Wall clock time and date at job start Mon Mar 30 2020 03:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 119.99877 * 2 1 4 4 N 1.46905 * 109.46873 * 125.00775 * 3 2 1 5 5 C 1.47743 * 111.00051 * 62.39543 * 4 3 2 6 6 C 1.50780 * 111.91190 * 84.94363 * 5 4 3 7 7 H 1.09002 * 109.73876 * 334.95890 * 6 5 4 8 8 C 1.50706 * 109.73571 * 214.25872 * 6 5 4 9 9 H 1.08002 * 120.00135 * 1.36078 * 8 6 5 10 10 C 1.37878 * 119.99910 * 181.35522 * 8 6 5 11 11 N 1.31509 * 120.00177 * 179.97438 * 10 8 6 12 12 Si 1.86801 * 119.99849 * 0.02562 * 10 8 6 13 13 H 1.48502 * 109.47214 * 89.99721 * 12 10 8 14 14 H 1.48507 * 109.47078 * 209.99342 * 12 10 8 15 15 H 1.48496 * 109.47494 * 329.99285 * 12 10 8 16 16 N 1.47684 * 108.09717 * 94.61086 * 6 5 4 17 17 C 1.40085 * 114.57017 * 278.68717 * 16 6 5 18 18 C 1.54508 * 111.51044 * 61.45007 * 17 16 6 19 19 C 1.48063 * 111.00052 * 189.99920 * 4 3 2 20 20 H 1.09008 * 108.79110 * 313.10881 * 19 4 3 21 21 C 1.53007 * 108.79169 * 71.32316 * 19 4 3 22 22 H 1.07996 * 119.99829 * 179.97438 * 1 2 3 23 23 H 1.08001 * 119.99760 * 359.97438 * 1 2 3 24 24 H 1.08001 * 119.99760 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47617 * 5.00721 * 3 2 1 26 26 H 1.08999 * 109.47122 * 245.00117 * 3 2 1 27 27 H 1.08995 * 108.99453 * 205.56760 * 5 4 3 28 28 H 1.09002 * 108.99459 * 324.31991 * 5 4 3 29 29 H 0.96996 * 120.00291 * 180.02562 * 11 10 8 30 30 H 1.00903 * 111.00187 * 151.98448 * 16 6 5 31 31 H 1.08996 * 109.06981 * 181.97269 * 17 16 6 32 32 H 1.08997 * 109.06839 * 300.92697 * 17 16 6 33 33 H 1.09006 * 109.56079 * 43.82630 * 18 17 16 34 34 H 1.09002 * 109.56237 * 164.04285 * 18 17 16 35 35 H 1.08997 * 109.47012 * 183.41059 * 21 19 4 36 36 H 1.08997 * 109.47136 * 303.41093 * 21 19 4 37 37 H 1.08999 * 109.46658 * 63.41066 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9965 1.3319 1.1345 5 6 4.0043 0.2580 1.0166 6 6 5.1721 0.6741 0.1585 7 1 4.8595 1.4543 -0.5356 8 6 5.6881 -0.5151 -0.6102 9 1 5.2045 -1.4754 -0.5079 10 6 6.7775 -0.3772 -1.4440 11 7 7.2281 -1.4150 -2.1143 12 14 7.6143 1.2836 -1.6203 13 1 8.6899 1.4063 -0.6038 14 1 8.2019 1.4000 -2.9792 15 1 6.6165 2.3646 -1.4182 16 7 6.2324 1.1921 1.0465 17 6 6.0546 2.5210 1.4523 18 6 4.7495 2.6968 2.2606 19 6 3.5795 2.6815 1.3103 20 1 3.9109 3.0500 0.3394 21 6 2.4967 3.6201 1.8466 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3587 2.1317 0.0897 26 1 2.6213 1.4026 -0.9314 27 1 4.3685 0.0026 2.0116 28 1 3.5355 -0.6216 0.5754 29 1 7.9947 -1.3181 -2.7006 30 1 7.1447 1.0581 0.6368 31 1 6.9001 2.8205 2.0715 32 1 6.0162 3.1605 0.5705 33 1 4.6499 1.8796 2.9751 34 1 4.7759 3.6469 2.7942 35 1 2.8973 4.6309 1.9230 36 1 1.6444 3.6175 1.1671 37 1 2.1769 3.2805 2.8318 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219416168.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:58 Heat of formation + Delta-G solvation = 16.498621 kcal Electronic energy + Delta-G solvation = -16583.625681 eV Core-core repulsion = 14167.802049 eV Total energy + Delta-G solvation = -2415.823632 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.74197 -37.12027 -35.51220 -34.27099 -33.32205 -30.06559 -29.00442 -26.89673 -25.25993 -23.85282 -22.08698 -20.69965 -19.72765 -19.13782 -18.00478 -17.02889 -16.40465 -16.15886 -15.70930 -15.41232 -15.06386 -14.90493 -14.38436 -13.85229 -13.72361 -13.15094 -12.99602 -12.84662 -12.82114 -12.53379 -12.35355 -12.11824 -11.96142 -11.69851 -11.51489 -11.43420 -11.13222 -10.91861 -10.31419 -9.39401 -8.90457 -8.41751 -6.48738 1.12481 1.19370 1.26812 1.42166 2.13694 2.84163 3.06285 3.56216 3.87880 3.92671 4.01800 4.25027 4.31035 4.47614 4.53070 4.57010 4.59149 4.64695 4.75801 4.80377 4.83035 4.98678 5.05201 5.10079 5.13663 5.29426 5.34461 5.40285 5.48743 5.78429 5.90414 6.03263 6.24318 6.28991 6.48414 6.53560 6.84817 7.15988 8.73066 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.025061 B = 0.011419 C = 0.008705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.012700 B = 2451.551244 C = 3215.943999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.162 4.162 3 C 0.083 3.917 4 N -0.535 5.535 5 C 0.084 3.916 6 C 0.178 3.822 7 H -0.015 1.015 8 C -0.516 4.516 9 H 0.044 0.956 10 C 0.022 3.978 11 N -0.934 5.934 12 Si 0.932 3.068 13 H -0.253 1.253 14 H -0.288 1.288 15 H -0.266 1.266 16 N -0.704 5.704 17 C 0.059 3.941 18 C -0.105 4.105 19 C 0.077 3.923 20 H 0.011 0.989 21 C -0.131 4.131 22 H 0.110 0.890 23 H 0.112 0.888 24 H 0.091 0.909 25 H 0.096 0.904 26 H 0.014 0.986 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.269 0.731 30 H 0.323 0.677 31 H 0.081 0.919 32 H -0.007 1.007 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.081 10.895 7.100 15.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.181 4.181 3 C -0.044 4.044 4 N -0.260 5.260 5 C -0.044 4.044 6 C 0.070 3.930 7 H 0.003 0.997 8 C -0.556 4.556 9 H 0.062 0.938 10 C -0.177 4.177 11 N -0.573 5.573 12 Si 0.758 3.242 13 H -0.178 1.178 14 H -0.215 1.215 15 H -0.191 1.191 16 N -0.342 5.342 17 C -0.072 4.072 18 C -0.143 4.143 19 C -0.031 4.031 20 H 0.029 0.971 21 C -0.188 4.188 22 H 0.128 0.872 23 H 0.130 0.870 24 H 0.109 0.891 25 H 0.114 0.886 26 H 0.032 0.968 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.147 0.853 31 H 0.099 0.901 32 H 0.011 0.989 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.510 10.547 7.932 16.266 hybrid contribution 1.643 0.590 -2.217 2.821 sum -7.867 11.136 5.715 14.784 Atomic orbital electron populations 1.23921 0.94643 1.02945 0.99349 1.22847 0.96679 0.97497 1.01039 1.21215 0.94950 0.96950 0.91323 1.62349 1.18554 1.04018 1.41067 1.21797 0.90111 0.93239 0.99270 1.19532 0.90834 0.92991 0.89595 0.99715 1.21347 1.14209 0.96052 1.23954 0.93762 1.25810 0.97414 0.99786 0.94736 1.70005 1.26081 1.31850 1.29381 0.86072 0.79587 0.80611 0.77890 1.17844 1.21467 1.19087 1.58222 1.05893 1.21777 1.48283 1.21166 1.00001 0.88730 0.97296 1.21601 0.91425 1.03630 0.97618 1.21498 0.95766 0.88792 0.97029 0.97106 1.21845 0.97425 0.97828 1.01728 0.87160 0.87032 0.89071 0.88629 0.96833 0.91206 0.92249 0.92155 0.85348 0.90051 0.98942 0.90736 0.87851 0.90766 0.92592 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 14.32 67.78 0.97 -3.15 16 2 C -0.16 -5.05 9.10 25.64 0.23 -4.82 16 3 C 0.08 2.73 5.20 85.56 0.45 3.18 16 4 N -0.54 -18.80 4.44 -878.90 -3.90 -22.71 16 5 C 0.08 3.56 4.65 85.42 0.40 3.95 16 6 C 0.18 8.57 1.46 43.30 0.06 8.64 16 7 H -0.01 -0.74 5.39 -2.39 -0.01 -0.75 16 8 C -0.52 -29.75 9.19 25.60 0.24 -29.52 16 9 H 0.04 2.80 7.70 -2.91 -0.02 2.78 16 10 C 0.02 1.28 5.40 84.66 0.46 1.74 16 11 N -0.93 -57.70 13.96 21.45 0.30 -57.40 16 12 Si 0.93 44.50 24.64 68.60 1.69 46.19 16 13 H -0.25 -11.20 6.92 99.48 0.69 -10.52 16 14 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 15 H -0.27 -12.47 5.90 99.48 0.59 -11.88 16 16 N -0.70 -31.05 5.51 -509.56 -2.81 -33.86 16 17 C 0.06 2.11 5.83 88.05 0.51 2.63 16 18 C -0.10 -3.14 5.18 30.37 0.16 -2.99 16 19 C 0.08 2.41 1.81 43.96 0.08 2.49 16 20 H 0.01 0.40 6.41 -2.38 -0.02 0.38 16 21 C -0.13 -3.00 9.01 71.98 0.65 -2.35 16 22 H 0.11 2.30 8.06 -2.91 -0.02 2.28 16 23 H 0.11 2.24 7.84 -2.91 -0.02 2.21 16 24 H 0.09 3.21 6.56 -2.91 -0.02 3.19 16 25 H 0.10 2.61 5.94 -2.39 -0.01 2.60 16 26 H 0.01 0.52 7.66 -2.39 -0.02 0.51 16 27 H 0.07 3.00 7.20 -2.39 -0.02 2.99 16 28 H 0.06 2.66 5.18 -2.39 -0.01 2.65 16 29 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 30 H 0.32 15.06 4.52 -89.69 -0.41 14.66 16 31 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 32 H -0.01 -0.28 6.93 -2.39 -0.02 -0.30 16 33 H 0.07 2.39 7.19 -2.38 -0.02 2.38 16 34 H 0.10 2.35 7.69 -2.39 -0.02 2.33 16 35 H 0.07 1.40 8.08 -2.39 -0.02 1.38 16 36 H 0.06 1.22 6.42 -2.39 -0.02 1.21 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -64.02 272.97 -0.02 -64.04 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.50 Total: 23.92 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: 4.20 Total: -20.19 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -6.41 Total: -113.97 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.69 Total: 46.19 kcal Total: -64.02 -0.02 -64.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219416168.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.539 kcal (2) G-P(sol) polarization free energy of solvation -64.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds