Wall clock time and date at job start Mon Mar 30 2020 03:19:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08994 * 109.06131 * 2 1
4 4 C 1.54512 * 109.07145 * 241.03303 * 2 1 3
5 5 C 1.50743 * 108.93970 * 163.45756 * 4 2 1
6 6 N 1.48071 * 112.93396 * 92.65400 * 5 4 2
7 7 C 1.46904 * 110.99633 * 84.35178 * 6 5 4
8 8 C 1.52999 * 117.49585 * 124.67187 * 7 6 5
9 9 C 1.53003 * 117.49783 * 56.05001 * 7 6 5
10 10 C 1.47746 * 113.78686 * 318.29165 * 6 5 4
11 11 C 1.50779 * 111.91875 * 318.86828 * 10 6 5
12 12 H 1.09000 * 109.77081 * 334.93722 * 11 10 6
13 13 C 1.50697 * 109.73531 * 214.26473 * 11 10 6
14 14 H 1.07991 * 120.00449 * 1.07558 * 13 11 10
15 15 C 1.37885 * 119.99686 * 181.35390 * 13 11 10
16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 11
17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 11
18 18 H 1.48498 * 109.47416 * 59.99812 * 17 15 13
19 19 H 1.48508 * 109.46609 * 180.02562 * 17 15 13
20 20 H 1.48503 * 109.46903 * 299.99397 * 17 15 13
21 21 N 1.40087 * 109.06832 * 119.02299 * 2 1 3
22 22 H 1.08998 * 109.47322 * 300.97774 * 1 2 3
23 23 H 1.09004 * 109.47255 * 60.97692 * 1 2 3
24 24 H 1.09005 * 109.47464 * 180.97527 * 1 2 3
25 25 H 1.09000 * 109.55839 * 283.29589 * 4 2 1
26 26 H 1.09005 * 109.55622 * 43.51285 * 4 2 1
27 27 H 1.08995 * 108.79190 * 213.54604 * 5 4 2
28 28 H 1.08996 * 108.79062 * 331.76806 * 5 4 2
29 29 H 1.09002 * 115.55152 * 270.37532 * 7 6 5
30 30 H 1.08999 * 117.49896 * 359.97438 * 8 7 6
31 31 H 1.08993 * 117.50134 * 145.02378 * 8 7 6
32 32 H 1.08996 * 117.49775 * 214.97838 * 9 7 6
33 33 H 1.08996 * 117.49635 * 359.97438 * 9 7 6
34 34 H 1.09002 * 108.98819 * 198.24073 * 10 6 5
35 35 H 1.08999 * 108.99547 * 79.50106 * 10 6 5
36 36 H 0.97000 * 119.99651 * 180.02562 * 16 15 13
37 37 H 1.00909 * 110.99367 * 55.27799 * 21 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8859 1.0302 0.0000
4 6 2.0348 -0.7072 -1.2776
5 6 3.4865 -0.3597 -1.4881
6 7 4.4096 -1.3433 -0.8775
7 6 4.6357 -2.4822 -1.7775
8 6 6.0831 -2.8169 -2.1433
9 6 5.1593 -2.1790 -3.1828
10 6 3.9898 -1.8027 0.4625
11 6 3.4569 -0.6708 1.3041
12 1 3.8793 0.2739 0.9616
13 6 3.8202 -0.8964 2.7491
14 1 4.3973 -1.7643 3.0318
15 6 3.4108 0.0025 3.7113
16 7 2.7081 1.0595 3.3671
17 14 3.8546 -0.2812 5.5035
18 1 5.3321 -0.3139 5.6485
19 1 3.2996 0.8200 6.3310
20 1 3.2840 -1.5755 5.9558
21 7 1.9876 -0.6424 1.1577
22 1 -0.3634 0.5289 0.8811
23 1 -0.3634 0.4986 -0.8986
24 1 -0.3634 -1.0275 0.0175
25 1 1.9308 -1.7862 -1.1628
26 1 1.4500 -0.3734 -2.1348
27 1 3.6840 -0.3104 -2.5588
28 1 3.6796 0.6205 -1.0522
29 1 3.9387 -3.3132 -1.6685
30 1 6.8675 -2.1919 -1.7166
31 1 6.3387 -3.8683 -2.2750
32 1 4.8070 -2.8106 -3.9983
33 1 5.3355 -1.1345 -3.4396
34 1 4.8458 -2.2488 0.9688
35 1 3.2122 -2.5584 0.3510
36 1 2.4204 1.6920 4.0440
37 1 1.5986 -1.5703 1.2341
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000219418196.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:34
Heat of formation + Delta-G solvation = 39.138066 kcal
Electronic energy + Delta-G solvation = -16414.800124 eV
Core-core repulsion = 13999.958212 eV
Total energy + Delta-G solvation = -2414.841912 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 224.158 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-39.11405 -36.69230 -33.26479 -32.93059 -30.91526 -27.91082 -26.41531 -24.45719
-22.97611 -21.95873 -20.68254 -19.93886 -18.71501 -16.76568 -15.83533 -15.00821
-14.51259 -14.31449 -14.23309 -13.86067 -13.37007 -12.57674 -12.36308 -11.99517
-11.76476 -11.49380 -11.31382 -11.24382 -10.93006 -10.82455 -10.63700 -10.59356
-10.25789 -10.19858 -9.95183 -9.75685 -9.37275 -8.98963 -8.31870 -7.62414
-6.68517 -5.81401 -3.93666 3.39702 3.44131 3.46689 4.01799 4.27785
4.56200 5.15153 5.18285 5.26510 5.36904 5.47570 5.62112 5.75174
5.78291 5.85094 5.88500 6.04652 6.14261 6.18114 6.20412 6.29233
6.37922 6.41809 6.43801 6.57219 6.67068 6.84439 6.98731 7.05346
7.40079 7.72102 7.85053 7.99633 8.37550 8.74658 9.09521 9.22404
9.73955 11.23810
Molecular weight = 224.16amu
Principal moments of inertia in cm(-1)
A = 0.027082 B = 0.009406 C = 0.007384
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1033.629872 B = 2976.095459 C = 3790.854455
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.113 3.887
3 H 0.068 0.932
4 C -0.189 4.189
5 C 0.064 3.936
6 N -0.519 5.519
7 C 0.015 3.985
8 C -0.167 4.167
9 C -0.180 4.180
10 C 0.046 3.954
11 C 0.233 3.767
12 H 0.046 0.954
13 C -0.527 4.527
14 H 0.053 0.947
15 C 0.086 3.914
16 N -0.850 5.850
17 Si 0.883 3.117
18 H -0.279 1.279
19 H -0.289 1.289
20 H -0.279 1.279
21 N -0.662 5.662
22 H 0.061 0.939
23 H 0.041 0.959
24 H 0.040 0.960
25 H 0.050 0.950
26 H 0.054 0.946
27 H 0.056 0.944
28 H 0.073 0.927
29 H 0.078 0.922
30 H 0.099 0.901
31 H 0.087 0.913
32 H 0.088 0.912
33 H 0.096 0.904
34 H 0.069 0.931
35 H 0.015 0.985
36 H 0.255 0.745
37 H 0.314 0.686
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.158 -4.305 -10.238 11.108
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.001 4.001
3 H 0.086 0.914
4 C -0.232 4.232
5 C -0.063 4.063
6 N -0.243 5.243
7 C -0.095 4.095
8 C -0.205 4.205
9 C -0.218 4.218
10 C -0.082 4.082
11 C 0.126 3.874
12 H 0.064 0.936
13 C -0.566 4.566
14 H 0.071 0.929
15 C -0.121 4.121
16 N -0.485 5.485
17 Si 0.711 3.289
18 H -0.205 1.205
19 H -0.215 1.215
20 H -0.205 1.205
21 N -0.291 5.291
22 H 0.080 0.920
23 H 0.060 0.940
24 H 0.059 0.941
25 H 0.069 0.931
26 H 0.073 0.927
27 H 0.074 0.926
28 H 0.091 0.909
29 H 0.095 0.905
30 H 0.117 0.883
31 H 0.106 0.894
32 H 0.106 0.894
33 H 0.114 0.886
34 H 0.087 0.913
35 H 0.033 0.967
36 H 0.064 0.936
37 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges 0.435 -3.312 -9.736 10.293
hybrid contribution -0.456 -1.310 0.194 1.401
sum -0.021 -4.623 -9.541 10.602
Atomic orbital electron populations
1.21879 0.96607 1.00506 1.00780 1.20456 0.93661 0.98598 0.87354
0.91365 1.23105 0.97665 1.00878 1.01518 1.21870 0.89926 0.96531
0.98008 1.62020 1.47642 1.12344 1.02285 1.22402 0.96734 0.95709
0.94625 1.23022 0.94258 1.00545 1.02661 1.22992 1.05014 1.01794
0.91971 1.22964 0.98854 0.99390 0.86954 1.18801 0.82257 0.92808
0.93486 0.93573 1.20886 1.35200 1.09242 0.91315 0.92924 1.24904
0.94175 0.94978 0.98024 1.70060 1.34517 1.11176 1.32752 0.86849
0.78569 0.77624 0.85859 1.20457 1.21489 1.20473 1.57935 1.13167
1.22408 1.35605 0.92019 0.93952 0.94078 0.93106 0.92699 0.92560
0.90915 0.90467 0.88269 0.89414 0.89398 0.88578 0.91259 0.96694
0.93551 0.86643
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.42 9.28 37.16 0.34 -2.07 16
2 C 0.11 2.23 2.63 -70.44 -0.18 2.05 16
3 H 0.07 1.50 7.59 -51.93 -0.39 1.11 16
4 C -0.19 -3.26 4.99 -27.07 -0.13 -3.39 16
5 C 0.06 1.13 5.08 -4.31 -0.02 1.11 16
6 N -0.52 -9.69 4.88 -227.69 -1.11 -10.80 16
7 C 0.01 0.23 5.16 -67.71 -0.35 -0.12 16
8 C -0.17 -2.29 10.46 -26.73 -0.28 -2.57 16
9 C -0.18 -2.36 9.45 -26.73 -0.25 -2.61 16
10 C 0.05 0.98 4.64 -4.47 -0.02 0.96 16
11 C 0.23 5.69 2.00 -69.55 -0.14 5.55 16
12 H 0.05 1.27 6.78 -51.93 -0.35 0.92 16
13 C -0.53 -14.38 8.67 -34.44 -0.30 -14.67 16
14 H 0.05 1.42 7.46 -52.49 -0.39 1.03 16
15 C 0.09 2.37 5.39 -17.82 -0.10 2.28 16
16 N -0.85 -24.47 12.79 55.43 0.71 -23.76 16
17 Si 0.88 21.32 29.54 -169.99 -5.02 16.30 16
18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
21 N -0.66 -15.17 4.97 -105.11 -0.52 -15.69 16
22 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
23 H 0.04 0.63 8.12 -51.93 -0.42 0.21 16
24 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16
25 H 0.05 0.91 7.09 -51.93 -0.37 0.54 16
26 H 0.05 0.84 8.02 -51.93 -0.42 0.43 16
27 H 0.06 0.88 6.31 -51.93 -0.33 0.56 16
28 H 0.07 1.42 6.52 -51.93 -0.34 1.08 16
29 H 0.08 1.23 7.96 -51.93 -0.41 0.82 16
30 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16
31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16
32 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16
33 H 0.10 1.28 7.40 -51.93 -0.38 0.89 16
34 H 0.07 1.54 7.49 -51.93 -0.39 1.15 16
35 H 0.01 0.31 6.49 -51.93 -0.34 -0.03 16
36 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16
37 H 0.31 7.02 7.99 -39.29 -0.31 6.71 16
LS Contribution 285.46 15.07 4.30 4.30
Total: -1.00 -27.80 285.46 -9.17 -36.98
By element:
Atomic # 1 Polarization: 12.26 SS G_CDS: -6.10 Total: 6.17 kcal
Atomic # 6 Polarization: -12.06 SS G_CDS: -1.43 Total: -13.49 kcal
Atomic # 7 Polarization: -49.33 SS G_CDS: -0.92 Total: -50.26 kcal
Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal
Total LS contribution 4.30 Total: 4.30 kcal
Total: -27.80 -9.17 -36.98 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000219418196.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.114 kcal
(2) G-P(sol) polarization free energy of solvation -27.804 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.310 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.976 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.138 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds