Wall clock time and date at job start Mon Mar 30 2020 03:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 119.99877 * 2 1 4 4 N 1.46905 * 109.46873 * 125.00775 * 3 2 1 5 5 C 1.47743 * 111.00051 * 62.39543 * 4 3 2 6 6 C 1.50780 * 111.91190 * 84.94363 * 5 4 3 7 7 H 1.09002 * 109.73876 * 334.95890 * 6 5 4 8 8 C 1.50706 * 109.73571 * 214.25872 * 6 5 4 9 9 H 1.08002 * 120.00135 * 1.36078 * 8 6 5 10 10 C 1.37878 * 119.99910 * 181.35522 * 8 6 5 11 11 N 1.31509 * 120.00177 * 179.97438 * 10 8 6 12 12 Si 1.86801 * 119.99849 * 0.02562 * 10 8 6 13 13 H 1.48502 * 109.47214 * 89.99721 * 12 10 8 14 14 H 1.48507 * 109.47078 * 209.99342 * 12 10 8 15 15 H 1.48496 * 109.47494 * 329.99285 * 12 10 8 16 16 N 1.47684 * 108.09717 * 94.61086 * 6 5 4 17 17 C 1.40085 * 114.57017 * 278.68717 * 16 6 5 18 18 C 1.54508 * 111.51044 * 61.45007 * 17 16 6 19 19 C 1.48063 * 111.00052 * 189.99920 * 4 3 2 20 20 H 1.09008 * 108.79110 * 313.10881 * 19 4 3 21 21 C 1.53007 * 108.79169 * 71.32316 * 19 4 3 22 22 H 1.07996 * 119.99829 * 179.97438 * 1 2 3 23 23 H 1.08001 * 119.99760 * 359.97438 * 1 2 3 24 24 H 1.08001 * 119.99760 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47617 * 5.00721 * 3 2 1 26 26 H 1.08999 * 109.47122 * 245.00117 * 3 2 1 27 27 H 1.08995 * 108.99453 * 205.56760 * 5 4 3 28 28 H 1.09002 * 108.99459 * 324.31991 * 5 4 3 29 29 H 0.96996 * 120.00291 * 180.02562 * 11 10 8 30 30 H 1.00903 * 111.00187 * 151.98448 * 16 6 5 31 31 H 1.08996 * 109.06981 * 181.97269 * 17 16 6 32 32 H 1.08997 * 109.06839 * 300.92697 * 17 16 6 33 33 H 1.09006 * 109.56079 * 43.82630 * 18 17 16 34 34 H 1.09002 * 109.56237 * 164.04285 * 18 17 16 35 35 H 1.08997 * 109.47012 * 183.41059 * 21 19 4 36 36 H 1.08997 * 109.47136 * 303.41093 * 21 19 4 37 37 H 1.08999 * 109.46658 * 63.41066 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9965 1.3319 1.1345 5 6 4.0043 0.2580 1.0166 6 6 5.1721 0.6741 0.1585 7 1 4.8595 1.4543 -0.5356 8 6 5.6881 -0.5151 -0.6102 9 1 5.2045 -1.4754 -0.5079 10 6 6.7775 -0.3772 -1.4440 11 7 7.2281 -1.4150 -2.1143 12 14 7.6143 1.2836 -1.6203 13 1 8.6899 1.4063 -0.6038 14 1 8.2019 1.4000 -2.9792 15 1 6.6165 2.3646 -1.4182 16 7 6.2324 1.1921 1.0465 17 6 6.0546 2.5210 1.4523 18 6 4.7495 2.6968 2.2606 19 6 3.5795 2.6815 1.3103 20 1 3.9109 3.0500 0.3394 21 6 2.4967 3.6201 1.8466 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3587 2.1317 0.0897 26 1 2.6213 1.4026 -0.9314 27 1 4.3685 0.0026 2.0116 28 1 3.5355 -0.6216 0.5754 29 1 7.9947 -1.3181 -2.7006 30 1 7.1447 1.0581 0.6368 31 1 6.9001 2.8205 2.0715 32 1 6.0162 3.1605 0.5705 33 1 4.6499 1.8796 2.9751 34 1 4.7759 3.6469 2.7942 35 1 2.8973 4.6309 1.9230 36 1 1.6444 3.6175 1.1671 37 1 2.1769 3.2805 2.8318 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219416168.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:59 Heat of formation + Delta-G solvation = 37.613773 kcal Electronic energy + Delta-G solvation = -16582.710059 eV Core-core repulsion = 14167.802049 eV Total energy + Delta-G solvation = -2414.908011 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.20612 -35.59609 -33.95057 -32.53460 -31.68554 -28.48681 -27.56862 -25.16244 -23.81925 -22.23860 -20.50526 -19.44295 -18.20199 -17.05234 -16.36744 -15.45179 -14.98725 -14.58481 -13.91094 -13.80949 -13.72111 -12.96296 -12.85552 -12.62105 -12.21469 -11.85313 -11.57625 -11.36238 -11.17750 -10.98993 -10.84256 -10.47409 -10.42690 -10.05913 -9.86511 -9.80508 -9.31886 -9.10867 -8.76633 -7.76101 -7.24210 -6.22351 -4.23738 2.58613 3.09072 3.20047 3.23110 4.21521 4.44373 4.90107 5.15583 5.19660 5.34058 5.39752 5.51538 5.62490 5.78774 5.81283 5.93685 5.95512 6.06226 6.11330 6.18614 6.24790 6.30684 6.34238 6.45902 6.54440 6.71054 6.77661 6.94164 7.07428 7.22474 7.33196 7.66383 7.78591 8.22736 8.34752 8.58860 8.84126 9.37288 10.89696 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.025061 B = 0.011419 C = 0.008705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.012700 B = 2451.551244 C = 3215.943999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.125 4.125 3 C 0.079 3.921 4 N -0.542 5.542 5 C 0.072 3.928 6 C 0.166 3.834 7 H 0.002 0.998 8 C -0.507 4.507 9 H 0.082 0.918 10 C 0.074 3.926 11 N -0.889 5.889 12 Si 0.869 3.131 13 H -0.274 1.274 14 H -0.289 1.289 15 H -0.268 1.268 16 N -0.702 5.702 17 C 0.069 3.931 18 C -0.112 4.112 19 C 0.085 3.915 20 H 0.034 0.966 21 C -0.140 4.140 22 H 0.094 0.906 23 H 0.090 0.910 24 H 0.113 0.887 25 H 0.070 0.930 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.266 0.734 30 H 0.333 0.667 31 H 0.056 0.944 32 H 0.002 0.998 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.979 8.293 5.685 12.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.143 4.143 3 C -0.049 4.049 4 N -0.266 5.266 5 C -0.055 4.055 6 C 0.059 3.941 7 H 0.019 0.981 8 C -0.546 4.546 9 H 0.100 0.900 10 C -0.130 4.130 11 N -0.527 5.527 12 Si 0.698 3.302 13 H -0.200 1.200 14 H -0.216 1.216 15 H -0.194 1.194 16 N -0.340 5.340 17 C -0.063 4.063 18 C -0.150 4.150 19 C -0.023 4.023 20 H 0.052 0.948 21 C -0.198 4.198 22 H 0.112 0.888 23 H 0.108 0.892 24 H 0.131 0.869 25 H 0.088 0.912 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.158 0.842 31 H 0.074 0.926 32 H 0.020 0.980 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.391 7.933 6.492 13.247 hybrid contribution 1.405 1.454 -1.776 2.691 sum -6.987 9.387 4.716 12.616 Atomic orbital electron populations 1.23652 0.95747 1.01148 1.03802 1.23000 0.95667 0.98732 0.96908 1.21187 0.95082 0.95410 0.93200 1.62266 1.19691 1.03936 1.40757 1.22072 0.90433 0.92384 1.00579 1.19761 0.89699 0.95152 0.89519 0.98075 1.21121 1.14379 0.95997 1.23121 0.90033 1.25044 0.96699 0.96094 0.95131 1.69867 1.25133 1.29484 1.28206 0.87108 0.80267 0.85352 0.77505 1.20024 1.21609 1.19365 1.58277 1.07045 1.19446 1.49279 1.20921 0.97322 0.91086 0.96932 1.21584 0.93195 1.01959 0.98253 1.21298 0.94104 0.89145 0.97768 0.94807 1.21916 0.98538 0.97793 1.01573 0.88811 0.89174 0.86867 0.91217 0.93800 0.90685 0.90818 0.92394 0.84204 0.92584 0.98045 0.89975 0.91576 0.92972 0.93133 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.73 14.32 29.01 0.42 -2.31 16 2 C -0.12 -1.96 9.10 -36.03 -0.33 -2.28 16 3 C 0.08 1.32 5.20 -4.97 -0.03 1.29 16 4 N -0.54 -9.70 4.44 -229.15 -1.02 -10.72 16 5 C 0.07 1.50 4.65 -4.47 -0.02 1.48 16 6 C 0.17 3.90 1.46 -69.54 -0.10 3.80 16 7 H 0.00 0.05 5.39 -51.93 -0.28 -0.23 16 8 C -0.51 -13.96 9.19 -34.44 -0.32 -14.28 16 9 H 0.08 2.41 7.70 -52.49 -0.40 2.01 16 10 C 0.07 2.08 5.40 -17.82 -0.10 1.99 16 11 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 12 Si 0.87 21.26 24.64 -169.99 -4.19 17.07 16 13 H -0.27 -6.44 6.92 56.52 0.39 -6.05 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 15 H -0.27 -6.51 5.90 56.52 0.33 -6.17 16 16 N -0.70 -15.68 5.51 -112.41 -0.62 -16.30 16 17 C 0.07 1.31 5.83 -6.55 -0.04 1.27 16 18 C -0.11 -1.84 5.18 -27.07 -0.14 -1.98 16 19 C 0.08 1.42 1.81 -68.20 -0.12 1.30 16 20 H 0.03 0.64 6.41 -51.92 -0.33 0.30 16 21 C -0.14 -1.88 9.01 37.16 0.33 -1.55 16 22 H 0.09 1.11 8.06 -52.49 -0.42 0.69 16 23 H 0.09 1.08 7.84 -52.49 -0.41 0.67 16 24 H 0.11 1.89 6.56 -52.49 -0.34 1.54 16 25 H 0.07 1.03 5.94 -51.93 -0.31 0.72 16 26 H 0.04 0.82 7.66 -51.93 -0.40 0.43 16 27 H 0.07 1.59 7.20 -51.93 -0.37 1.22 16 28 H 0.07 1.56 5.18 -51.93 -0.27 1.29 16 29 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.33 7.90 4.52 -39.29 -0.18 7.72 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.00 0.04 6.93 -51.93 -0.36 -0.32 16 33 H 0.08 1.42 7.19 -51.93 -0.37 1.05 16 34 H 0.07 0.91 7.69 -51.93 -0.40 0.51 16 35 H 0.05 0.61 8.08 -51.93 -0.42 0.20 16 36 H 0.05 0.65 6.42 -51.93 -0.33 0.32 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 272.97 15.07 4.11 4.11 Total: -1.00 -28.64 272.97 -7.04 -35.69 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.67 Total: 7.20 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -0.44 Total: -11.28 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.86 Total: -52.80 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.19 Total: 17.07 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.64 -7.04 -35.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219416168.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.299 kcal (2) G-P(sol) polarization free energy of solvation -28.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds