Wall clock time and date at job start Mon Mar 30 2020 03:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50698 * 119.99801 * 2 1 4 4 N 1.46905 * 109.46669 * 125.00941 * 3 2 1 5 5 C 1.40087 * 110.99444 * 293.94726 * 4 3 2 6 6 C 1.54519 * 111.50163 * 188.14850 * 5 4 3 7 7 C 1.50745 * 109.03781 * 283.94474 * 6 5 4 8 8 H 1.08998 * 108.78963 * 331.81290 * 7 6 5 9 9 C 1.52995 * 108.78987 * 213.59749 * 7 6 5 10 10 N 1.48183 * 112.87278 * 92.52857 * 7 6 5 11 11 C 1.47744 * 113.86218 * 318.44912 * 10 7 6 12 12 H 1.09001 * 108.92624 * 79.40212 * 11 10 7 13 13 C 1.50704 * 108.98993 * 198.18523 * 11 10 7 14 14 H 1.08003 * 119.99736 * 122.40691 * 13 11 10 15 15 C 1.37873 * 120.00529 * 302.40014 * 13 11 10 16 16 N 1.31513 * 120.00189 * 180.02562 * 15 13 11 17 17 Si 1.86798 * 119.99758 * 0.02562 * 15 13 11 18 18 H 1.48504 * 109.47012 * 89.99827 * 17 15 13 19 19 H 1.48501 * 109.47163 * 209.99713 * 17 15 13 20 20 H 1.48499 * 109.47337 * 329.99942 * 17 15 13 21 21 C 1.47683 * 111.00313 * 62.59503 * 4 3 2 22 22 H 1.07996 * 119.99870 * 180.02562 * 1 2 3 23 23 H 1.08000 * 119.99872 * 359.97438 * 1 2 3 24 24 H 1.07993 * 119.99673 * 180.02562 * 2 1 3 25 25 H 1.08996 * 109.47489 * 5.00345 * 3 2 1 26 26 H 1.09002 * 109.47034 * 245.00102 * 3 2 1 27 27 H 1.09004 * 109.07026 * 67.63135 * 5 4 3 28 28 H 1.08992 * 109.08001 * 308.67178 * 5 4 3 29 29 H 1.09002 * 109.55839 * 43.84208 * 6 5 4 30 30 H 1.08997 * 109.55847 * 164.05316 * 6 5 4 31 31 H 1.08997 * 109.47251 * 60.00626 * 9 7 6 32 32 H 1.09006 * 109.46941 * 180.02562 * 9 7 6 33 33 H 1.08996 * 109.47018 * 299.99867 * 9 7 6 34 34 H 1.00900 * 110.91123 * 84.49872 * 10 7 6 35 35 H 0.97005 * 120.00111 * 180.02562 * 16 15 13 36 36 H 1.09005 * 109.73401 * 271.62724 * 21 4 3 37 37 H 1.08995 * 109.73445 * 32.32795 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9965 1.3318 1.1345 5 6 2.3050 1.3462 2.3527 6 6 3.2614 1.5778 3.5440 7 6 4.0136 0.3023 3.8259 8 1 3.3991 -0.5433 3.5171 9 6 4.2648 0.2008 5.3317 10 7 5.3119 0.2302 3.1153 11 6 5.2581 0.7169 1.7213 12 1 5.2864 1.8065 1.7259 13 6 6.4599 0.1987 0.9742 14 1 6.3263 -0.3965 0.0829 15 6 7.7300 0.4845 1.4283 16 7 8.7787 0.0326 0.7759 17 14 7.9610 1.5135 2.9701 18 1 8.0055 0.6228 4.1575 19 1 9.2338 2.2724 2.8726 20 1 6.8276 2.4632 3.1059 21 6 4.0068 0.2614 1.0142 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3586 2.1316 0.0896 26 1 2.6213 1.4026 -0.9314 27 1 1.7963 0.3912 2.4848 28 1 1.5626 2.1439 2.3316 29 1 3.9672 2.3707 3.2965 30 1 2.6854 1.8638 4.4241 31 1 3.3111 0.1914 5.8593 32 1 4.8092 -0.7185 5.5481 33 1 4.8535 1.0572 5.6604 34 1 6.0344 0.7044 3.6361 35 1 9.6723 0.2334 1.0956 36 1 3.6331 -0.6513 1.4786 37 1 4.2246 0.0773 -0.0378 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219418442.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:42 Heat of formation + Delta-G solvation = 40.106858 kcal Electronic energy + Delta-G solvation = -16477.018094 eV Core-core repulsion = 14062.218192 eV Total energy + Delta-G solvation = -2414.799902 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.33994 -36.03836 -33.41544 -32.81414 -31.31192 -28.55726 -27.14411 -25.45515 -24.47574 -21.59262 -20.71326 -19.74846 -18.70577 -16.74166 -15.86761 -15.22315 -15.18331 -14.79499 -14.11539 -14.01081 -13.53591 -13.05841 -12.63515 -12.53557 -12.24416 -11.93727 -11.66494 -11.53003 -11.14702 -11.05652 -10.79843 -10.51885 -10.37589 -10.08737 -10.04930 -9.48504 -9.37598 -9.26080 -8.55675 -7.73029 -7.21926 -6.04449 -4.03056 2.31106 3.30867 3.31842 3.37572 4.42020 4.46665 4.88209 4.97733 5.19173 5.23357 5.31224 5.46679 5.53999 5.67446 5.76280 5.86209 5.89998 6.01839 6.04778 6.06768 6.17150 6.23821 6.32140 6.45178 6.48445 6.63942 6.71209 6.75792 6.77822 7.12170 7.60643 7.70246 7.82811 8.27581 8.39995 8.55139 8.98829 9.59308 11.08847 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.028418 B = 0.010226 C = 0.008244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.059900 B = 2737.445352 C = 3395.462182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.178 4.178 3 C 0.085 3.915 4 N -0.553 5.553 5 C 0.082 3.918 6 C -0.147 4.147 7 C 0.076 3.924 8 H 0.067 0.933 9 C -0.151 4.151 10 N -0.686 5.686 11 C 0.185 3.815 12 H 0.015 0.985 13 C -0.495 4.495 14 H 0.076 0.924 15 C 0.078 3.922 16 N -0.899 5.899 17 Si 0.881 3.119 18 H -0.273 1.273 19 H -0.295 1.295 20 H -0.272 1.272 21 C 0.086 3.914 22 H 0.092 0.908 23 H 0.093 0.907 24 H 0.108 0.892 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.018 0.982 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.316 0.684 35 H 0.263 0.737 36 H 0.038 0.962 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.814 2.440 3.832 14.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.198 4.198 3 C -0.042 4.042 4 N -0.276 5.276 5 C -0.048 4.048 6 C -0.187 4.187 7 C -0.034 4.034 8 H 0.085 0.915 9 C -0.209 4.209 10 N -0.325 5.325 11 C 0.079 3.921 12 H 0.032 0.968 13 C -0.534 4.534 14 H 0.094 0.906 15 C -0.125 4.125 16 N -0.538 5.538 17 Si 0.712 3.288 18 H -0.199 1.199 19 H -0.223 1.223 20 H -0.198 1.198 21 C -0.040 4.040 22 H 0.110 0.890 23 H 0.112 0.888 24 H 0.126 0.874 25 H 0.089 0.911 26 H 0.103 0.897 27 H 0.036 0.964 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.138 0.862 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.451 2.231 3.641 14.112 hybrid contribution -0.241 0.623 1.134 1.316 sum -13.692 2.854 4.774 14.779 Atomic orbital electron populations 1.23762 0.95890 1.01348 1.02390 1.23882 0.96668 1.00687 0.98554 1.21381 0.94132 0.93467 0.95230 1.59373 1.16383 1.49979 1.01820 1.20904 0.95084 0.99025 0.89793 1.22233 0.99239 1.00165 0.97078 1.21455 0.92842 0.95923 0.93147 0.91490 1.22009 1.01011 1.01946 0.95938 1.61564 1.03397 1.63469 1.04038 1.19357 0.93917 0.94608 0.84206 0.96773 1.21069 0.88594 1.33493 1.10277 0.90558 1.24951 0.96038 0.95258 0.96236 1.69892 0.98231 1.45825 1.39834 0.86913 0.76786 0.80525 0.84568 1.19933 1.22286 1.19791 1.21896 0.90717 0.90232 1.01146 0.89011 0.88839 0.87354 0.91088 0.89701 0.96396 0.92303 0.91112 0.91816 0.92740 0.92053 0.93442 0.86162 0.92692 0.94420 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.24 14.32 29.01 0.42 -1.83 16 2 C -0.18 -2.39 8.00 -36.03 -0.29 -2.68 16 3 C 0.09 1.23 5.61 -4.97 -0.03 1.20 16 4 N -0.55 -9.69 4.16 -241.15 -1.00 -10.70 16 5 C 0.08 1.30 4.66 -6.55 -0.03 1.27 16 6 C -0.15 -2.46 5.18 -27.06 -0.14 -2.60 16 7 C 0.08 1.39 2.66 -68.14 -0.18 1.21 16 8 H 0.07 1.24 6.53 -51.93 -0.34 0.90 16 9 C -0.15 -2.37 8.94 37.15 0.33 -2.04 16 10 N -0.69 -15.62 6.01 -101.81 -0.61 -16.23 16 11 C 0.19 4.45 1.58 -69.52 -0.11 4.34 16 12 H 0.01 0.38 6.31 -51.93 -0.33 0.05 16 13 C -0.50 -14.02 9.21 -34.44 -0.32 -14.34 16 14 H 0.08 2.30 7.68 -52.48 -0.40 1.90 16 15 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 16 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 17 Si 0.88 22.10 24.48 -169.99 -4.16 17.94 16 18 H -0.27 -6.66 7.06 56.52 0.40 -6.27 16 19 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 20 H -0.27 -6.60 6.48 56.52 0.37 -6.23 16 21 C 0.09 1.76 3.90 -4.51 -0.02 1.74 16 22 H 0.09 0.95 8.06 -52.49 -0.42 0.53 16 23 H 0.09 0.96 7.84 -52.49 -0.41 0.55 16 24 H 0.11 1.55 7.57 -52.49 -0.40 1.16 16 25 H 0.07 0.91 7.59 -51.93 -0.39 0.52 16 26 H 0.08 1.23 8.01 -51.93 -0.42 0.82 16 27 H 0.02 0.29 6.84 -51.93 -0.36 -0.07 16 28 H 0.06 0.84 7.88 -51.93 -0.41 0.43 16 29 H 0.07 1.35 7.19 -51.93 -0.37 0.98 16 30 H 0.06 0.90 7.68 -51.93 -0.40 0.50 16 31 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.32 7.41 3.73 -39.29 -0.15 7.27 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.04 0.77 6.66 -51.93 -0.35 0.43 16 37 H 0.08 1.66 7.10 -51.93 -0.37 1.29 16 LS Contribution 278.12 15.07 4.19 4.19 Total: -1.00 -29.84 278.12 -7.22 -37.06 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -5.95 Total: 6.16 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -0.46 Total: -11.55 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: -0.84 Total: -53.80 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.16 Total: 17.94 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.84 -7.22 -37.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219418442.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.168 kcal (2) G-P(sol) polarization free energy of solvation -29.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds