Wall clock time and date at job start Mon Mar 30 2020 03:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.06131 * 2 1 4 4 C 1.54512 * 109.07145 * 241.03303 * 2 1 3 5 5 C 1.50743 * 108.93970 * 163.45756 * 4 2 1 6 6 N 1.48071 * 112.93396 * 92.65400 * 5 4 2 7 7 C 1.46904 * 110.99633 * 84.35178 * 6 5 4 8 8 C 1.52999 * 117.49585 * 124.67187 * 7 6 5 9 9 C 1.53003 * 117.49783 * 56.05001 * 7 6 5 10 10 C 1.47746 * 113.78686 * 318.29165 * 6 5 4 11 11 C 1.50779 * 111.91875 * 318.86828 * 10 6 5 12 12 H 1.09000 * 109.77081 * 334.93722 * 11 10 6 13 13 C 1.50697 * 109.73531 * 214.26473 * 11 10 6 14 14 H 1.07991 * 120.00449 * 1.07558 * 13 11 10 15 15 C 1.37885 * 119.99686 * 181.35390 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 11 18 18 H 1.48498 * 109.47416 * 59.99812 * 17 15 13 19 19 H 1.48508 * 109.46609 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46903 * 299.99397 * 17 15 13 21 21 N 1.40087 * 109.06832 * 119.02299 * 2 1 3 22 22 H 1.08998 * 109.47322 * 300.97774 * 1 2 3 23 23 H 1.09004 * 109.47255 * 60.97692 * 1 2 3 24 24 H 1.09005 * 109.47464 * 180.97527 * 1 2 3 25 25 H 1.09000 * 109.55839 * 283.29589 * 4 2 1 26 26 H 1.09005 * 109.55622 * 43.51285 * 4 2 1 27 27 H 1.08995 * 108.79190 * 213.54604 * 5 4 2 28 28 H 1.08996 * 108.79062 * 331.76806 * 5 4 2 29 29 H 1.09002 * 115.55152 * 270.37532 * 7 6 5 30 30 H 1.08999 * 117.49896 * 359.97438 * 8 7 6 31 31 H 1.08993 * 117.50134 * 145.02378 * 8 7 6 32 32 H 1.08996 * 117.49775 * 214.97838 * 9 7 6 33 33 H 1.08996 * 117.49635 * 359.97438 * 9 7 6 34 34 H 1.09002 * 108.98819 * 198.24073 * 10 6 5 35 35 H 1.08999 * 108.99547 * 79.50106 * 10 6 5 36 36 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 37 37 H 1.00909 * 110.99367 * 55.27799 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8859 1.0302 0.0000 4 6 2.0348 -0.7072 -1.2776 5 6 3.4865 -0.3597 -1.4881 6 7 4.4096 -1.3433 -0.8775 7 6 4.6357 -2.4822 -1.7775 8 6 6.0831 -2.8169 -2.1433 9 6 5.1593 -2.1790 -3.1828 10 6 3.9898 -1.8027 0.4625 11 6 3.4569 -0.6708 1.3041 12 1 3.8793 0.2739 0.9616 13 6 3.8202 -0.8964 2.7491 14 1 4.3973 -1.7643 3.0318 15 6 3.4108 0.0025 3.7113 16 7 2.7081 1.0595 3.3671 17 14 3.8546 -0.2812 5.5035 18 1 5.3321 -0.3139 5.6485 19 1 3.2996 0.8200 6.3310 20 1 3.2840 -1.5755 5.9558 21 7 1.9876 -0.6424 1.1577 22 1 -0.3634 0.5289 0.8811 23 1 -0.3634 0.4986 -0.8986 24 1 -0.3634 -1.0275 0.0175 25 1 1.9308 -1.7862 -1.1628 26 1 1.4500 -0.3734 -2.1348 27 1 3.6840 -0.3104 -2.5588 28 1 3.6796 0.6205 -1.0522 29 1 3.9387 -3.3132 -1.6685 30 1 6.8675 -2.1919 -1.7166 31 1 6.3387 -3.8683 -2.2750 32 1 4.8070 -2.8106 -3.9983 33 1 5.3355 -1.1345 -3.4396 34 1 4.8458 -2.2488 0.9688 35 1 3.2122 -2.5584 0.3510 36 1 2.4204 1.6920 4.0440 37 1 1.5986 -1.5703 1.2341 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219418196.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:34 Heat of formation + Delta-G solvation = 20.485418 kcal Electronic energy + Delta-G solvation = -16415.608963 eV Core-core repulsion = 13999.958212 eV Total energy + Delta-G solvation = -2415.650752 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.65624 -38.04248 -35.11903 -34.45224 -32.78792 -29.39408 -28.23657 -26.25438 -24.47782 -23.05870 -22.16710 -21.67809 -20.21258 -18.66183 -17.29925 -16.59181 -16.22582 -15.98050 -15.88620 -15.40156 -14.75987 -14.24181 -13.98859 -13.64660 -13.22125 -12.96124 -12.91165 -12.69142 -12.61244 -12.46021 -12.34241 -12.20706 -11.97781 -11.59355 -11.43114 -11.14151 -11.04765 -10.88776 -10.44699 -9.07883 -8.45985 -7.92074 -6.12606 1.46108 1.46951 1.53867 2.49232 2.86228 2.96618 3.27222 3.82819 3.96123 4.03062 4.11508 4.23122 4.26973 4.40011 4.44131 4.54595 4.69637 4.76877 4.78470 4.80025 4.89545 4.98917 5.00006 5.07485 5.14694 5.20227 5.33554 5.41196 5.50029 5.53596 5.80885 6.20518 6.33292 6.37233 6.76940 7.21127 7.37281 7.58989 9.10431 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.027082 B = 0.009406 C = 0.007384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.629872 B = 2976.095459 C = 3790.854455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.109 3.891 3 H 0.037 0.963 4 C -0.173 4.173 5 C 0.066 3.934 6 N -0.531 5.531 7 C -0.013 4.013 8 C -0.163 4.163 9 C -0.156 4.156 10 C 0.064 3.936 11 C 0.240 3.760 12 H 0.007 0.993 13 C -0.547 4.547 14 H 0.049 0.951 15 C 0.038 3.962 16 N -0.880 5.880 17 Si 0.946 3.054 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.273 1.273 21 N -0.677 5.677 22 H 0.040 0.960 23 H 0.070 0.930 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.094 0.906 34 H 0.053 0.947 35 H 0.019 0.981 36 H 0.253 0.747 37 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.047 -5.581 -11.722 12.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.004 4.004 3 H 0.055 0.945 4 C -0.214 4.214 5 C -0.061 4.061 6 N -0.255 5.255 7 C -0.122 4.122 8 C -0.201 4.201 9 C -0.194 4.194 10 C -0.065 4.065 11 C 0.134 3.866 12 H 0.025 0.975 13 C -0.586 4.586 14 H 0.067 0.933 15 C -0.165 4.165 16 N -0.516 5.516 17 Si 0.773 3.227 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.199 1.199 21 N -0.307 5.307 22 H 0.059 0.941 23 H 0.089 0.911 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.113 0.887 34 H 0.071 0.929 35 H 0.037 0.963 36 H 0.062 0.938 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.234 -4.597 -11.236 12.142 hybrid contribution -0.352 -0.898 0.600 1.135 sum -0.118 -5.495 -10.636 11.972 Atomic orbital electron populations 1.21768 0.94365 1.01379 1.01210 1.20448 0.95359 0.96821 0.87747 0.94486 1.22875 0.97446 1.00294 1.00824 1.21846 0.90252 0.94959 0.99061 1.61877 1.47838 1.13852 1.01918 1.22481 0.98351 0.95061 0.96279 1.23090 0.92735 1.01794 1.02468 1.23080 1.02906 1.02233 0.91132 1.22541 0.97959 0.97826 0.88172 1.18476 0.83419 0.91975 0.92774 0.97546 1.21286 1.35114 1.09071 0.93096 0.93274 1.25617 0.94182 0.94762 1.01985 1.70200 1.35707 1.11940 1.33785 0.85838 0.78342 0.77551 0.81016 1.20006 1.21290 1.19881 1.57686 1.12204 1.22720 1.38059 0.94126 0.91095 0.92784 0.93133 0.89856 0.89932 0.93838 0.90251 0.89548 0.87194 0.86655 0.88725 0.92875 0.96312 0.93805 0.86332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 9.28 71.98 0.67 -3.65 16 2 C 0.11 4.32 2.63 46.66 0.12 4.45 16 3 H 0.04 1.69 7.59 -2.39 -0.02 1.67 16 4 C -0.17 -5.65 4.99 30.38 0.15 -5.50 16 5 C 0.07 2.28 5.08 85.34 0.43 2.71 16 6 N -0.53 -19.64 4.88 -874.29 -4.27 -23.91 16 7 C -0.01 -0.38 5.16 44.92 0.23 -0.15 16 8 C -0.16 -4.09 10.46 30.59 0.32 -3.77 16 9 C -0.16 -3.55 9.45 30.60 0.29 -3.27 16 10 C 0.06 2.74 4.64 85.42 0.40 3.14 16 11 C 0.24 12.17 2.00 43.30 0.09 12.26 16 12 H 0.01 0.38 6.78 -2.39 -0.02 0.37 16 13 C -0.55 -30.59 8.67 25.60 0.22 -30.37 16 14 H 0.05 2.71 7.46 -2.92 -0.02 2.69 16 15 C 0.04 2.15 5.39 84.66 0.46 2.60 16 16 N -0.88 -52.09 12.79 21.45 0.27 -51.82 16 17 Si 0.95 44.44 29.54 68.60 2.03 46.47 16 18 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 20 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 21 N -0.68 -31.68 4.97 -486.45 -2.42 -34.09 16 22 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.07 1.95 8.12 -2.39 -0.02 1.93 16 24 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 25 H 0.05 1.69 7.09 -2.39 -0.02 1.67 16 26 H 0.08 2.28 8.02 -2.38 -0.02 2.26 16 27 H 0.08 2.40 6.31 -2.39 -0.02 2.39 16 28 H 0.04 1.75 6.52 -2.39 -0.02 1.74 16 29 H 0.08 2.34 7.96 -2.39 -0.02 2.32 16 30 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.09 2.21 7.40 -2.39 -0.02 2.19 16 34 H 0.05 2.41 7.49 -2.39 -0.02 2.39 16 35 H 0.02 0.78 6.49 -2.39 -0.02 0.76 16 36 H 0.25 14.41 8.31 -92.71 -0.77 13.63 16 37 H 0.32 14.28 7.99 -89.69 -0.72 13.56 16 Total: -1.00 -61.20 285.46 -0.68 -61.88 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.32 Total: 23.02 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: 3.38 Total: -21.54 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -6.41 Total: -109.82 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -61.20 -0.68 -61.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219418196.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.362 kcal (2) G-P(sol) polarization free energy of solvation -61.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds