Wall clock time and date at job start Mon Mar 30 2020 03:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00224 * 2 1 4 4 N 1.46906 * 109.46928 * 124.99888 * 3 2 1 5 5 C 1.48196 * 110.99916 * 298.23571 * 4 3 2 6 6 C 1.53932 * 112.77656 * 191.68411 * 5 4 3 7 7 H 1.08999 * 108.86575 * 79.07240 * 6 5 4 8 8 C 1.50697 * 108.86438 * 197.58927 * 6 5 4 9 9 H 1.07997 * 120.00423 * 359.97438 * 8 6 5 10 10 C 1.37881 * 119.99970 * 180.02562 * 8 6 5 11 11 N 1.31522 * 119.99720 * 359.97438 * 10 8 6 12 12 Si 1.86799 * 120.00173 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47005 * 59.99613 * 12 10 8 14 14 H 1.48502 * 109.47016 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47001 * 299.99561 * 12 10 8 16 16 N 1.44250 * 112.55354 * 318.38115 * 6 5 4 17 17 C 1.48113 * 109.97303 * 93.90193 * 16 6 5 18 18 C 1.46132 * 112.19330 * 279.71401 * 17 16 6 19 19 C 1.44254 * 110.99798 * 170.00291 * 4 3 2 20 20 H 1.08997 * 109.61259 * 99.92402 * 19 4 3 21 21 C 1.53006 * 109.60890 * 339.58539 * 19 4 3 22 22 H 1.08001 * 119.99795 * 179.97438 * 1 2 3 23 23 H 1.08004 * 119.99532 * 0.02562 * 1 2 3 24 24 H 1.08010 * 119.99939 * 179.97438 * 2 1 3 25 25 H 1.08996 * 109.47404 * 4.99603 * 3 2 1 26 26 H 1.08998 * 109.46947 * 244.99242 * 3 2 1 27 27 H 1.09000 * 108.82542 * 312.53754 * 5 4 3 28 28 H 1.09003 * 108.82086 * 70.83273 * 5 4 3 29 29 H 0.96998 * 119.99396 * 180.02562 * 11 10 8 30 30 H 1.00901 * 110.99943 * 330.68205 * 16 6 5 31 31 H 1.08993 * 108.93278 * 40.41449 * 17 16 6 32 32 H 1.08998 * 108.93560 * 159.01280 * 17 16 6 33 33 H 1.09006 * 108.99910 * 300.24041 * 18 17 16 34 34 H 1.09003 * 108.99597 * 181.49260 * 18 17 16 35 35 H 1.09001 * 109.47002 * 60.00086 * 21 19 4 36 36 H 1.08993 * 109.46955 * 180.02562 * 21 19 4 37 37 H 1.09000 * 109.47050 * 300.00352 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3319 1.1346 5 6 2.2686 1.2438 2.4226 6 6 3.1643 1.5539 3.6355 7 1 3.2775 2.6345 3.7229 8 6 2.4955 1.0323 4.8811 9 1 1.5387 0.5361 4.8129 10 6 3.1045 1.1896 6.1081 11 7 4.2695 1.7944 6.1912 12 14 2.2758 0.5424 7.6520 13 1 2.0835 -0.9251 7.5324 14 1 3.1293 0.8349 8.8315 15 1 0.9563 1.2027 7.8194 16 7 4.4728 0.9572 3.5239 17 6 5.4225 1.9275 2.9319 18 6 5.3028 1.9997 1.4773 19 6 3.8961 2.4552 1.0376 20 1 3.5494 3.2588 1.6873 21 6 3.9456 2.9500 -0.4094 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5399 0.9354 -0.0004 24 1 1.8500 -0.9354 0.0004 25 1 1.3587 2.1316 0.0895 26 1 2.6214 1.4024 -0.9313 27 1 1.4398 1.9515 2.4074 28 1 1.8662 0.2366 2.5309 29 1 4.6981 1.9047 7.0543 30 1 4.4378 0.1079 2.9803 31 1 5.2282 2.9141 3.3523 32 1 6.4389 1.6293 3.1888 33 1 5.5049 1.0152 1.0552 34 1 6.0399 2.7060 1.0952 35 1 2.9478 3.2572 -0.7226 36 1 4.6263 3.7983 -0.4802 37 1 4.2982 2.1467 -1.0562 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219415942.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:54 Heat of formation + Delta-G solvation = 21.037861 kcal Electronic energy + Delta-G solvation = -16438.216111 eV Core-core repulsion = 14022.589315 eV Total energy + Delta-G solvation = -2415.626796 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.61461 -37.02607 -35.30208 -33.86483 -33.14522 -29.67373 -28.68840 -26.89944 -25.37628 -23.42961 -22.04522 -20.76789 -20.07806 -18.55623 -17.29161 -16.49167 -16.34760 -15.88686 -15.70037 -15.41159 -14.79050 -14.17225 -14.12540 -13.86824 -13.61062 -13.09445 -12.90829 -12.75090 -12.61731 -12.54044 -12.44006 -12.05200 -11.93237 -11.59870 -11.56112 -11.33834 -10.89998 -10.44227 -10.17985 -9.07071 -8.52807 -7.87988 -6.10510 1.39950 1.44531 1.46389 1.52902 2.49627 3.03559 3.31328 3.87188 4.03246 4.08430 4.14483 4.25031 4.35035 4.41975 4.55825 4.60668 4.65828 4.76153 4.77446 4.93783 5.01117 5.03840 5.08145 5.19172 5.23388 5.27797 5.37495 5.54634 5.74214 5.80084 5.83837 6.14828 6.35377 6.47225 6.76065 7.10075 7.38554 7.61334 9.12394 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.027305 B = 0.009469 C = 0.007402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.193229 B = 2956.365354 C = 3781.611307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.152 4.152 3 C 0.080 3.920 4 N -0.547 5.547 5 C 0.063 3.937 6 C 0.229 3.771 7 H -0.016 1.016 8 C -0.548 4.548 9 H 0.045 0.955 10 C 0.037 3.963 11 N -0.880 5.880 12 Si 0.946 3.054 13 H -0.274 1.274 14 H -0.286 1.286 15 H -0.275 1.275 16 N -0.642 5.642 17 C 0.068 3.932 18 C -0.127 4.127 19 C 0.087 3.913 20 H 0.015 0.985 21 C -0.145 4.145 22 H 0.110 0.890 23 H 0.094 0.906 24 H 0.111 0.889 25 H 0.026 0.974 26 H 0.109 0.891 27 H 0.006 0.994 28 H 0.058 0.942 29 H 0.252 0.748 30 H 0.318 0.682 31 H 0.026 0.974 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.786 -0.059 -13.729 13.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.170 4.170 3 C -0.047 4.047 4 N -0.272 5.272 5 C -0.066 4.066 6 C 0.119 3.881 7 H 0.002 0.998 8 C -0.587 4.587 9 H 0.063 0.937 10 C -0.166 4.166 11 N -0.517 5.517 12 Si 0.772 3.228 13 H -0.200 1.200 14 H -0.212 1.212 15 H -0.200 1.200 16 N -0.270 5.270 17 C -0.061 4.061 18 C -0.166 4.166 19 C -0.022 4.022 20 H 0.033 0.967 21 C -0.202 4.202 22 H 0.128 0.872 23 H 0.112 0.888 24 H 0.129 0.871 25 H 0.045 0.955 26 H 0.127 0.873 27 H 0.024 0.976 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.135 0.865 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.159 -0.218 -12.954 13.008 hybrid contribution -1.187 0.531 0.481 1.386 sum -2.346 0.313 -12.473 12.696 Atomic orbital electron populations 1.23946 0.95753 1.02328 1.01082 1.22970 0.95961 0.98597 0.99468 1.21509 0.93826 0.94383 0.94944 1.60661 1.20844 1.43536 1.02191 1.22974 0.95249 0.99364 0.89042 1.18688 0.86421 0.92539 0.90466 0.99810 1.21336 1.04602 1.40151 0.92590 0.93691 1.25595 0.95005 0.94844 1.01180 1.70201 1.15797 1.41600 1.24075 0.85846 0.78375 0.78961 0.79594 1.19960 1.21194 1.20018 1.61016 1.08462 1.05374 1.52109 1.20730 0.96831 0.95736 0.92837 1.21278 0.96087 1.02311 0.96969 1.21354 0.93091 0.90340 0.97443 0.96731 1.22114 1.02441 1.01782 0.93878 0.87184 0.88794 0.87068 0.95547 0.87347 0.97609 0.92315 0.93907 0.86488 0.95487 0.93098 0.91217 0.90384 0.91937 0.91060 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.67 14.32 67.78 0.97 -3.70 16 2 C -0.15 -4.04 8.60 25.65 0.22 -3.82 16 3 C 0.08 2.21 4.18 85.56 0.36 2.57 16 4 N -0.55 -18.82 4.03 -874.00 -3.52 -22.34 16 5 C 0.06 2.69 4.34 86.37 0.37 3.07 16 6 C 0.23 11.78 1.84 44.98 0.08 11.86 16 7 H -0.02 -0.93 6.54 -2.39 -0.02 -0.95 16 8 C -0.55 -31.24 8.65 25.60 0.22 -31.02 16 9 H 0.04 2.53 7.69 -2.91 -0.02 2.51 16 10 C 0.04 2.11 5.37 84.65 0.45 2.57 16 11 N -0.88 -52.71 12.61 21.45 0.27 -52.44 16 12 Si 0.95 45.07 29.54 68.60 2.03 47.10 16 13 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 14 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 15 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 16 N -0.64 -31.45 5.50 -508.01 -2.79 -34.24 16 17 C 0.07 2.90 5.95 83.96 0.50 3.40 16 18 C -0.13 -4.17 4.90 28.91 0.14 -4.02 16 19 C 0.09 2.83 2.54 45.84 0.12 2.94 16 20 H 0.01 0.57 6.98 -2.39 -0.02 0.56 16 21 C -0.14 -3.35 7.72 71.98 0.56 -2.80 16 22 H 0.11 2.31 8.06 -2.91 -0.02 2.28 16 23 H 0.09 2.20 7.84 -2.91 -0.02 2.18 16 24 H 0.11 2.95 8.06 -2.91 -0.02 2.93 16 25 H 0.03 0.75 7.47 -2.39 -0.02 0.74 16 26 H 0.11 2.50 5.57 -2.39 -0.01 2.48 16 27 H 0.01 0.25 7.99 -2.39 -0.02 0.23 16 28 H 0.06 2.60 7.32 -2.39 -0.02 2.58 16 29 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 30 H 0.32 14.87 8.18 -89.69 -0.73 14.13 16 31 H 0.03 1.28 7.37 -2.39 -0.02 1.26 16 32 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.07 2.22 8.12 -2.38 -0.02 2.21 16 34 H 0.08 2.17 8.00 -2.39 -0.02 2.15 16 35 H 0.06 1.35 6.58 -2.39 -0.02 1.34 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 1.58 7.35 -2.39 -0.02 1.56 16 Total: -1.00 -62.53 285.11 0.27 -62.25 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.30 Total: 18.63 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 4.00 Total: -18.96 kcal Atomic # 7 Polarization: -102.98 SS G_CDS: -6.05 Total: -109.03 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -62.53 0.27 -62.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219415942.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.293 kcal (2) G-P(sol) polarization free energy of solvation -62.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds