Wall clock time and date at job start Mon Mar 30 2020 03:19:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09007 * 108.75723 * 2 1
4 4 C 1.50744 * 108.78916 * 118.34587 * 2 1 3
5 5 C 1.54515 * 108.94739 * 213.42832 * 4 2 1
6 6 N 1.40082 * 111.50873 * 283.99310 * 5 4 2
7 7 C 1.46896 * 111.00346 * 188.15548 * 6 5 4
8 8 C 1.52997 * 117.50305 * 114.97772 * 7 6 5
9 9 C 1.53001 * 117.50049 * 46.35157 * 7 6 5
10 10 C 1.47684 * 114.57057 * 61.45289 * 6 5 4
11 11 C 1.50781 * 108.09932 * 278.68251 * 10 6 5
12 12 H 1.09000 * 108.98650 * 334.06802 * 11 10 6
13 13 C 1.50695 * 108.99181 * 215.24070 * 11 10 6
14 14 H 1.07999 * 120.00538 * 358.83117 * 13 11 10
15 15 C 1.37881 * 119.99661 * 178.83465 * 13 11 10
16 16 N 1.31520 * 120.00186 * 359.97438 * 15 13 11
17 17 Si 1.86798 * 120.00030 * 179.97438 * 15 13 11
18 18 H 1.48506 * 109.47297 * 89.99863 * 17 15 13
19 19 H 1.48503 * 109.47261 * 330.00044 * 17 15 13
20 20 H 1.48500 * 109.47454 * 210.00037 * 17 15 13
21 21 N 1.47747 * 111.85016 * 94.64903 * 11 10 6
22 22 H 1.08993 * 109.47410 * 301.64977 * 1 2 3
23 23 H 1.09007 * 109.47246 * 61.65673 * 1 2 3
24 24 H 1.09002 * 109.46908 * 181.65135 * 1 2 3
25 25 H 1.08996 * 109.55653 * 93.58809 * 4 2 1
26 26 H 1.09004 * 109.55555 * 333.26616 * 4 2 1
27 27 H 1.08999 * 109.07400 * 163.47063 * 5 4 2
28 28 H 1.09004 * 109.02092 * 44.48020 * 5 4 2
29 29 H 1.09003 * 115.54574 * 260.68843 * 7 6 5
30 30 H 1.09000 * 117.49905 * 0.02562 * 8 7 6
31 31 H 1.09003 * 117.49914 * 145.01559 * 8 7 6
32 32 H 1.09001 * 117.50064 * 214.98180 * 9 7 6
33 33 H 1.08995 * 117.49560 * 0.02562 * 9 7 6
34 34 H 1.08999 * 109.73847 * 159.03110 * 10 6 5
35 35 H 1.08998 * 109.77632 * 38.35259 * 10 6 5
36 36 H 0.97001 * 119.99697 * 359.97438 * 16 15 13
37 37 H 1.00907 * 110.99681 * 84.90696 * 21 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8805 1.0322 0.0000
4 6 2.0155 -0.6776 1.2560
5 6 3.3318 -0.0080 1.7105
6 7 4.4137 -0.4111 0.9173
7 6 5.6837 0.0752 1.4725
8 6 6.6822 -0.9702 1.9736
9 6 5.9133 -0.1052 2.9744
10 6 4.2918 -0.0597 -0.5120
11 6 3.4175 -1.0935 -1.1756
12 1 3.4809 -2.0252 -0.6136
13 6 3.9171 -1.3315 -2.5772
14 1 4.7648 -0.7759 -2.9501
15 6 3.2919 -2.2588 -3.3837
16 7 2.2598 -2.9358 -2.9296
17 14 3.9107 -2.5535 -5.1214
18 1 4.9369 -3.6268 -5.1061
19 1 4.5104 -1.3029 -5.6521
20 1 2.7768 -2.9650 -5.9876
21 7 2.0053 -0.6630 -1.2350
22 1 -0.3634 0.5392 0.8747
23 1 -0.3634 0.4879 -0.9045
24 1 -0.3633 -1.0273 0.0296
25 1 2.1939 -1.7339 1.0551
26 1 1.2646 -0.5752 2.0394
27 1 3.5299 -0.2793 2.7475
28 1 3.2225 1.0743 1.6404
29 1 6.0871 0.9740 1.0061
30 1 6.3968 -2.0189 1.8908
31 1 7.7428 -0.7594 1.8367
32 1 6.4682 0.6747 3.4960
33 1 5.1222 -0.5851 3.5503
34 1 5.2780 -0.0589 -0.9763
35 1 3.8371 0.9258 -0.6119
36 1 1.9387 -2.7830 -2.0271
37 1 1.8375 -0.0844 -2.0445
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000219418271.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:36
Heat of formation + Delta-G solvation = 35.812497 kcal
Electronic energy + Delta-G solvation = -16443.787603 eV
Core-core repulsion = 14028.801483 eV
Total energy + Delta-G solvation = -2414.986120 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 224.158 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-39.31305 -36.64158 -33.58876 -33.20437 -30.74104 -27.85447 -26.50484 -24.36936
-22.75846 -21.87739 -21.03693 -19.85944 -18.77013 -16.97340 -16.18315 -15.24205
-14.82968 -14.47506 -14.04856 -13.63103 -13.30723 -12.61949 -12.53898 -12.24041
-11.91385 -11.61941 -11.35167 -11.11523 -10.89808 -10.82317 -10.60005 -10.41120
-10.21036 -10.10160 -9.98947 -9.94139 -9.72295 -8.40100 -8.25541 -7.69011
-7.01369 -6.12372 -3.95442 3.50103 3.52697 3.68523 4.02212 4.22494
4.64645 5.09308 5.11530 5.19448 5.30386 5.34905 5.44276 5.63569
5.71090 5.78440 5.88035 5.91473 5.97523 6.09106 6.17100 6.20872
6.26702 6.30421 6.40145 6.50615 6.59413 6.73328 6.79206 6.94305
7.42159 7.76556 7.90528 8.10245 8.42742 8.73921 8.87018 9.13098
9.87083 11.27656
Molecular weight = 224.16amu
Principal moments of inertia in cm(-1)
A = 0.024068 B = 0.010030 C = 0.007548
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1163.103909 B = 2790.883738 C = 3708.572631
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C 0.083 3.917
3 H 0.012 0.988
4 C -0.113 4.113
5 C 0.077 3.923
6 N -0.525 5.525
7 C 0.018 3.982
8 C -0.165 4.165
9 C -0.189 4.189
10 C 0.061 3.939
11 C 0.210 3.790
12 H 0.044 0.956
13 C -0.621 4.621
14 H 0.045 0.955
15 C 0.036 3.964
16 N -0.893 5.893
17 Si 1.064 2.936
18 H -0.290 1.290
19 H -0.292 1.292
20 H -0.286 1.286
21 N -0.682 5.682
22 H 0.042 0.958
23 H 0.047 0.953
24 H 0.059 0.941
25 H 0.082 0.918
26 H 0.063 0.937
27 H 0.064 0.936
28 H 0.008 0.992
29 H 0.086 0.914
30 H 0.100 0.900
31 H 0.089 0.911
32 H 0.089 0.911
33 H 0.096 0.904
34 H 0.071 0.929
35 H 0.019 0.981
36 H 0.294 0.706
37 H 0.334 0.666
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.585 6.303 9.120 11.383
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.027 4.027
3 H 0.030 0.970
4 C -0.151 4.151
5 C -0.052 4.052
6 N -0.249 5.249
7 C -0.091 4.091
8 C -0.203 4.203
9 C -0.226 4.226
10 C -0.066 4.066
11 C 0.103 3.897
12 H 0.062 0.938
13 C -0.660 4.660
14 H 0.063 0.937
15 C -0.175 4.175
16 N -0.527 5.527
17 Si 0.894 3.106
18 H -0.217 1.217
19 H -0.219 1.219
20 H -0.212 1.212
21 N -0.316 5.316
22 H 0.061 0.939
23 H 0.066 0.934
24 H 0.078 0.922
25 H 0.101 0.899
26 H 0.082 0.918
27 H 0.083 0.917
28 H 0.026 0.974
29 H 0.103 0.897
30 H 0.118 0.882
31 H 0.108 0.892
32 H 0.107 0.893
33 H 0.114 0.886
34 H 0.089 0.911
35 H 0.037 0.963
36 H 0.108 0.892
37 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges 2.042 4.350 7.994 9.327
hybrid contribution 0.749 2.730 1.246 3.093
sum 2.791 7.080 9.240 11.970
Atomic orbital electron populations
1.21846 0.96019 1.01769 0.99930 1.21158 0.94424 0.94721 0.92379
0.96980 1.21582 0.95008 1.02110 0.96406 1.21042 0.91355 0.95950
0.96863 1.58884 1.00045 1.62411 1.03531 1.22393 0.93716 0.98094
0.94887 1.23053 0.96503 0.98066 1.02668 1.23119 1.03807 1.03554
0.92139 1.22654 1.01801 0.97787 0.84371 1.19032 0.81867 0.92849
0.95911 0.93823 1.22005 1.18105 1.26972 0.98919 0.93675 1.25603
0.94734 0.92892 1.04235 1.70519 1.22060 1.38897 1.21251 0.83635
0.75671 0.75658 0.75639 1.21704 1.21859 1.21212 1.60939 1.23479
1.45748 1.01432 0.93896 0.93405 0.92200 0.89916 0.91827 0.91745
0.97377 0.89659 0.88164 0.89241 0.89253 0.88553 0.91099 0.96315
0.89240 0.84759
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.33 9.22 37.16 0.34 -1.99 16
2 C 0.08 1.59 2.57 -68.23 -0.18 1.42 16
3 H 0.01 0.24 6.52 -51.92 -0.34 -0.10 16
4 C -0.11 -2.02 5.19 -27.07 -0.14 -2.16 16
5 C 0.08 1.32 4.81 -6.55 -0.03 1.29 16
6 N -0.53 -9.92 4.15 -231.69 -0.96 -10.88 16
7 C 0.02 0.29 5.30 -67.72 -0.36 -0.07 16
8 C -0.16 -2.36 10.46 -26.73 -0.28 -2.64 16
9 C -0.19 -2.46 9.63 -26.73 -0.26 -2.72 16
10 C 0.06 1.33 4.81 -4.51 -0.02 1.31 16
11 C 0.21 5.23 1.65 -69.51 -0.11 5.11 16
12 H 0.04 1.23 7.05 -51.93 -0.37 0.87 16
13 C -0.62 -17.19 8.31 -34.44 -0.29 -17.47 16
14 H 0.04 1.25 7.44 -52.49 -0.39 0.86 16
15 C 0.04 1.01 5.38 -17.82 -0.10 0.91 16
16 N -0.89 -26.78 13.48 55.43 0.75 -26.03 16
17 Si 1.06 25.21 29.90 -169.99 -5.08 20.12 16
18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16
19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16
20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16
21 N -0.68 -15.84 4.73 -101.93 -0.48 -16.32 16
22 H 0.04 0.61 8.07 -51.93 -0.42 0.19 16
23 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16
24 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16
25 H 0.08 1.71 7.19 -51.93 -0.37 1.34 16
26 H 0.06 0.97 7.68 -51.93 -0.40 0.57 16
27 H 0.06 0.99 5.92 -51.93 -0.31 0.68 16
28 H 0.01 0.14 7.59 -51.93 -0.39 -0.25 16
29 H 0.09 1.34 8.04 -51.93 -0.42 0.92 16
30 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16
31 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16
32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16
33 H 0.10 1.26 6.60 -51.93 -0.34 0.92 16
34 H 0.07 1.59 7.20 -51.93 -0.37 1.21 16
35 H 0.02 0.40 6.78 -51.93 -0.35 0.05 16
36 H 0.29 8.89 6.32 -40.82 -0.26 8.63 16
37 H 0.33 8.09 8.51 -39.29 -0.33 7.76 16
LS Contribution 282.55 15.07 4.26 4.26
Total: -1.00 -28.82 282.55 -8.92 -37.74
By element:
Atomic # 1 Polarization: 14.11 SS G_CDS: -5.98 Total: 8.13 kcal
Atomic # 6 Polarization: -15.60 SS G_CDS: -1.42 Total: -17.02 kcal
Atomic # 7 Polarization: -52.54 SS G_CDS: -0.70 Total: -53.23 kcal
Atomic # 14 Polarization: 25.21 SS G_CDS: -5.08 Total: 20.12 kcal
Total LS contribution 4.26 Total: 4.26 kcal
Total: -28.82 -8.92 -37.74 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000219418271.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.551 kcal
(2) G-P(sol) polarization free energy of solvation -28.822 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.729 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.738 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.812 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds