Wall clock time and date at job start Mon Mar 30 2020 03:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 108.75723 * 2 1 4 4 C 1.50744 * 108.78916 * 118.34587 * 2 1 3 5 5 C 1.54515 * 108.94739 * 213.42832 * 4 2 1 6 6 N 1.40082 * 111.50873 * 283.99310 * 5 4 2 7 7 C 1.46896 * 111.00346 * 188.15548 * 6 5 4 8 8 C 1.52997 * 117.50305 * 114.97772 * 7 6 5 9 9 C 1.53001 * 117.50049 * 46.35157 * 7 6 5 10 10 C 1.47684 * 114.57057 * 61.45289 * 6 5 4 11 11 C 1.50781 * 108.09932 * 278.68251 * 10 6 5 12 12 H 1.09000 * 108.98650 * 334.06802 * 11 10 6 13 13 C 1.50695 * 108.99181 * 215.24070 * 11 10 6 14 14 H 1.07999 * 120.00538 * 358.83117 * 13 11 10 15 15 C 1.37881 * 119.99661 * 178.83465 * 13 11 10 16 16 N 1.31520 * 120.00186 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 120.00030 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47297 * 89.99863 * 17 15 13 19 19 H 1.48503 * 109.47261 * 330.00044 * 17 15 13 20 20 H 1.48500 * 109.47454 * 210.00037 * 17 15 13 21 21 N 1.47747 * 111.85016 * 94.64903 * 11 10 6 22 22 H 1.08993 * 109.47410 * 301.64977 * 1 2 3 23 23 H 1.09007 * 109.47246 * 61.65673 * 1 2 3 24 24 H 1.09002 * 109.46908 * 181.65135 * 1 2 3 25 25 H 1.08996 * 109.55653 * 93.58809 * 4 2 1 26 26 H 1.09004 * 109.55555 * 333.26616 * 4 2 1 27 27 H 1.08999 * 109.07400 * 163.47063 * 5 4 2 28 28 H 1.09004 * 109.02092 * 44.48020 * 5 4 2 29 29 H 1.09003 * 115.54574 * 260.68843 * 7 6 5 30 30 H 1.09000 * 117.49905 * 0.02562 * 8 7 6 31 31 H 1.09003 * 117.49914 * 145.01559 * 8 7 6 32 32 H 1.09001 * 117.50064 * 214.98180 * 9 7 6 33 33 H 1.08995 * 117.49560 * 0.02562 * 9 7 6 34 34 H 1.08999 * 109.73847 * 159.03110 * 10 6 5 35 35 H 1.08998 * 109.77632 * 38.35259 * 10 6 5 36 36 H 0.97001 * 119.99697 * 359.97438 * 16 15 13 37 37 H 1.00907 * 110.99681 * 84.90696 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8805 1.0322 0.0000 4 6 2.0155 -0.6776 1.2560 5 6 3.3318 -0.0080 1.7105 6 7 4.4137 -0.4111 0.9173 7 6 5.6837 0.0752 1.4725 8 6 6.6822 -0.9702 1.9736 9 6 5.9133 -0.1052 2.9744 10 6 4.2918 -0.0597 -0.5120 11 6 3.4175 -1.0935 -1.1756 12 1 3.4809 -2.0252 -0.6136 13 6 3.9171 -1.3315 -2.5772 14 1 4.7648 -0.7759 -2.9501 15 6 3.2919 -2.2588 -3.3837 16 7 2.2598 -2.9358 -2.9296 17 14 3.9107 -2.5535 -5.1214 18 1 4.9369 -3.6268 -5.1061 19 1 4.5104 -1.3029 -5.6521 20 1 2.7768 -2.9650 -5.9876 21 7 2.0053 -0.6630 -1.2350 22 1 -0.3634 0.5392 0.8747 23 1 -0.3634 0.4879 -0.9045 24 1 -0.3633 -1.0273 0.0296 25 1 2.1939 -1.7339 1.0551 26 1 1.2646 -0.5752 2.0394 27 1 3.5299 -0.2793 2.7475 28 1 3.2225 1.0743 1.6404 29 1 6.0871 0.9740 1.0061 30 1 6.3968 -2.0189 1.8908 31 1 7.7428 -0.7594 1.8367 32 1 6.4682 0.6747 3.4960 33 1 5.1222 -0.5851 3.5503 34 1 5.2780 -0.0589 -0.9763 35 1 3.8371 0.9258 -0.6119 36 1 1.9387 -2.7830 -2.0271 37 1 1.8375 -0.0844 -2.0445 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219418271.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:36 Heat of formation + Delta-G solvation = 35.812497 kcal Electronic energy + Delta-G solvation = -16443.787603 eV Core-core repulsion = 14028.801483 eV Total energy + Delta-G solvation = -2414.986120 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.31305 -36.64158 -33.58876 -33.20437 -30.74104 -27.85447 -26.50484 -24.36936 -22.75846 -21.87739 -21.03693 -19.85944 -18.77013 -16.97340 -16.18315 -15.24205 -14.82968 -14.47506 -14.04856 -13.63103 -13.30723 -12.61949 -12.53898 -12.24041 -11.91385 -11.61941 -11.35167 -11.11523 -10.89808 -10.82317 -10.60005 -10.41120 -10.21036 -10.10160 -9.98947 -9.94139 -9.72295 -8.40100 -8.25541 -7.69011 -7.01369 -6.12372 -3.95442 3.50103 3.52697 3.68523 4.02212 4.22494 4.64645 5.09308 5.11530 5.19448 5.30386 5.34905 5.44276 5.63569 5.71090 5.78440 5.88035 5.91473 5.97523 6.09106 6.17100 6.20872 6.26702 6.30421 6.40145 6.50615 6.59413 6.73328 6.79206 6.94305 7.42159 7.76556 7.90528 8.10245 8.42742 8.73921 8.87018 9.13098 9.87083 11.27656 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.024068 B = 0.010030 C = 0.007548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.103909 B = 2790.883738 C = 3708.572631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.083 3.917 3 H 0.012 0.988 4 C -0.113 4.113 5 C 0.077 3.923 6 N -0.525 5.525 7 C 0.018 3.982 8 C -0.165 4.165 9 C -0.189 4.189 10 C 0.061 3.939 11 C 0.210 3.790 12 H 0.044 0.956 13 C -0.621 4.621 14 H 0.045 0.955 15 C 0.036 3.964 16 N -0.893 5.893 17 Si 1.064 2.936 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.286 1.286 21 N -0.682 5.682 22 H 0.042 0.958 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.008 0.992 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.019 0.981 36 H 0.294 0.706 37 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.585 6.303 9.120 11.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 H 0.030 0.970 4 C -0.151 4.151 5 C -0.052 4.052 6 N -0.249 5.249 7 C -0.091 4.091 8 C -0.203 4.203 9 C -0.226 4.226 10 C -0.066 4.066 11 C 0.103 3.897 12 H 0.062 0.938 13 C -0.660 4.660 14 H 0.063 0.937 15 C -0.175 4.175 16 N -0.527 5.527 17 Si 0.894 3.106 18 H -0.217 1.217 19 H -0.219 1.219 20 H -0.212 1.212 21 N -0.316 5.316 22 H 0.061 0.939 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.101 0.899 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.026 0.974 29 H 0.103 0.897 30 H 0.118 0.882 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.089 0.911 35 H 0.037 0.963 36 H 0.108 0.892 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.042 4.350 7.994 9.327 hybrid contribution 0.749 2.730 1.246 3.093 sum 2.791 7.080 9.240 11.970 Atomic orbital electron populations 1.21846 0.96019 1.01769 0.99930 1.21158 0.94424 0.94721 0.92379 0.96980 1.21582 0.95008 1.02110 0.96406 1.21042 0.91355 0.95950 0.96863 1.58884 1.00045 1.62411 1.03531 1.22393 0.93716 0.98094 0.94887 1.23053 0.96503 0.98066 1.02668 1.23119 1.03807 1.03554 0.92139 1.22654 1.01801 0.97787 0.84371 1.19032 0.81867 0.92849 0.95911 0.93823 1.22005 1.18105 1.26972 0.98919 0.93675 1.25603 0.94734 0.92892 1.04235 1.70519 1.22060 1.38897 1.21251 0.83635 0.75671 0.75658 0.75639 1.21704 1.21859 1.21212 1.60939 1.23479 1.45748 1.01432 0.93896 0.93405 0.92200 0.89916 0.91827 0.91745 0.97377 0.89659 0.88164 0.89241 0.89253 0.88553 0.91099 0.96315 0.89240 0.84759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.22 37.16 0.34 -1.99 16 2 C 0.08 1.59 2.57 -68.23 -0.18 1.42 16 3 H 0.01 0.24 6.52 -51.92 -0.34 -0.10 16 4 C -0.11 -2.02 5.19 -27.07 -0.14 -2.16 16 5 C 0.08 1.32 4.81 -6.55 -0.03 1.29 16 6 N -0.53 -9.92 4.15 -231.69 -0.96 -10.88 16 7 C 0.02 0.29 5.30 -67.72 -0.36 -0.07 16 8 C -0.16 -2.36 10.46 -26.73 -0.28 -2.64 16 9 C -0.19 -2.46 9.63 -26.73 -0.26 -2.72 16 10 C 0.06 1.33 4.81 -4.51 -0.02 1.31 16 11 C 0.21 5.23 1.65 -69.51 -0.11 5.11 16 12 H 0.04 1.23 7.05 -51.93 -0.37 0.87 16 13 C -0.62 -17.19 8.31 -34.44 -0.29 -17.47 16 14 H 0.04 1.25 7.44 -52.49 -0.39 0.86 16 15 C 0.04 1.01 5.38 -17.82 -0.10 0.91 16 16 N -0.89 -26.78 13.48 55.43 0.75 -26.03 16 17 Si 1.06 25.21 29.90 -169.99 -5.08 20.12 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 N -0.68 -15.84 4.73 -101.93 -0.48 -16.32 16 22 H 0.04 0.61 8.07 -51.93 -0.42 0.19 16 23 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.08 1.71 7.19 -51.93 -0.37 1.34 16 26 H 0.06 0.97 7.68 -51.93 -0.40 0.57 16 27 H 0.06 0.99 5.92 -51.93 -0.31 0.68 16 28 H 0.01 0.14 7.59 -51.93 -0.39 -0.25 16 29 H 0.09 1.34 8.04 -51.93 -0.42 0.92 16 30 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.10 1.26 6.60 -51.93 -0.34 0.92 16 34 H 0.07 1.59 7.20 -51.93 -0.37 1.21 16 35 H 0.02 0.40 6.78 -51.93 -0.35 0.05 16 36 H 0.29 8.89 6.32 -40.82 -0.26 8.63 16 37 H 0.33 8.09 8.51 -39.29 -0.33 7.76 16 LS Contribution 282.55 15.07 4.26 4.26 Total: -1.00 -28.82 282.55 -8.92 -37.74 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -5.98 Total: 8.13 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -1.42 Total: -17.02 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.70 Total: -53.23 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.08 Total: 20.12 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.82 -8.92 -37.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219418271.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.551 kcal (2) G-P(sol) polarization free energy of solvation -28.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds