Wall clock time and date at job start Mon Mar 30 2020 03:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 108.75723 * 2 1 4 4 C 1.50744 * 108.78916 * 118.34587 * 2 1 3 5 5 C 1.54515 * 108.94739 * 213.42832 * 4 2 1 6 6 N 1.40082 * 111.50873 * 283.99310 * 5 4 2 7 7 C 1.46896 * 111.00346 * 188.15548 * 6 5 4 8 8 C 1.52997 * 117.50305 * 114.97772 * 7 6 5 9 9 C 1.53001 * 117.50049 * 46.35157 * 7 6 5 10 10 C 1.47684 * 114.57057 * 61.45289 * 6 5 4 11 11 C 1.50781 * 108.09932 * 278.68251 * 10 6 5 12 12 H 1.09000 * 108.98650 * 334.06802 * 11 10 6 13 13 C 1.50695 * 108.99181 * 215.24070 * 11 10 6 14 14 H 1.07999 * 120.00538 * 358.83117 * 13 11 10 15 15 C 1.37881 * 119.99661 * 178.83465 * 13 11 10 16 16 N 1.31520 * 120.00186 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 120.00030 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47297 * 89.99863 * 17 15 13 19 19 H 1.48503 * 109.47261 * 330.00044 * 17 15 13 20 20 H 1.48500 * 109.47454 * 210.00037 * 17 15 13 21 21 N 1.47747 * 111.85016 * 94.64903 * 11 10 6 22 22 H 1.08993 * 109.47410 * 301.64977 * 1 2 3 23 23 H 1.09007 * 109.47246 * 61.65673 * 1 2 3 24 24 H 1.09002 * 109.46908 * 181.65135 * 1 2 3 25 25 H 1.08996 * 109.55653 * 93.58809 * 4 2 1 26 26 H 1.09004 * 109.55555 * 333.26616 * 4 2 1 27 27 H 1.08999 * 109.07400 * 163.47063 * 5 4 2 28 28 H 1.09004 * 109.02092 * 44.48020 * 5 4 2 29 29 H 1.09003 * 115.54574 * 260.68843 * 7 6 5 30 30 H 1.09000 * 117.49905 * 0.02562 * 8 7 6 31 31 H 1.09003 * 117.49914 * 145.01559 * 8 7 6 32 32 H 1.09001 * 117.50064 * 214.98180 * 9 7 6 33 33 H 1.08995 * 117.49560 * 0.02562 * 9 7 6 34 34 H 1.08999 * 109.73847 * 159.03110 * 10 6 5 35 35 H 1.08998 * 109.77632 * 38.35259 * 10 6 5 36 36 H 0.97001 * 119.99697 * 359.97438 * 16 15 13 37 37 H 1.00907 * 110.99681 * 84.90696 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8805 1.0322 0.0000 4 6 2.0155 -0.6776 1.2560 5 6 3.3318 -0.0080 1.7105 6 7 4.4137 -0.4111 0.9173 7 6 5.6837 0.0752 1.4725 8 6 6.6822 -0.9702 1.9736 9 6 5.9133 -0.1052 2.9744 10 6 4.2918 -0.0597 -0.5120 11 6 3.4175 -1.0935 -1.1756 12 1 3.4809 -2.0252 -0.6136 13 6 3.9171 -1.3315 -2.5772 14 1 4.7648 -0.7759 -2.9501 15 6 3.2919 -2.2588 -3.3837 16 7 2.2598 -2.9358 -2.9296 17 14 3.9107 -2.5535 -5.1214 18 1 4.9369 -3.6268 -5.1061 19 1 4.5104 -1.3029 -5.6521 20 1 2.7768 -2.9650 -5.9876 21 7 2.0053 -0.6630 -1.2350 22 1 -0.3634 0.5392 0.8747 23 1 -0.3634 0.4879 -0.9045 24 1 -0.3633 -1.0273 0.0296 25 1 2.1939 -1.7339 1.0551 26 1 1.2646 -0.5752 2.0394 27 1 3.5299 -0.2793 2.7475 28 1 3.2225 1.0743 1.6404 29 1 6.0871 0.9740 1.0061 30 1 6.3968 -2.0189 1.8908 31 1 7.7428 -0.7594 1.8367 32 1 6.4682 0.6747 3.4960 33 1 5.1222 -0.5851 3.5503 34 1 5.2780 -0.0589 -0.9763 35 1 3.8371 0.9258 -0.6119 36 1 1.9387 -2.7830 -2.0271 37 1 1.8375 -0.0844 -2.0445 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219418271.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:35 Heat of formation + Delta-G solvation = 16.666485 kcal Electronic energy + Delta-G solvation = -16444.617836 eV Core-core repulsion = 14028.801483 eV Total energy + Delta-G solvation = -2415.816353 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.81078 -38.07788 -35.48875 -34.63385 -32.66710 -29.32088 -28.30179 -26.26022 -24.25849 -23.08079 -22.66020 -21.29044 -20.45086 -18.90829 -17.62430 -16.83651 -16.32842 -16.11337 -15.55851 -15.53285 -14.74317 -14.39145 -14.05819 -13.64648 -13.53798 -13.14359 -12.87693 -12.68792 -12.51924 -12.40918 -12.19702 -12.12999 -11.89185 -11.78026 -11.39973 -11.31977 -11.11448 -10.45310 -10.41688 -9.18732 -8.83931 -8.33094 -6.21850 1.56806 1.65004 1.82298 2.62959 2.86546 2.88636 3.24510 3.64393 3.89506 3.91716 3.98016 4.05762 4.14692 4.27480 4.35180 4.46085 4.57815 4.61991 4.69818 4.74654 4.83060 4.88444 4.95342 4.98320 5.07171 5.10052 5.27908 5.29724 5.42101 5.52389 5.97094 6.20993 6.29779 6.49199 6.76325 6.81896 7.03026 7.69097 9.00478 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.024068 B = 0.010030 C = 0.007548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.103909 B = 2790.883738 C = 3708.572631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.081 3.919 3 H 0.015 0.985 4 C -0.110 4.110 5 C 0.078 3.922 6 N -0.539 5.539 7 C -0.012 4.012 8 C -0.168 4.168 9 C -0.157 4.157 10 C 0.077 3.923 11 C 0.220 3.780 12 H 0.003 0.997 13 C -0.634 4.634 14 H 0.039 0.961 15 C -0.011 4.011 16 N -0.919 5.919 17 Si 1.112 2.888 18 H -0.280 1.280 19 H -0.276 1.276 20 H -0.286 1.286 21 N -0.694 5.694 22 H 0.077 0.923 23 H 0.044 0.956 24 H 0.047 0.953 25 H 0.048 0.952 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.014 0.986 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.099 0.901 34 H 0.056 0.944 35 H 0.017 0.983 36 H 0.281 0.719 37 H 0.325 0.675 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.040 7.532 10.400 13.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.029 4.029 3 H 0.032 0.968 4 C -0.148 4.148 5 C -0.051 4.051 6 N -0.262 5.262 7 C -0.120 4.120 8 C -0.206 4.206 9 C -0.194 4.194 10 C -0.051 4.051 11 C 0.113 3.887 12 H 0.021 0.979 13 C -0.673 4.673 14 H 0.057 0.943 15 C -0.215 4.215 16 N -0.554 5.554 17 Si 0.936 3.064 18 H -0.206 1.206 19 H -0.201 1.201 20 H -0.211 1.211 21 N -0.327 5.327 22 H 0.096 0.904 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.115 0.885 27 H 0.107 0.893 28 H 0.032 0.968 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.128 0.872 32 H 0.137 0.863 33 H 0.117 0.883 34 H 0.075 0.925 35 H 0.036 0.964 36 H 0.093 0.907 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.506 5.590 9.306 11.141 hybrid contribution 0.624 2.365 0.928 2.616 sum 3.130 7.955 10.234 13.334 Atomic orbital electron populations 1.21787 0.93985 1.01524 1.01495 1.21312 0.96021 0.94399 0.91124 0.96752 1.21599 0.96666 0.99770 0.96734 1.21107 0.90331 0.96018 0.97650 1.58764 1.02050 1.63174 1.02248 1.22510 0.92900 0.99030 0.97582 1.23100 0.97410 0.96849 1.03288 1.23206 1.03015 1.03056 0.90162 1.22252 1.00017 0.96441 0.86428 1.18720 0.83490 0.92269 0.94251 0.97946 1.22365 1.17822 1.26747 1.00365 0.94304 1.26955 0.94285 0.92537 1.07759 1.70635 1.23605 1.40335 1.20860 0.82996 0.75445 0.76470 0.71484 1.20618 1.20108 1.21144 1.60711 1.22492 1.46548 1.02921 0.90402 0.93638 0.93423 0.93336 0.88497 0.89314 0.96830 0.89373 0.90034 0.87245 0.86330 0.88271 0.92498 0.96439 0.90662 0.85766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 9.22 71.98 0.66 -3.55 16 2 C 0.08 3.05 2.57 43.97 0.11 3.17 16 3 H 0.01 0.55 6.52 -2.38 -0.02 0.54 16 4 C -0.11 -3.82 5.19 30.38 0.16 -3.66 16 5 C 0.08 2.53 4.81 88.05 0.42 2.95 16 6 N -0.54 -20.16 4.15 -886.94 -3.68 -23.83 16 7 C -0.01 -0.37 5.30 44.92 0.24 -0.13 16 8 C -0.17 -4.54 10.46 30.59 0.32 -4.22 16 9 C -0.16 -3.59 9.63 30.60 0.29 -3.30 16 10 C 0.08 3.39 4.81 85.43 0.41 3.80 16 11 C 0.22 11.35 1.65 43.28 0.07 11.42 16 12 H 0.00 0.16 7.05 -2.39 -0.02 0.14 16 13 C -0.63 -36.09 8.31 25.60 0.21 -35.88 16 14 H 0.04 2.20 7.44 -2.91 -0.02 2.18 16 15 C -0.01 -0.65 5.38 84.65 0.46 -0.19 16 16 N -0.92 -56.66 13.48 21.45 0.29 -56.37 16 17 Si 1.11 51.21 29.90 68.60 2.05 53.27 16 18 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 21 N -0.69 -33.10 4.73 -476.39 -2.26 -35.35 16 22 H 0.08 1.98 8.07 -2.39 -0.02 1.96 16 23 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 24 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.05 2.04 7.19 -2.39 -0.02 2.02 16 26 H 0.10 2.70 7.68 -2.38 -0.02 2.68 16 27 H 0.09 2.46 5.92 -2.39 -0.01 2.45 16 28 H 0.01 0.44 7.59 -2.38 -0.02 0.42 16 29 H 0.09 2.64 8.04 -2.39 -0.02 2.62 16 30 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.10 2.24 6.60 -2.39 -0.02 2.22 16 34 H 0.06 2.61 7.20 -2.39 -0.02 2.59 16 35 H 0.02 0.76 6.78 -2.39 -0.02 0.74 16 36 H 0.28 17.70 6.32 -92.71 -0.59 17.12 16 37 H 0.33 16.21 8.51 -89.69 -0.76 15.45 16 Total: -1.00 -64.05 282.55 0.23 -63.82 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.46 Total: 28.05 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 3.36 Total: -29.58 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -5.64 Total: -115.55 kcal Atomic # 14 Polarization: 51.21 SS G_CDS: 2.05 Total: 53.27 kcal Total: -64.05 0.23 -63.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219418271.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.484 kcal (2) G-P(sol) polarization free energy of solvation -64.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds