Wall clock time and date at job start Mon Mar 30 2020 03:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99846 * 2 1 4 4 N 1.46906 * 109.47140 * 124.99973 * 3 2 1 5 5 C 1.48070 * 110.99795 * 66.04724 * 4 3 2 6 6 C 1.50741 * 112.93896 * 84.35214 * 5 4 3 7 7 C 1.54520 * 108.93935 * 92.65271 * 6 5 4 8 8 H 1.09000 * 109.06927 * 44.43774 * 7 6 5 9 9 C 1.53004 * 109.07029 * 163.46160 * 7 6 5 10 10 N 1.40085 * 111.51042 * 283.98283 * 7 6 5 11 11 C 1.47685 * 114.56675 * 61.45111 * 10 7 6 12 12 H 1.08997 * 109.73677 * 38.34155 * 11 10 7 13 13 C 1.50700 * 109.73664 * 159.04014 * 11 10 7 14 14 H 1.07990 * 120.00220 * 119.99799 * 13 11 10 15 15 C 1.37876 * 119.99593 * 300.00083 * 13 11 10 16 16 N 1.31522 * 119.99958 * 179.97438 * 15 13 11 17 17 Si 1.86801 * 120.00227 * 359.97438 * 15 13 11 18 18 H 1.48500 * 109.47102 * 90.00331 * 17 15 13 19 19 H 1.48498 * 109.47189 * 210.00336 * 17 15 13 20 20 H 1.48500 * 109.47034 * 330.00038 * 17 15 13 21 21 C 1.47751 * 110.99953 * 193.64521 * 4 3 2 22 22 H 1.08001 * 120.00021 * 359.97438 * 1 2 3 23 23 H 1.07998 * 119.99970 * 180.02562 * 1 2 3 24 24 H 1.07994 * 120.00398 * 180.02562 * 2 1 3 25 25 H 1.09004 * 109.47103 * 5.00074 * 3 2 1 26 26 H 1.09000 * 109.47247 * 244.99952 * 3 2 1 27 27 H 1.08994 * 108.78621 * 205.24309 * 5 4 3 28 28 H 1.08998 * 108.78891 * 323.57250 * 5 4 3 29 29 H 1.09003 * 109.55720 * 212.48881 * 6 5 4 30 30 H 1.08997 * 109.56364 * 332.70540 * 6 5 4 31 31 H 1.08999 * 109.47056 * 60.00100 * 9 7 6 32 32 H 1.08999 * 109.46967 * 180.02562 * 9 7 6 33 33 H 1.09006 * 109.47067 * 299.99689 * 9 7 6 34 34 H 1.00895 * 110.99792 * 188.14412 * 10 7 6 35 35 H 0.96998 * 120.00067 * 180.02562 * 16 15 13 36 36 H 1.09002 * 108.99363 * 313.43815 * 21 4 3 37 37 H 1.08995 * 108.99302 * 72.18543 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1346 5 6 4.0578 0.3124 0.9730 6 6 5.2076 0.7909 0.1237 7 6 6.2909 1.3988 1.0427 8 1 6.4374 0.7442 1.9019 9 6 7.6045 1.5042 0.2651 10 7 5.9241 2.6724 1.4963 11 6 4.6892 2.7037 2.3057 12 1 4.6494 1.8259 2.9506 13 6 4.6627 3.9548 3.1455 14 1 3.8595 4.6670 3.0281 15 6 5.6641 4.1901 4.0635 16 7 5.6414 5.2822 4.7961 17 14 7.0532 2.9578 4.2669 18 1 8.1615 3.3040 3.3412 19 1 7.5475 2.9956 5.6667 20 1 6.5549 1.5942 3.9547 21 6 3.5116 2.6976 1.3641 22 1 -0.5400 0.9353 0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 1.8500 -0.9352 -0.0004 25 1 1.3585 2.1317 0.0896 26 1 2.6213 1.4026 -0.9314 27 1 4.4377 0.0421 1.9581 28 1 3.6255 -0.5739 0.5086 29 1 5.6276 -0.0496 -0.4290 30 1 4.8541 1.5478 -0.5764 31 1 7.4609 2.1439 -0.6057 32 1 8.3738 1.9321 0.9079 33 1 7.9146 0.5113 -0.0605 34 1 6.6876 3.1162 1.9843 35 1 6.3460 5.4479 5.4417 36 1 3.8181 3.1262 0.4099 37 1 2.7158 3.3105 1.7873 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219418384.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:41 Heat of formation + Delta-G solvation = 36.574700 kcal Electronic energy + Delta-G solvation = -16402.146702 eV Core-core repulsion = 13987.193634 eV Total energy + Delta-G solvation = -2414.953068 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.14554 -35.99397 -33.45624 -32.96218 -31.35404 -28.66493 -27.19686 -25.49325 -24.30463 -22.03846 -20.10013 -19.33421 -18.82807 -16.99953 -16.25472 -15.49203 -14.82104 -14.67202 -14.30825 -13.80395 -13.68231 -12.92527 -12.74733 -12.33512 -12.03149 -11.90704 -11.81684 -11.56132 -11.18625 -11.08967 -10.92717 -10.64378 -10.42289 -10.07952 -9.82016 -9.70591 -9.36193 -9.19047 -8.71301 -7.62076 -7.37929 -6.17724 -4.18342 2.39780 3.13116 3.25839 3.27677 4.26439 4.51010 4.87249 5.01568 5.13180 5.30441 5.37280 5.39743 5.61524 5.62854 5.84189 5.86603 5.90832 5.96081 6.06378 6.12456 6.21561 6.28553 6.39455 6.50891 6.56083 6.70670 6.73461 6.77283 6.89624 7.14685 7.49019 7.64087 7.71579 8.27018 8.39659 8.63515 8.88789 9.41802 10.94606 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.029408 B = 0.009646 C = 0.007893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.904381 B = 2902.124905 C = 3546.749439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.136 4.136 3 C 0.081 3.919 4 N -0.545 5.545 5 C 0.055 3.945 6 C -0.138 4.138 7 C 0.096 3.904 8 H 0.014 0.986 9 C -0.149 4.149 10 N -0.703 5.703 11 C 0.190 3.810 12 H 0.016 0.984 13 C -0.504 4.504 14 H 0.082 0.918 15 C 0.074 3.926 16 N -0.891 5.891 17 Si 0.868 3.132 18 H -0.275 1.275 19 H -0.289 1.289 20 H -0.265 1.265 21 C 0.082 3.918 22 H 0.095 0.905 23 H 0.093 0.907 24 H 0.104 0.896 25 H 0.075 0.925 26 H 0.037 0.963 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.335 0.665 35 H 0.266 0.734 36 H 0.036 0.964 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.370 -10.233 -9.537 14.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.154 4.154 3 C -0.047 4.047 4 N -0.269 5.269 5 C -0.073 4.073 6 C -0.178 4.178 7 C -0.016 4.016 8 H 0.031 0.969 9 C -0.206 4.206 10 N -0.343 5.343 11 C 0.085 3.915 12 H 0.034 0.966 13 C -0.544 4.544 14 H 0.100 0.900 15 C -0.129 4.129 16 N -0.529 5.529 17 Si 0.697 3.303 18 H -0.202 1.202 19 H -0.216 1.216 20 H -0.190 1.190 21 C -0.045 4.045 22 H 0.113 0.887 23 H 0.111 0.889 24 H 0.122 0.878 25 H 0.093 0.907 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.161 0.839 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.848 -10.118 -9.516 14.179 hybrid contribution 1.719 -0.729 0.282 1.889 sum -1.128 -10.847 -9.234 14.290 Atomic orbital electron populations 1.23733 0.95827 1.01495 1.02364 1.22936 0.95841 0.98341 0.98288 1.21161 0.95375 0.95471 0.92664 1.62295 1.17648 1.07843 1.39137 1.21939 0.91053 0.94441 0.99844 1.22047 0.96813 1.00177 0.98754 1.20411 0.93759 0.91936 0.95488 0.96875 1.21971 0.96947 1.00907 1.00811 1.58310 1.08679 1.19255 1.48055 1.19260 0.85149 0.97518 0.89619 0.96624 1.21085 1.10561 1.05056 1.17656 0.90027 1.25018 0.97660 0.94986 0.95284 1.69872 1.33891 1.25239 1.23865 0.87116 0.82994 0.82778 0.77432 1.20171 1.21623 1.18987 1.21954 0.97626 0.86106 0.98785 0.88653 0.88851 0.87770 0.90669 0.94478 0.91373 0.92058 0.92008 0.91203 0.92018 0.93351 0.93009 0.83938 0.92420 0.94537 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.28 14.32 29.01 0.42 -1.86 16 2 C -0.14 -1.77 9.16 -36.03 -0.33 -2.10 16 3 C 0.08 1.21 5.31 -4.97 -0.03 1.19 16 4 N -0.54 -9.84 4.72 -237.12 -1.12 -10.96 16 5 C 0.05 0.92 5.00 -4.31 -0.02 0.90 16 6 C -0.14 -2.25 4.94 -27.07 -0.13 -2.38 16 7 C 0.10 1.81 2.44 -70.43 -0.17 1.64 16 8 H 0.01 0.28 6.93 -51.93 -0.36 -0.08 16 9 C -0.15 -2.39 9.24 37.16 0.34 -2.04 16 10 N -0.70 -15.59 5.16 -105.10 -0.54 -16.13 16 11 C 0.19 4.53 1.54 -69.55 -0.11 4.42 16 12 H 0.02 0.41 5.89 -51.93 -0.31 0.11 16 13 C -0.50 -14.05 9.19 -34.44 -0.32 -14.37 16 14 H 0.08 2.44 7.70 -52.49 -0.40 2.04 16 15 C 0.07 2.10 5.40 -17.82 -0.10 2.00 16 16 N -0.89 -26.78 13.96 55.43 0.77 -26.00 16 17 Si 0.87 21.28 24.64 -169.99 -4.19 17.09 16 18 H -0.28 -6.48 6.92 56.52 0.39 -6.08 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.26 -6.39 5.90 56.52 0.33 -6.05 16 21 C 0.08 1.72 4.59 -4.47 -0.02 1.70 16 22 H 0.10 1.06 7.84 -52.49 -0.41 0.65 16 23 H 0.09 0.93 8.06 -52.49 -0.42 0.50 16 24 H 0.10 1.28 6.74 -52.49 -0.35 0.92 16 25 H 0.07 1.11 7.68 -51.93 -0.40 0.71 16 26 H 0.04 0.54 7.60 -51.93 -0.39 0.15 16 27 H 0.07 1.26 6.52 -51.93 -0.34 0.92 16 28 H 0.06 0.87 6.07 -51.93 -0.32 0.56 16 29 H 0.06 0.85 8.04 -51.93 -0.42 0.43 16 30 H 0.07 1.19 6.67 -51.93 -0.35 0.85 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.80 8.09 -51.93 -0.42 0.38 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.34 7.92 4.27 -39.29 -0.17 7.75 16 35 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.04 0.76 7.08 -51.93 -0.37 0.40 16 37 H 0.07 1.61 7.49 -51.93 -0.39 1.22 16 LS Contribution 276.79 15.07 4.17 4.17 Total: -1.00 -28.90 276.79 -7.24 -36.14 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -5.87 Total: 6.60 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -0.46 Total: -10.91 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.89 Total: -53.09 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.19 Total: 17.09 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.90 -7.24 -36.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219418384.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.712 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds