Wall clock time and date at job start Mon Mar 30 2020 03:19:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31001 * 1
3 3 C 1.50699 * 119.99846 * 2 1
4 4 N 1.46906 * 109.47140 * 124.99973 * 3 2 1
5 5 C 1.48070 * 110.99795 * 66.04724 * 4 3 2
6 6 C 1.50741 * 112.93896 * 84.35214 * 5 4 3
7 7 C 1.54520 * 108.93935 * 92.65271 * 6 5 4
8 8 H 1.09000 * 109.06927 * 44.43774 * 7 6 5
9 9 C 1.53004 * 109.07029 * 163.46160 * 7 6 5
10 10 N 1.40085 * 111.51042 * 283.98283 * 7 6 5
11 11 C 1.47685 * 114.56675 * 61.45111 * 10 7 6
12 12 H 1.08997 * 109.73677 * 38.34155 * 11 10 7
13 13 C 1.50700 * 109.73664 * 159.04014 * 11 10 7
14 14 H 1.07990 * 120.00220 * 119.99799 * 13 11 10
15 15 C 1.37876 * 119.99593 * 300.00083 * 13 11 10
16 16 N 1.31522 * 119.99958 * 179.97438 * 15 13 11
17 17 Si 1.86801 * 120.00227 * 359.97438 * 15 13 11
18 18 H 1.48500 * 109.47102 * 90.00331 * 17 15 13
19 19 H 1.48498 * 109.47189 * 210.00336 * 17 15 13
20 20 H 1.48500 * 109.47034 * 330.00038 * 17 15 13
21 21 C 1.47751 * 110.99953 * 193.64521 * 4 3 2
22 22 H 1.08001 * 120.00021 * 359.97438 * 1 2 3
23 23 H 1.07998 * 119.99970 * 180.02562 * 1 2 3
24 24 H 1.07994 * 120.00398 * 180.02562 * 2 1 3
25 25 H 1.09004 * 109.47103 * 5.00074 * 3 2 1
26 26 H 1.09000 * 109.47247 * 244.99952 * 3 2 1
27 27 H 1.08994 * 108.78621 * 205.24309 * 5 4 3
28 28 H 1.08998 * 108.78891 * 323.57250 * 5 4 3
29 29 H 1.09003 * 109.55720 * 212.48881 * 6 5 4
30 30 H 1.08997 * 109.56364 * 332.70540 * 6 5 4
31 31 H 1.08999 * 109.47056 * 60.00100 * 9 7 6
32 32 H 1.08999 * 109.46967 * 180.02562 * 9 7 6
33 33 H 1.09006 * 109.47067 * 299.99689 * 9 7 6
34 34 H 1.00895 * 110.99792 * 188.14412 * 10 7 6
35 35 H 0.96998 * 120.00067 * 180.02562 * 16 15 13
36 36 H 1.09002 * 108.99363 * 313.43815 * 21 4 3
37 37 H 1.08995 * 108.99302 * 72.18543 * 21 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 7 2.9963 1.3320 1.1346
5 6 4.0578 0.3124 0.9730
6 6 5.2076 0.7909 0.1237
7 6 6.2909 1.3988 1.0427
8 1 6.4374 0.7442 1.9019
9 6 7.6045 1.5042 0.2651
10 7 5.9241 2.6724 1.4963
11 6 4.6892 2.7037 2.3057
12 1 4.6494 1.8259 2.9506
13 6 4.6627 3.9548 3.1455
14 1 3.8595 4.6670 3.0281
15 6 5.6641 4.1901 4.0635
16 7 5.6414 5.2822 4.7961
17 14 7.0532 2.9578 4.2669
18 1 8.1615 3.3040 3.3412
19 1 7.5475 2.9956 5.6667
20 1 6.5549 1.5942 3.9547
21 6 3.5116 2.6976 1.3641
22 1 -0.5400 0.9353 0.0004
23 1 -0.5400 -0.9353 0.0004
24 1 1.8500 -0.9352 -0.0004
25 1 1.3585 2.1317 0.0896
26 1 2.6213 1.4026 -0.9314
27 1 4.4377 0.0421 1.9581
28 1 3.6255 -0.5739 0.5086
29 1 5.6276 -0.0496 -0.4290
30 1 4.8541 1.5478 -0.5764
31 1 7.4609 2.1439 -0.6057
32 1 8.3738 1.9321 0.9079
33 1 7.9146 0.5113 -0.0605
34 1 6.6876 3.1162 1.9843
35 1 6.3460 5.4479 5.4417
36 1 3.8181 3.1262 0.4099
37 1 2.7158 3.3105 1.7873
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000219418384.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:41
Heat of formation + Delta-G solvation = 36.574700 kcal
Electronic energy + Delta-G solvation = -16402.146702 eV
Core-core repulsion = 13987.193634 eV
Total energy + Delta-G solvation = -2414.953068 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 224.158 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-39.14554 -35.99397 -33.45624 -32.96218 -31.35404 -28.66493 -27.19686 -25.49325
-24.30463 -22.03846 -20.10013 -19.33421 -18.82807 -16.99953 -16.25472 -15.49203
-14.82104 -14.67202 -14.30825 -13.80395 -13.68231 -12.92527 -12.74733 -12.33512
-12.03149 -11.90704 -11.81684 -11.56132 -11.18625 -11.08967 -10.92717 -10.64378
-10.42289 -10.07952 -9.82016 -9.70591 -9.36193 -9.19047 -8.71301 -7.62076
-7.37929 -6.17724 -4.18342 2.39780 3.13116 3.25839 3.27677 4.26439
4.51010 4.87249 5.01568 5.13180 5.30441 5.37280 5.39743 5.61524
5.62854 5.84189 5.86603 5.90832 5.96081 6.06378 6.12456 6.21561
6.28553 6.39455 6.50891 6.56083 6.70670 6.73461 6.77283 6.89624
7.14685 7.49019 7.64087 7.71579 8.27018 8.39659 8.63515 8.88789
9.41802 10.94606
Molecular weight = 224.16amu
Principal moments of inertia in cm(-1)
A = 0.029408 B = 0.009646 C = 0.007893
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 951.904381 B = 2902.124905 C = 3546.749439
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.136 4.136
3 C 0.081 3.919
4 N -0.545 5.545
5 C 0.055 3.945
6 C -0.138 4.138
7 C 0.096 3.904
8 H 0.014 0.986
9 C -0.149 4.149
10 N -0.703 5.703
11 C 0.190 3.810
12 H 0.016 0.984
13 C -0.504 4.504
14 H 0.082 0.918
15 C 0.074 3.926
16 N -0.891 5.891
17 Si 0.868 3.132
18 H -0.275 1.275
19 H -0.289 1.289
20 H -0.265 1.265
21 C 0.082 3.918
22 H 0.095 0.905
23 H 0.093 0.907
24 H 0.104 0.896
25 H 0.075 0.925
26 H 0.037 0.963
27 H 0.068 0.932
28 H 0.061 0.939
29 H 0.061 0.939
30 H 0.069 0.931
31 H 0.061 0.939
32 H 0.047 0.953
33 H 0.051 0.949
34 H 0.335 0.665
35 H 0.266 0.734
36 H 0.036 0.964
37 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.370 -10.233 -9.537 14.188
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.234 4.234
2 C -0.154 4.154
3 C -0.047 4.047
4 N -0.269 5.269
5 C -0.073 4.073
6 C -0.178 4.178
7 C -0.016 4.016
8 H 0.031 0.969
9 C -0.206 4.206
10 N -0.343 5.343
11 C 0.085 3.915
12 H 0.034 0.966
13 C -0.544 4.544
14 H 0.100 0.900
15 C -0.129 4.129
16 N -0.529 5.529
17 Si 0.697 3.303
18 H -0.202 1.202
19 H -0.216 1.216
20 H -0.190 1.190
21 C -0.045 4.045
22 H 0.113 0.887
23 H 0.111 0.889
24 H 0.122 0.878
25 H 0.093 0.907
26 H 0.055 0.945
27 H 0.086 0.914
28 H 0.079 0.921
29 H 0.080 0.920
30 H 0.088 0.912
31 H 0.080 0.920
32 H 0.066 0.934
33 H 0.070 0.930
34 H 0.161 0.839
35 H 0.076 0.924
36 H 0.055 0.945
37 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -2.848 -10.118 -9.516 14.179
hybrid contribution 1.719 -0.729 0.282 1.889
sum -1.128 -10.847 -9.234 14.290
Atomic orbital electron populations
1.23733 0.95827 1.01495 1.02364 1.22936 0.95841 0.98341 0.98288
1.21161 0.95375 0.95471 0.92664 1.62295 1.17648 1.07843 1.39137
1.21939 0.91053 0.94441 0.99844 1.22047 0.96813 1.00177 0.98754
1.20411 0.93759 0.91936 0.95488 0.96875 1.21971 0.96947 1.00907
1.00811 1.58310 1.08679 1.19255 1.48055 1.19260 0.85149 0.97518
0.89619 0.96624 1.21085 1.10561 1.05056 1.17656 0.90027 1.25018
0.97660 0.94986 0.95284 1.69872 1.33891 1.25239 1.23865 0.87116
0.82994 0.82778 0.77432 1.20171 1.21623 1.18987 1.21954 0.97626
0.86106 0.98785 0.88653 0.88851 0.87770 0.90669 0.94478 0.91373
0.92058 0.92008 0.91203 0.92018 0.93351 0.93009 0.83938 0.92420
0.94537 0.90832
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -2.28 14.32 29.01 0.42 -1.86 16
2 C -0.14 -1.77 9.16 -36.03 -0.33 -2.10 16
3 C 0.08 1.21 5.31 -4.97 -0.03 1.19 16
4 N -0.54 -9.84 4.72 -237.12 -1.12 -10.96 16
5 C 0.05 0.92 5.00 -4.31 -0.02 0.90 16
6 C -0.14 -2.25 4.94 -27.07 -0.13 -2.38 16
7 C 0.10 1.81 2.44 -70.43 -0.17 1.64 16
8 H 0.01 0.28 6.93 -51.93 -0.36 -0.08 16
9 C -0.15 -2.39 9.24 37.16 0.34 -2.04 16
10 N -0.70 -15.59 5.16 -105.10 -0.54 -16.13 16
11 C 0.19 4.53 1.54 -69.55 -0.11 4.42 16
12 H 0.02 0.41 5.89 -51.93 -0.31 0.11 16
13 C -0.50 -14.05 9.19 -34.44 -0.32 -14.37 16
14 H 0.08 2.44 7.70 -52.49 -0.40 2.04 16
15 C 0.07 2.10 5.40 -17.82 -0.10 2.00 16
16 N -0.89 -26.78 13.96 55.43 0.77 -26.00 16
17 Si 0.87 21.28 24.64 -169.99 -4.19 17.09 16
18 H -0.28 -6.48 6.92 56.52 0.39 -6.08 16
19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
20 H -0.26 -6.39 5.90 56.52 0.33 -6.05 16
21 C 0.08 1.72 4.59 -4.47 -0.02 1.70 16
22 H 0.10 1.06 7.84 -52.49 -0.41 0.65 16
23 H 0.09 0.93 8.06 -52.49 -0.42 0.50 16
24 H 0.10 1.28 6.74 -52.49 -0.35 0.92 16
25 H 0.07 1.11 7.68 -51.93 -0.40 0.71 16
26 H 0.04 0.54 7.60 -51.93 -0.39 0.15 16
27 H 0.07 1.26 6.52 -51.93 -0.34 0.92 16
28 H 0.06 0.87 6.07 -51.93 -0.32 0.56 16
29 H 0.06 0.85 8.04 -51.93 -0.42 0.43 16
30 H 0.07 1.19 6.67 -51.93 -0.35 0.85 16
31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16
32 H 0.05 0.80 8.09 -51.93 -0.42 0.38 16
33 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16
34 H 0.34 7.92 4.27 -39.29 -0.17 7.75 16
35 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16
36 H 0.04 0.76 7.08 -51.93 -0.37 0.40 16
37 H 0.07 1.61 7.49 -51.93 -0.39 1.22 16
LS Contribution 276.79 15.07 4.17 4.17
Total: -1.00 -28.90 276.79 -7.24 -36.14
By element:
Atomic # 1 Polarization: 12.48 SS G_CDS: -5.87 Total: 6.60 kcal
Atomic # 6 Polarization: -10.45 SS G_CDS: -0.46 Total: -10.91 kcal
Atomic # 7 Polarization: -52.20 SS G_CDS: -0.89 Total: -53.09 kcal
Atomic # 14 Polarization: 21.28 SS G_CDS: -4.19 Total: 17.09 kcal
Total LS contribution 4.17 Total: 4.17 kcal
Total: -28.90 -7.24 -36.14 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000219418384.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.712 kcal
(2) G-P(sol) polarization free energy of solvation -28.896 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.816 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.137 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.575 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds