C 0.127 3.873 10 H -0.018 1.018 11 C -0.563 4.563 12 H 0.077 0.923 13 C -0.184 4.184 14 N -0.555 5.555 15 Si 0.786 3.214 16 H -0.208 1.208 17 H -0.198 1.198 18 H -0.196 1.196 19 C -0.044 4.044 20 N -0.283 5.283 21 C -0.121 4.121 22 H 0.077 0.923 23 H 0.098 0.902 24 H 0.089 0.911 25 H 0.106 0.894 26 H 0.043 0.957 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.126 0.874 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.013 0.987 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.111 0.889 37 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -7.922 4.303 5.402 10.509 hybrid contribution 1.249 -0.247 -0.422 1.341 sum -6.673 4.055 4.980 9.261 Atomic orbital electron populations 1.21822 0.91676 1.02613 1.03035 1.21759 0.96689 0.94747 0.89856 0.95326 1.22265 0.88076 0.98386 0.97637 1.62071 1.07297 1.52563 1.01956 1.22624 0.98899 1.01659 0.86806 1.23512 0.99088 0.97478 1.05291 1.23055 1.03365 0.95825 0.97316 1.18942 0.93593 0.89221 0.85517 1.01800 1.21341 0.91470 1.36099 1.07410 0.92286 1.25731 1.03041 0.94621 0.95019 1.70013 1.36908 1.37562 1.11018 0.85568 0.79949 0.78316 0.77545 1.20804 1.19775 1.19575 1.22064 0.84481 0.96416 1.01467 1.62291 1.09550 1.53547 1.02895 1.22412 1.01155 0.96433 0.92128 0.92281 0.90216 0.91135 0.89383 0.95727 0.88242 0.88376 0.88440 0.87417 0.88498 0.92769 0.98652 0.90317 0.92491 0.88875 0.96527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.46 8.88 71.98 0.64 -2.82 16 2 C 0.08 2.80 2.56 44.92 0.12 2.92 16 3 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 4 C 0.06 2.41 3.53 86.31 0.30 2.72 16 5 N -0.52 -23.19 4.73 -849.74 -4.02 -27.21 16 6 C 0.01 0.40 5.64 44.91 0.25 0.65 16 7 C -0.21 -6.87 9.50 30.60 0.29 -6.58 16 8 C -0.16 -4.81 9.99 30.60 0.31 -4.51 16 9 C 0.23 12.49 1.95 44.18 0.09 12.57 16 10 H -0.04 -2.17 8.14 -2.38 -0.02 -2.19 16 11 C -0.52 -29.52 7.61 25.60 0.19 -29.32 16 12 H 0.06 3.31 6.92 -2.91 -0.02 3.29 16 13 C 0.02 0.85 5.30 84.66 0.45 1.30 16 14 N -0.92 -53.30 11.34 21.45 0.24 -53.06 16 15 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 C 0.08 4.30 4.65 86.31 0.40 4.70 16 20 N -0.56 -23.42 4.78 -896.54 -4.29 -27.71 16 21 C 0.03 0.91 9.36 127.69 1.20 2.11 16 22 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 24 H 0.07 1.62 6.19 -2.39 -0.01 1.60 16 25 H 0.09 2.80 6.69 -2.39 -0.02 2.78 16 26 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 27 H 0.10 4.52 6.50 -2.38 -0.02 4.51 16 28 H 0.10 3.01 5.89 -2.39 -0.01 3.00 16 29 H 0.10 2.85 8.14 -2.39 -0.02 2.84 16 30 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.10 2.78 7.58 -2.39 -0.02 2.77 16 32 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 33 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 34 H 0.08 4.48 6.12 -2.38 -0.01 4.46 16 35 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.09 2.55 5.83 -2.39 -0.01 2.54 16 37 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -62.53 281.19 -0.77 -63.30 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 1.03 Total: 14.90 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 4.24 Total: -16.26 kcal Atomic # 7 Polarization: -99.91 SS G_CDS: -8.06 Total: -107.97 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -62.53 -0.77 -63.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219414899.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.565 kcal (2) G-P(sol) polarization free energy of solvation -62.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds