Wall clock time and date at job start Mon Mar 30 2020 03:19:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31001 * 1
3 3 C 1.50699 * 119.99846 * 2 1
4 4 N 1.46906 * 109.47140 * 124.99973 * 3 2 1
5 5 C 1.48070 * 110.99795 * 66.04724 * 4 3 2
6 6 C 1.50741 * 112.93896 * 84.35214 * 5 4 3
7 7 C 1.54520 * 108.93935 * 92.65271 * 6 5 4
8 8 H 1.09000 * 109.06927 * 44.43774 * 7 6 5
9 9 C 1.53004 * 109.07029 * 163.46160 * 7 6 5
10 10 N 1.40085 * 111.51042 * 283.98283 * 7 6 5
11 11 C 1.47685 * 114.56675 * 61.45111 * 10 7 6
12 12 H 1.08997 * 109.73677 * 38.34155 * 11 10 7
13 13 C 1.50700 * 109.73664 * 159.04014 * 11 10 7
14 14 H 1.07990 * 120.00220 * 119.99799 * 13 11 10
15 15 C 1.37876 * 119.99593 * 300.00083 * 13 11 10
16 16 N 1.31522 * 119.99958 * 179.97438 * 15 13 11
17 17 Si 1.86801 * 120.00227 * 359.97438 * 15 13 11
18 18 H 1.48500 * 109.47102 * 90.00331 * 17 15 13
19 19 H 1.48498 * 109.47189 * 210.00336 * 17 15 13
20 20 H 1.48500 * 109.47034 * 330.00038 * 17 15 13
21 21 C 1.47751 * 110.99953 * 193.64521 * 4 3 2
22 22 H 1.08001 * 120.00021 * 359.97438 * 1 2 3
23 23 H 1.07998 * 119.99970 * 180.02562 * 1 2 3
24 24 H 1.07994 * 120.00398 * 180.02562 * 2 1 3
25 25 H 1.09004 * 109.47103 * 5.00074 * 3 2 1
26 26 H 1.09000 * 109.47247 * 244.99952 * 3 2 1
27 27 H 1.08994 * 108.78621 * 205.24309 * 5 4 3
28 28 H 1.08998 * 108.78891 * 323.57250 * 5 4 3
29 29 H 1.09003 * 109.55720 * 212.48881 * 6 5 4
30 30 H 1.08997 * 109.56364 * 332.70540 * 6 5 4
31 31 H 1.08999 * 109.47056 * 60.00100 * 9 7 6
32 32 H 1.08999 * 109.46967 * 180.02562 * 9 7 6
33 33 H 1.09006 * 109.47067 * 299.99689 * 9 7 6
34 34 H 1.00895 * 110.99792 * 188.14412 * 10 7 6
35 35 H 0.96998 * 120.00067 * 180.02562 * 16 15 13
36 36 H 1.09002 * 108.99363 * 313.43815 * 21 4 3
37 37 H 1.08995 * 108.99302 * 72.18543 * 21 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 7 2.9963 1.3320 1.1346
5 6 4.0578 0.3124 0.9730
6 6 5.2076 0.7909 0.1237
7 6 6.2909 1.3988 1.0427
8 1 6.4374 0.7442 1.9019
9 6 7.6045 1.5042 0.2651
10 7 5.9241 2.6724 1.4963
11 6 4.6892 2.7037 2.3057
12 1 4.6494 1.8259 2.9506
13 6 4.6627 3.9548 3.1455
14 1 3.8595 4.6670 3.0281
15 6 5.6641 4.1901 4.0635
16 7 5.6414 5.2822 4.7961
17 14 7.0532 2.9578 4.2669
18 1 8.1615 3.3040 3.3412
19 1 7.5475 2.9956 5.6667
20 1 6.5549 1.5942 3.9547
21 6 3.5116 2.6976 1.3641
22 1 -0.5400 0.9353 0.0004
23 1 -0.5400 -0.9353 0.0004
24 1 1.8500 -0.9352 -0.0004
25 1 1.3585 2.1317 0.0896
26 1 2.6213 1.4026 -0.9314
27 1 4.4377 0.0421 1.9581
28 1 3.6255 -0.5739 0.5086
29 1 5.6276 -0.0496 -0.4290
30 1 4.8541 1.5478 -0.5764
31 1 7.4609 2.1439 -0.6057
32 1 8.3738 1.9321 0.9079
33 1 7.9146 0.5113 -0.0605
34 1 6.6876 3.1162 1.9843
35 1 6.3460 5.4479 5.4417
36 1 3.8181 3.1262 0.4099
37 1 2.7158 3.3105 1.7873
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000219418384.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:40
Heat of formation + Delta-G solvation = 15.359349 kcal
Electronic energy + Delta-G solvation = -16403.066669 eV
Core-core repulsion = 13987.193634 eV
Total energy + Delta-G solvation = -2415.873035 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 224.158 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.67774 -37.37004 -35.34353 -34.16676 -33.24015 -30.00072 -28.77117 -27.30070
-25.62218 -23.63249 -21.52484 -20.83647 -20.10475 -19.08506 -17.91465 -16.74168
-16.48589 -16.08591 -15.84875 -15.52624 -15.05396 -14.81746 -14.00544 -13.76396
-13.62775 -13.31316 -13.26689 -12.82486 -12.78768 -12.49941 -12.46639 -12.26598
-11.93825 -11.72736 -11.50118 -11.33861 -11.23087 -10.85762 -10.28983 -9.14622
-9.02846 -8.38592 -6.44629 1.16407 1.24632 1.32139 1.43165 2.18306
2.86760 3.15031 3.51626 3.82407 3.94952 4.02898 4.25708 4.31527
4.36698 4.52113 4.56455 4.65067 4.67078 4.74711 4.81617 4.86779
4.93598 5.00990 5.08259 5.09914 5.18159 5.32907 5.39912 5.51000
5.76259 5.93635 6.09583 6.23861 6.30919 6.52861 6.57009 6.90205
7.19712 8.77056
Molecular weight = 224.16amu
Principal moments of inertia in cm(-1)
A = 0.029408 B = 0.009646 C = 0.007893
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 951.904381 B = 2902.124905 C = 3546.749439
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.153 4.153
3 C 0.083 3.917
4 N -0.556 5.556
5 C 0.054 3.946
6 C -0.129 4.129
7 C 0.082 3.918
8 H 0.002 0.998
9 C -0.143 4.143
10 N -0.703 5.703
11 C 0.200 3.800
12 H 0.000 1.000
13 C -0.516 4.516
14 H 0.043 0.957
15 C 0.022 3.978
16 N -0.936 5.936
17 Si 0.932 3.068
18 H -0.256 1.256
19 H -0.289 1.289
20 H -0.260 1.260
21 C 0.095 3.905
22 H 0.096 0.904
23 H 0.115 0.885
24 H 0.116 0.884
25 H 0.069 0.931
26 H 0.044 0.956
27 H 0.047 0.953
28 H 0.093 0.907
29 H 0.098 0.902
30 H 0.063 0.937
31 H 0.065 0.935
32 H 0.039 0.961
33 H 0.084 0.916
34 H 0.324 0.676
35 H 0.269 0.731
36 H 0.034 0.966
37 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.793 -12.888 -11.298 17.232
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C -0.171 4.171
3 C -0.044 4.044
4 N -0.281 5.281
5 C -0.073 4.073
6 C -0.168 4.168
7 C -0.029 4.029
8 H 0.020 0.980
9 C -0.200 4.200
10 N -0.342 5.342
11 C 0.094 3.906
12 H 0.018 0.982
13 C -0.556 4.556
14 H 0.062 0.938
15 C -0.177 4.177
16 N -0.576 5.576
17 Si 0.758 3.242
18 H -0.181 1.181
19 H -0.215 1.215
20 H -0.184 1.184
21 C -0.032 4.032
22 H 0.114 0.886
23 H 0.133 0.867
24 H 0.134 0.866
25 H 0.088 0.912
26 H 0.062 0.938
27 H 0.065 0.935
28 H 0.111 0.889
29 H 0.116 0.884
30 H 0.081 0.919
31 H 0.084 0.916
32 H 0.059 0.941
33 H 0.103 0.897
34 H 0.148 0.852
35 H 0.078 0.922
36 H 0.052 0.948
37 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -2.281 -12.789 -11.308 17.223
hybrid contribution 1.411 0.115 0.815 1.634
sum -0.870 -12.675 -10.493 16.478
Atomic orbital electron populations
1.23966 0.95514 1.02623 0.99919 1.22870 0.96269 0.97536 1.00452
1.21196 0.94779 0.96810 0.91653 1.62183 1.18468 1.06108 1.41342
1.21995 0.91145 0.95004 0.99201 1.22001 0.95785 1.01002 0.98001
1.20693 0.96356 0.89867 0.95991 0.98045 1.21929 0.94855 1.02972
1.00261 1.58244 1.07498 1.21432 1.46982 1.18991 0.87339 0.94484
0.89809 0.98229 1.21330 1.09542 1.05875 1.18807 0.93846 1.25793
1.00306 0.96764 0.94842 1.70012 1.35222 1.27378 1.24950 0.86075
0.80182 0.80331 0.77628 1.18082 1.21538 1.18424 1.21600 0.95826
0.88133 0.97671 0.88593 0.86694 0.86582 0.91224 0.93813 0.93470
0.88918 0.88381 0.91874 0.91589 0.94135 0.89748 0.85168 0.92174
0.94753 0.92930
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.71 14.32 67.78 0.97 -2.74 16
2 C -0.15 -3.56 9.16 25.65 0.23 -3.32 16
3 C 0.08 2.34 5.31 85.56 0.45 2.79 16
4 N -0.56 -19.55 4.72 -904.11 -4.27 -23.82 16
5 C 0.05 1.67 5.00 85.34 0.43 2.10 16
6 C -0.13 -3.77 4.94 30.38 0.15 -3.62 16
7 C 0.08 2.91 2.44 46.66 0.11 3.02 16
8 H 0.00 0.07 6.93 -2.39 -0.02 0.06 16
9 C -0.14 -4.09 9.24 71.98 0.67 -3.42 16
10 N -0.70 -30.63 5.16 -486.41 -2.51 -33.14 16
11 C 0.20 9.68 1.54 43.30 0.07 9.75 16
12 H 0.00 0.01 5.89 -2.39 -0.01 0.00 16
13 C -0.52 -29.95 9.19 25.60 0.24 -29.72 16
14 H 0.04 2.77 7.70 -2.92 -0.02 2.75 16
15 C 0.02 1.30 5.40 84.65 0.46 1.75 16
16 N -0.94 -58.12 13.96 21.45 0.30 -57.82 16
17 Si 0.93 44.46 24.64 68.60 1.69 46.15 16
18 H -0.26 -11.32 6.92 99.48 0.69 -10.63 16
19 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16
20 H -0.26 -12.05 5.90 99.48 0.59 -11.46 16
21 C 0.10 4.05 4.59 85.42 0.39 4.44 16
22 H 0.10 1.93 7.84 -2.91 -0.02 1.90 16
23 H 0.11 1.86 8.06 -2.91 -0.02 1.83 16
24 H 0.12 2.42 6.74 -2.91 -0.02 2.40 16
25 H 0.07 2.01 7.68 -2.38 -0.02 1.99 16
26 H 0.04 1.18 7.60 -2.39 -0.02 1.16 16
27 H 0.05 1.67 6.52 -2.39 -0.02 1.65 16
28 H 0.09 2.30 6.07 -2.39 -0.01 2.28 16
29 H 0.10 2.20 8.04 -2.39 -0.02 2.18 16
30 H 0.06 1.97 6.67 -2.39 -0.02 1.96 16
31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16
32 H 0.04 1.21 8.09 -2.39 -0.02 1.19 16
33 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16
34 H 0.32 15.06 4.27 -89.70 -0.38 14.67 16
35 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16
36 H 0.03 1.45 7.08 -2.39 -0.02 1.43 16
37 H 0.05 2.41 7.49 -2.39 -0.02 2.39 16
Total: -1.00 -64.20 276.79 -0.10 -64.30
By element:
Atomic # 1 Polarization: 22.78 SS G_CDS: 0.52 Total: 23.30 kcal
Atomic # 6 Polarization: -23.13 SS G_CDS: 4.17 Total: -18.97 kcal
Atomic # 7 Polarization: -108.31 SS G_CDS: -6.48 Total: -114.79 kcal
Atomic # 14 Polarization: 44.46 SS G_CDS: 1.69 Total: 46.15 kcal
Total: -64.20 -0.10 -64.30 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000219418384.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.663 kcal
(2) G-P(sol) polarization free energy of solvation -64.199 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.464 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.105 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.304 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.359 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds