Wall clock time and date at job start Mon Mar 30 2020 03:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.06131 * 2 1 4 4 C 1.54512 * 109.07145 * 241.03303 * 2 1 3 5 5 C 1.50743 * 108.93970 * 163.45756 * 4 2 1 6 6 N 1.48071 * 112.93396 * 92.65400 * 5 4 2 7 7 C 1.46904 * 110.99633 * 84.35178 * 6 5 4 8 8 C 1.52999 * 117.49585 * 124.67187 * 7 6 5 9 9 C 1.53003 * 117.49783 * 56.05001 * 7 6 5 10 10 C 1.47746 * 113.78686 * 318.29165 * 6 5 4 11 11 C 1.50779 * 111.91875 * 318.86828 * 10 6 5 12 12 H 1.09000 * 109.77081 * 334.93722 * 11 10 6 13 13 C 1.50697 * 109.73531 * 214.26473 * 11 10 6 14 14 H 1.07991 * 120.00449 * 1.07558 * 13 11 10 15 15 C 1.37885 * 119.99686 * 181.35390 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 11 18 18 H 1.48498 * 109.47416 * 59.99812 * 17 15 13 19 19 H 1.48508 * 109.46609 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46903 * 299.99397 * 17 15 13 21 21 N 1.40087 * 109.06832 * 119.02299 * 2 1 3 22 22 H 1.08998 * 109.47322 * 300.97774 * 1 2 3 23 23 H 1.09004 * 109.47255 * 60.97692 * 1 2 3 24 24 H 1.09005 * 109.47464 * 180.97527 * 1 2 3 25 25 H 1.09000 * 109.55839 * 283.29589 * 4 2 1 26 26 H 1.09005 * 109.55622 * 43.51285 * 4 2 1 27 27 H 1.08995 * 108.79190 * 213.54604 * 5 4 2 28 28 H 1.08996 * 108.79062 * 331.76806 * 5 4 2 29 29 H 1.09002 * 115.55152 * 270.37532 * 7 6 5 30 30 H 1.08999 * 117.49896 * 359.97438 * 8 7 6 31 31 H 1.08993 * 117.50134 * 145.02378 * 8 7 6 32 32 H 1.08996 * 117.49775 * 214.97838 * 9 7 6 33 33 H 1.08996 * 117.49635 * 359.97438 * 9 7 6 34 34 H 1.09002 * 108.98819 * 198.24073 * 10 6 5 35 35 H 1.08999 * 108.99547 * 79.50106 * 10 6 5 36 36 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 37 37 H 1.00909 * 110.99367 * 55.27799 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8859 1.0302 0.0000 4 6 2.0348 -0.7072 -1.2776 5 6 3.4865 -0.3597 -1.4881 6 7 4.4096 -1.3433 -0.8775 7 6 4.6357 -2.4822 -1.7775 8 6 6.0831 -2.8169 -2.1433 9 6 5.1593 -2.1790 -3.1828 10 6 3.9898 -1.8027 0.4625 11 6 3.4569 -0.6708 1.3041 12 1 3.8793 0.2739 0.9616 13 6 3.8202 -0.8964 2.7491 14 1 4.3973 -1.7643 3.0318 15 6 3.4108 0.0025 3.7113 16 7 2.7081 1.0595 3.3671 17 14 3.8546 -0.2812 5.5035 18 1 5.3321 -0.3139 5.6485 19 1 3.2996 0.8200 6.3310 20 1 3.2840 -1.5755 5.9558 21 7 1.9876 -0.6424 1.1577 22 1 -0.3634 0.5289 0.8811 23 1 -0.3634 0.4986 -0.8986 24 1 -0.3634 -1.0275 0.0175 25 1 1.9308 -1.7862 -1.1628 26 1 1.4500 -0.3734 -2.1348 27 1 3.6840 -0.3104 -2.5588 28 1 3.6796 0.6205 -1.0522 29 1 3.9387 -3.3132 -1.6685 30 1 6.8675 -2.1919 -1.7166 31 1 6.3387 -3.8683 -2.2750 32 1 4.8070 -2.8106 -3.9983 33 1 5.3355 -1.1345 -3.4396 34 1 4.8458 -2.2488 0.9688 35 1 3.2122 -2.5584 0.3510 36 1 2.4204 1.6920 4.0440 37 1 1.5986 -1.5703 1.2341 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219418196.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:34 Heat of formation + Delta-G solvation = 39.138066 kcal Electronic energy + Delta-G solvation = -16414.800124 eV Core-core repulsion = 13999.958212 eV Total energy + Delta-G solvation = -2414.841912 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.11405 -36.69230 -33.26479 -32.93059 -30.91526 -27.91082 -26.41531 -24.45719 -22.97611 -21.95873 -20.68254 -19.93886 -18.71501 -16.76568 -15.83533 -15.00821 -14.51259 -14.31449 -14.23309 -13.86067 -13.37007 -12.57674 -12.36308 -11.99517 -11.76476 -11.49380 -11.31382 -11.24382 -10.93006 -10.82455 -10.63700 -10.59356 -10.25789 -10.19858 -9.95183 -9.75685 -9.37275 -8.98963 -8.31870 -7.62414 -6.68517 -5.81401 -3.93666 3.39702 3.44131 3.46689 4.01799 4.27785 4.56200 5.15153 5.18285 5.26510 5.36904 5.47570 5.62112 5.75174 5.78291 5.85094 5.88500 6.04652 6.14261 6.18114 6.20412 6.29233 6.37922 6.41809 6.43801 6.57219 6.67068 6.84439 6.98731 7.05346 7.40079 7.72102 7.85053 7.99633 8.37550 8.74658 9.09521 9.22404 9.73955 11.23810 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.027082 B = 0.009406 C = 0.007384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.629872 B = 2976.095459 C = 3790.854455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.113 3.887 3 H 0.068 0.932 4 C -0.189 4.189 5 C 0.064 3.936 6 N -0.519 5.519 7 C 0.015 3.985 8 C -0.167 4.167 9 C -0.180 4.180 10 C 0.046 3.954 11 C 0.233 3.767 12 H 0.046 0.954 13 C -0.527 4.527 14 H 0.053 0.947 15 C 0.086 3.914 16 N -0.850 5.850 17 Si 0.883 3.117 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.279 1.279 21 N -0.662 5.662 22 H 0.061 0.939 23 H 0.041 0.959 24 H 0.040 0.960 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.015 0.985 36 H 0.255 0.745 37 H 0.314 0.686 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.158 -4.305 -10.238 11.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.001 4.001 3 H 0.086 0.914 4 C -0.232 4.232 5 C -0.063 4.063 6 N -0.243 5.243 7 C -0.095 4.095 8 C -0.205 4.205 9 C -0.218 4.218 10 C -0.082 4.082 11 C 0.126 3.874 12 H 0.064 0.936 13 C -0.566 4.566 14 H 0.071 0.929 15 C -0.121 4.121 16 N -0.485 5.485 17 Si 0.711 3.289 18 H -0.205 1.205 19 H -0.215 1.215 20 H -0.205 1.205 21 N -0.291 5.291 22 H 0.080 0.920 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.033 0.967 36 H 0.064 0.936 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.435 -3.312 -9.736 10.293 hybrid contribution -0.456 -1.310 0.194 1.401 sum -0.021 -4.623 -9.541 10.602 Atomic orbital electron populations 1.21879 0.96607 1.00506 1.00780 1.20456 0.93661 0.98598 0.87354 0.91365 1.23105 0.97665 1.00878 1.01518 1.21870 0.89926 0.96531 0.98008 1.62020 1.47642 1.12344 1.02285 1.22402 0.96734 0.95709 0.94625 1.23022 0.94258 1.00545 1.02661 1.22992 1.05014 1.01794 0.91971 1.22964 0.98854 0.99390 0.86954 1.18801 0.82257 0.92808 0.93486 0.93573 1.20886 1.35200 1.09242 0.91315 0.92924 1.24904 0.94175 0.94978 0.98024 1.70060 1.34517 1.11176 1.32752 0.86849 0.78569 0.77624 0.85859 1.20457 1.21489 1.20473 1.57935 1.13167 1.22408 1.35605 0.92019 0.93952 0.94078 0.93106 0.92699 0.92560 0.90915 0.90467 0.88269 0.89414 0.89398 0.88578 0.91259 0.96694 0.93551 0.86643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.28 37.16 0.34 -2.07 16 2 C 0.11 2.23 2.63 -70.44 -0.18 2.05 16 3 H 0.07 1.50 7.59 -51.93 -0.39 1.11 16 4 C -0.19 -3.26 4.99 -27.07 -0.13 -3.39 16 5 C 0.06 1.13 5.08 -4.31 -0.02 1.11 16 6 N -0.52 -9.69 4.88 -227.69 -1.11 -10.80 16 7 C 0.01 0.23 5.16 -67.71 -0.35 -0.12 16 8 C -0.17 -2.29 10.46 -26.73 -0.28 -2.57 16 9 C -0.18 -2.36 9.45 -26.73 -0.25 -2.61 16 10 C 0.05 0.98 4.64 -4.47 -0.02 0.96 16 11 C 0.23 5.69 2.00 -69.55 -0.14 5.55 16 12 H 0.05 1.27 6.78 -51.93 -0.35 0.92 16 13 C -0.53 -14.38 8.67 -34.44 -0.30 -14.67 16 14 H 0.05 1.42 7.46 -52.49 -0.39 1.03 16 15 C 0.09 2.37 5.39 -17.82 -0.10 2.28 16 16 N -0.85 -24.47 12.79 55.43 0.71 -23.76 16 17 Si 0.88 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 N -0.66 -15.17 4.97 -105.11 -0.52 -15.69 16 22 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 23 H 0.04 0.63 8.12 -51.93 -0.42 0.21 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.91 7.09 -51.93 -0.37 0.54 16 26 H 0.05 0.84 8.02 -51.93 -0.42 0.43 16 27 H 0.06 0.88 6.31 -51.93 -0.33 0.56 16 28 H 0.07 1.42 6.52 -51.93 -0.34 1.08 16 29 H 0.08 1.23 7.96 -51.93 -0.41 0.82 16 30 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.10 1.28 7.40 -51.93 -0.38 0.89 16 34 H 0.07 1.54 7.49 -51.93 -0.39 1.15 16 35 H 0.01 0.31 6.49 -51.93 -0.34 -0.03 16 36 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.31 7.02 7.99 -39.29 -0.31 6.71 16 LS Contribution 285.46 15.07 4.30 4.30 Total: -1.00 -27.80 285.46 -9.17 -36.98 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.10 Total: 6.17 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -1.43 Total: -13.49 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -0.92 Total: -50.26 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.80 -9.17 -36.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219418196.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.114 kcal (2) G-P(sol) polarization free energy of solvation -27.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds