Wall clock time and date at job start Mon Mar 30 2020 03:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99846 * 2 1 4 4 N 1.46906 * 109.47140 * 124.99973 * 3 2 1 5 5 C 1.48070 * 110.99795 * 66.04724 * 4 3 2 6 6 C 1.50741 * 112.93896 * 84.35214 * 5 4 3 7 7 C 1.54520 * 108.93935 * 92.65271 * 6 5 4 8 8 H 1.09000 * 109.06927 * 44.43774 * 7 6 5 9 9 C 1.53004 * 109.07029 * 163.46160 * 7 6 5 10 10 N 1.40085 * 111.51042 * 283.98283 * 7 6 5 11 11 C 1.47685 * 114.56675 * 61.45111 * 10 7 6 12 12 H 1.08997 * 109.73677 * 38.34155 * 11 10 7 13 13 C 1.50700 * 109.73664 * 159.04014 * 11 10 7 14 14 H 1.07990 * 120.00220 * 119.99799 * 13 11 10 15 15 C 1.37876 * 119.99593 * 300.00083 * 13 11 10 16 16 N 1.31522 * 119.99958 * 179.97438 * 15 13 11 17 17 Si 1.86801 * 120.00227 * 359.97438 * 15 13 11 18 18 H 1.48500 * 109.47102 * 90.00331 * 17 15 13 19 19 H 1.48498 * 109.47189 * 210.00336 * 17 15 13 20 20 H 1.48500 * 109.47034 * 330.00038 * 17 15 13 21 21 C 1.47751 * 110.99953 * 193.64521 * 4 3 2 22 22 H 1.08001 * 120.00021 * 359.97438 * 1 2 3 23 23 H 1.07998 * 119.99970 * 180.02562 * 1 2 3 24 24 H 1.07994 * 120.00398 * 180.02562 * 2 1 3 25 25 H 1.09004 * 109.47103 * 5.00074 * 3 2 1 26 26 H 1.09000 * 109.47247 * 244.99952 * 3 2 1 27 27 H 1.08994 * 108.78621 * 205.24309 * 5 4 3 28 28 H 1.08998 * 108.78891 * 323.57250 * 5 4 3 29 29 H 1.09003 * 109.55720 * 212.48881 * 6 5 4 30 30 H 1.08997 * 109.56364 * 332.70540 * 6 5 4 31 31 H 1.08999 * 109.47056 * 60.00100 * 9 7 6 32 32 H 1.08999 * 109.46967 * 180.02562 * 9 7 6 33 33 H 1.09006 * 109.47067 * 299.99689 * 9 7 6 34 34 H 1.00895 * 110.99792 * 188.14412 * 10 7 6 35 35 H 0.96998 * 120.00067 * 180.02562 * 16 15 13 36 36 H 1.09002 * 108.99363 * 313.43815 * 21 4 3 37 37 H 1.08995 * 108.99302 * 72.18543 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1346 5 6 4.0578 0.3124 0.9730 6 6 5.2076 0.7909 0.1237 7 6 6.2909 1.3988 1.0427 8 1 6.4374 0.7442 1.9019 9 6 7.6045 1.5042 0.2651 10 7 5.9241 2.6724 1.4963 11 6 4.6892 2.7037 2.3057 12 1 4.6494 1.8259 2.9506 13 6 4.6627 3.9548 3.1455 14 1 3.8595 4.6670 3.0281 15 6 5.6641 4.1901 4.0635 16 7 5.6414 5.2822 4.7961 17 14 7.0532 2.9578 4.2669 18 1 8.1615 3.3040 3.3412 19 1 7.5475 2.9956 5.6667 20 1 6.5549 1.5942 3.9547 21 6 3.5116 2.6976 1.3641 22 1 -0.5400 0.9353 0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 1.8500 -0.9352 -0.0004 25 1 1.3585 2.1317 0.0896 26 1 2.6213 1.4026 -0.9314 27 1 4.4377 0.0421 1.9581 28 1 3.6255 -0.5739 0.5086 29 1 5.6276 -0.0496 -0.4290 30 1 4.8541 1.5478 -0.5764 31 1 7.4609 2.1439 -0.6057 32 1 8.3738 1.9321 0.9079 33 1 7.9146 0.5113 -0.0605 34 1 6.6876 3.1162 1.9843 35 1 6.3460 5.4479 5.4417 36 1 3.8181 3.1262 0.4099 37 1 2.7158 3.3105 1.7873 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219418384.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:40 Heat of formation + Delta-G solvation = 15.359349 kcal Electronic energy + Delta-G solvation = -16403.066669 eV Core-core repulsion = 13987.193634 eV Total energy + Delta-G solvation = -2415.873035 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.67774 -37.37004 -35.34353 -34.16676 -33.24015 -30.00072 -28.77117 -27.30070 -25.62218 -23.63249 -21.52484 -20.83647 -20.10475 -19.08506 -17.91465 -16.74168 -16.48589 -16.08591 -15.84875 -15.52624 -15.05396 -14.81746 -14.00544 -13.76396 -13.62775 -13.31316 -13.26689 -12.82486 -12.78768 -12.49941 -12.46639 -12.26598 -11.93825 -11.72736 -11.50118 -11.33861 -11.23087 -10.85762 -10.28983 -9.14622 -9.02846 -8.38592 -6.44629 1.16407 1.24632 1.32139 1.43165 2.18306 2.86760 3.15031 3.51626 3.82407 3.94952 4.02898 4.25708 4.31527 4.36698 4.52113 4.56455 4.65067 4.67078 4.74711 4.81617 4.86779 4.93598 5.00990 5.08259 5.09914 5.18159 5.32907 5.39912 5.51000 5.76259 5.93635 6.09583 6.23861 6.30919 6.52861 6.57009 6.90205 7.19712 8.77056 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.029408 B = 0.009646 C = 0.007893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.904381 B = 2902.124905 C = 3546.749439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.153 4.153 3 C 0.083 3.917 4 N -0.556 5.556 5 C 0.054 3.946 6 C -0.129 4.129 7 C 0.082 3.918 8 H 0.002 0.998 9 C -0.143 4.143 10 N -0.703 5.703 11 C 0.200 3.800 12 H 0.000 1.000 13 C -0.516 4.516 14 H 0.043 0.957 15 C 0.022 3.978 16 N -0.936 5.936 17 Si 0.932 3.068 18 H -0.256 1.256 19 H -0.289 1.289 20 H -0.260 1.260 21 C 0.095 3.905 22 H 0.096 0.904 23 H 0.115 0.885 24 H 0.116 0.884 25 H 0.069 0.931 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.084 0.916 34 H 0.324 0.676 35 H 0.269 0.731 36 H 0.034 0.966 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.793 -12.888 -11.298 17.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.171 4.171 3 C -0.044 4.044 4 N -0.281 5.281 5 C -0.073 4.073 6 C -0.168 4.168 7 C -0.029 4.029 8 H 0.020 0.980 9 C -0.200 4.200 10 N -0.342 5.342 11 C 0.094 3.906 12 H 0.018 0.982 13 C -0.556 4.556 14 H 0.062 0.938 15 C -0.177 4.177 16 N -0.576 5.576 17 Si 0.758 3.242 18 H -0.181 1.181 19 H -0.215 1.215 20 H -0.184 1.184 21 C -0.032 4.032 22 H 0.114 0.886 23 H 0.133 0.867 24 H 0.134 0.866 25 H 0.088 0.912 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.111 0.889 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.148 0.852 35 H 0.078 0.922 36 H 0.052 0.948 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.281 -12.789 -11.308 17.223 hybrid contribution 1.411 0.115 0.815 1.634 sum -0.870 -12.675 -10.493 16.478 Atomic orbital electron populations 1.23966 0.95514 1.02623 0.99919 1.22870 0.96269 0.97536 1.00452 1.21196 0.94779 0.96810 0.91653 1.62183 1.18468 1.06108 1.41342 1.21995 0.91145 0.95004 0.99201 1.22001 0.95785 1.01002 0.98001 1.20693 0.96356 0.89867 0.95991 0.98045 1.21929 0.94855 1.02972 1.00261 1.58244 1.07498 1.21432 1.46982 1.18991 0.87339 0.94484 0.89809 0.98229 1.21330 1.09542 1.05875 1.18807 0.93846 1.25793 1.00306 0.96764 0.94842 1.70012 1.35222 1.27378 1.24950 0.86075 0.80182 0.80331 0.77628 1.18082 1.21538 1.18424 1.21600 0.95826 0.88133 0.97671 0.88593 0.86694 0.86582 0.91224 0.93813 0.93470 0.88918 0.88381 0.91874 0.91589 0.94135 0.89748 0.85168 0.92174 0.94753 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.71 14.32 67.78 0.97 -2.74 16 2 C -0.15 -3.56 9.16 25.65 0.23 -3.32 16 3 C 0.08 2.34 5.31 85.56 0.45 2.79 16 4 N -0.56 -19.55 4.72 -904.11 -4.27 -23.82 16 5 C 0.05 1.67 5.00 85.34 0.43 2.10 16 6 C -0.13 -3.77 4.94 30.38 0.15 -3.62 16 7 C 0.08 2.91 2.44 46.66 0.11 3.02 16 8 H 0.00 0.07 6.93 -2.39 -0.02 0.06 16 9 C -0.14 -4.09 9.24 71.98 0.67 -3.42 16 10 N -0.70 -30.63 5.16 -486.41 -2.51 -33.14 16 11 C 0.20 9.68 1.54 43.30 0.07 9.75 16 12 H 0.00 0.01 5.89 -2.39 -0.01 0.00 16 13 C -0.52 -29.95 9.19 25.60 0.24 -29.72 16 14 H 0.04 2.77 7.70 -2.92 -0.02 2.75 16 15 C 0.02 1.30 5.40 84.65 0.46 1.75 16 16 N -0.94 -58.12 13.96 21.45 0.30 -57.82 16 17 Si 0.93 44.46 24.64 68.60 1.69 46.15 16 18 H -0.26 -11.32 6.92 99.48 0.69 -10.63 16 19 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 20 H -0.26 -12.05 5.90 99.48 0.59 -11.46 16 21 C 0.10 4.05 4.59 85.42 0.39 4.44 16 22 H 0.10 1.93 7.84 -2.91 -0.02 1.90 16 23 H 0.11 1.86 8.06 -2.91 -0.02 1.83 16 24 H 0.12 2.42 6.74 -2.91 -0.02 2.40 16 25 H 0.07 2.01 7.68 -2.38 -0.02 1.99 16 26 H 0.04 1.18 7.60 -2.39 -0.02 1.16 16 27 H 0.05 1.67 6.52 -2.39 -0.02 1.65 16 28 H 0.09 2.30 6.07 -2.39 -0.01 2.28 16 29 H 0.10 2.20 8.04 -2.39 -0.02 2.18 16 30 H 0.06 1.97 6.67 -2.39 -0.02 1.96 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.04 1.21 8.09 -2.39 -0.02 1.19 16 33 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.32 15.06 4.27 -89.70 -0.38 14.67 16 35 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 36 H 0.03 1.45 7.08 -2.39 -0.02 1.43 16 37 H 0.05 2.41 7.49 -2.39 -0.02 2.39 16 Total: -1.00 -64.20 276.79 -0.10 -64.30 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.52 Total: 23.30 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 4.17 Total: -18.97 kcal Atomic # 7 Polarization: -108.31 SS G_CDS: -6.48 Total: -114.79 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.69 Total: 46.15 kcal Total: -64.20 -0.10 -64.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219418384.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.663 kcal (2) G-P(sol) polarization free energy of solvation -64.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds