Wall clock time and date at job start Mon Mar 30 2020 03:19:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31007 * 1
3 3 C 1.50698 * 119.99801 * 2 1
4 4 N 1.46905 * 109.46669 * 125.00941 * 3 2 1
5 5 C 1.40087 * 110.99444 * 293.94726 * 4 3 2
6 6 C 1.54519 * 111.50163 * 188.14850 * 5 4 3
7 7 C 1.50745 * 109.03781 * 283.94474 * 6 5 4
8 8 H 1.08998 * 108.78963 * 331.81290 * 7 6 5
9 9 C 1.52995 * 108.78987 * 213.59749 * 7 6 5
10 10 N 1.48183 * 112.87278 * 92.52857 * 7 6 5
11 11 C 1.47744 * 113.86218 * 318.44912 * 10 7 6
12 12 H 1.09001 * 108.92624 * 79.40212 * 11 10 7
13 13 C 1.50704 * 108.98993 * 198.18523 * 11 10 7
14 14 H 1.08003 * 119.99736 * 122.40691 * 13 11 10
15 15 C 1.37873 * 120.00529 * 302.40014 * 13 11 10
16 16 N 1.31513 * 120.00189 * 180.02562 * 15 13 11
17 17 Si 1.86798 * 119.99758 * 0.02562 * 15 13 11
18 18 H 1.48504 * 109.47012 * 89.99827 * 17 15 13
19 19 H 1.48501 * 109.47163 * 209.99713 * 17 15 13
20 20 H 1.48499 * 109.47337 * 329.99942 * 17 15 13
21 21 C 1.47683 * 111.00313 * 62.59503 * 4 3 2
22 22 H 1.07996 * 119.99870 * 180.02562 * 1 2 3
23 23 H 1.08000 * 119.99872 * 359.97438 * 1 2 3
24 24 H 1.07993 * 119.99673 * 180.02562 * 2 1 3
25 25 H 1.08996 * 109.47489 * 5.00345 * 3 2 1
26 26 H 1.09002 * 109.47034 * 245.00102 * 3 2 1
27 27 H 1.09004 * 109.07026 * 67.63135 * 5 4 3
28 28 H 1.08992 * 109.08001 * 308.67178 * 5 4 3
29 29 H 1.09002 * 109.55839 * 43.84208 * 6 5 4
30 30 H 1.08997 * 109.55847 * 164.05316 * 6 5 4
31 31 H 1.08997 * 109.47251 * 60.00626 * 9 7 6
32 32 H 1.09006 * 109.46941 * 180.02562 * 9 7 6
33 33 H 1.08996 * 109.47018 * 299.99867 * 9 7 6
34 34 H 1.00900 * 110.91123 * 84.49872 * 10 7 6
35 35 H 0.97005 * 120.00111 * 180.02562 * 16 15 13
36 36 H 1.09005 * 109.73401 * 271.62724 * 21 4 3
37 37 H 1.08995 * 109.73445 * 32.32795 * 21 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3101 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 7 2.9965 1.3318 1.1345
5 6 2.3050 1.3462 2.3527
6 6 3.2614 1.5778 3.5440
7 6 4.0136 0.3023 3.8259
8 1 3.3991 -0.5433 3.5171
9 6 4.2648 0.2008 5.3317
10 7 5.3119 0.2302 3.1153
11 6 5.2581 0.7169 1.7213
12 1 5.2864 1.8065 1.7259
13 6 6.4599 0.1987 0.9742
14 1 6.3263 -0.3965 0.0829
15 6 7.7300 0.4845 1.4283
16 7 8.7787 0.0326 0.7759
17 14 7.9610 1.5135 2.9701
18 1 8.0055 0.6228 4.1575
19 1 9.2338 2.2724 2.8726
20 1 6.8276 2.4632 3.1059
21 6 4.0068 0.2614 1.0142
22 1 -0.5400 -0.9353 0.0004
23 1 -0.5400 0.9353 0.0004
24 1 1.8500 -0.9353 -0.0004
25 1 1.3586 2.1316 0.0896
26 1 2.6213 1.4026 -0.9314
27 1 1.7963 0.3912 2.4848
28 1 1.5626 2.1439 2.3316
29 1 3.9672 2.3707 3.2965
30 1 2.6854 1.8638 4.4241
31 1 3.3111 0.1914 5.8593
32 1 4.8092 -0.7185 5.5481
33 1 4.8535 1.0572 5.6604
34 1 6.0344 0.7044 3.6361
35 1 9.6723 0.2334 1.0956
36 1 3.6331 -0.6513 1.4786
37 1 4.2246 0.0773 -0.0378
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000219418442.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:42
Heat of formation + Delta-G solvation = 40.106858 kcal
Electronic energy + Delta-G solvation = -16477.018094 eV
Core-core repulsion = 14062.218192 eV
Total energy + Delta-G solvation = -2414.799902 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 224.158 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-39.33994 -36.03836 -33.41544 -32.81414 -31.31192 -28.55726 -27.14411 -25.45515
-24.47574 -21.59262 -20.71326 -19.74846 -18.70577 -16.74166 -15.86761 -15.22315
-15.18331 -14.79499 -14.11539 -14.01081 -13.53591 -13.05841 -12.63515 -12.53557
-12.24416 -11.93727 -11.66494 -11.53003 -11.14702 -11.05652 -10.79843 -10.51885
-10.37589 -10.08737 -10.04930 -9.48504 -9.37598 -9.26080 -8.55675 -7.73029
-7.21926 -6.04449 -4.03056 2.31106 3.30867 3.31842 3.37572 4.42020
4.46665 4.88209 4.97733 5.19173 5.23357 5.31224 5.46679 5.53999
5.67446 5.76280 5.86209 5.89998 6.01839 6.04778 6.06768 6.17150
6.23821 6.32140 6.45178 6.48445 6.63942 6.71209 6.75792 6.77822
7.12170 7.60643 7.70246 7.82811 8.27581 8.39995 8.55139 8.98829
9.59308 11.08847
Molecular weight = 224.16amu
Principal moments of inertia in cm(-1)
A = 0.028418 B = 0.010226 C = 0.008244
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 985.059900 B = 2737.445352 C = 3395.462182
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.178 4.178
3 C 0.085 3.915
4 N -0.553 5.553
5 C 0.082 3.918
6 C -0.147 4.147
7 C 0.076 3.924
8 H 0.067 0.933
9 C -0.151 4.151
10 N -0.686 5.686
11 C 0.185 3.815
12 H 0.015 0.985
13 C -0.495 4.495
14 H 0.076 0.924
15 C 0.078 3.922
16 N -0.899 5.899
17 Si 0.881 3.119
18 H -0.273 1.273
19 H -0.295 1.295
20 H -0.272 1.272
21 C 0.086 3.914
22 H 0.092 0.908
23 H 0.093 0.907
24 H 0.108 0.892
25 H 0.071 0.929
26 H 0.085 0.915
27 H 0.018 0.982
28 H 0.059 0.941
29 H 0.070 0.930
30 H 0.063 0.937
31 H 0.054 0.946
32 H 0.060 0.940
33 H 0.046 0.954
34 H 0.316 0.684
35 H 0.263 0.737
36 H 0.038 0.962
37 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.814 2.440 3.832 14.541
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.234 4.234
2 C -0.198 4.198
3 C -0.042 4.042
4 N -0.276 5.276
5 C -0.048 4.048
6 C -0.187 4.187
7 C -0.034 4.034
8 H 0.085 0.915
9 C -0.209 4.209
10 N -0.325 5.325
11 C 0.079 3.921
12 H 0.032 0.968
13 C -0.534 4.534
14 H 0.094 0.906
15 C -0.125 4.125
16 N -0.538 5.538
17 Si 0.712 3.288
18 H -0.199 1.199
19 H -0.223 1.223
20 H -0.198 1.198
21 C -0.040 4.040
22 H 0.110 0.890
23 H 0.112 0.888
24 H 0.126 0.874
25 H 0.089 0.911
26 H 0.103 0.897
27 H 0.036 0.964
28 H 0.077 0.923
29 H 0.089 0.911
30 H 0.082 0.918
31 H 0.073 0.927
32 H 0.079 0.921
33 H 0.066 0.934
34 H 0.138 0.862
35 H 0.073 0.927
36 H 0.056 0.944
37 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -13.451 2.231 3.641 14.112
hybrid contribution -0.241 0.623 1.134 1.316
sum -13.692 2.854 4.774 14.779
Atomic orbital electron populations
1.23762 0.95890 1.01348 1.02390 1.23882 0.96668 1.00687 0.98554
1.21381 0.94132 0.93467 0.95230 1.59373 1.16383 1.49979 1.01820
1.20904 0.95084 0.99025 0.89793 1.22233 0.99239 1.00165 0.97078
1.21455 0.92842 0.95923 0.93147 0.91490 1.22009 1.01011 1.01946
0.95938 1.61564 1.03397 1.63469 1.04038 1.19357 0.93917 0.94608
0.84206 0.96773 1.21069 0.88594 1.33493 1.10277 0.90558 1.24951
0.96038 0.95258 0.96236 1.69892 0.98231 1.45825 1.39834 0.86913
0.76786 0.80525 0.84568 1.19933 1.22286 1.19791 1.21896 0.90717
0.90232 1.01146 0.89011 0.88839 0.87354 0.91088 0.89701 0.96396
0.92303 0.91112 0.91816 0.92740 0.92053 0.93442 0.86162 0.92692
0.94420 0.90267
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -2.24 14.32 29.01 0.42 -1.83 16
2 C -0.18 -2.39 8.00 -36.03 -0.29 -2.68 16
3 C 0.09 1.23 5.61 -4.97 -0.03 1.20 16
4 N -0.55 -9.69 4.16 -241.15 -1.00 -10.70 16
5 C 0.08 1.30 4.66 -6.55 -0.03 1.27 16
6 C -0.15 -2.46 5.18 -27.06 -0.14 -2.60 16
7 C 0.08 1.39 2.66 -68.14 -0.18 1.21 16
8 H 0.07 1.24 6.53 -51.93 -0.34 0.90 16
9 C -0.15 -2.37 8.94 37.15 0.33 -2.04 16
10 N -0.69 -15.62 6.01 -101.81 -0.61 -16.23 16
11 C 0.19 4.45 1.58 -69.52 -0.11 4.34 16
12 H 0.01 0.38 6.31 -51.93 -0.33 0.05 16
13 C -0.50 -14.02 9.21 -34.44 -0.32 -14.34 16
14 H 0.08 2.30 7.68 -52.48 -0.40 1.90 16
15 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16
16 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16
17 Si 0.88 22.10 24.48 -169.99 -4.16 17.94 16
18 H -0.27 -6.66 7.06 56.52 0.40 -6.27 16
19 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16
20 H -0.27 -6.60 6.48 56.52 0.37 -6.23 16
21 C 0.09 1.76 3.90 -4.51 -0.02 1.74 16
22 H 0.09 0.95 8.06 -52.49 -0.42 0.53 16
23 H 0.09 0.96 7.84 -52.49 -0.41 0.55 16
24 H 0.11 1.55 7.57 -52.49 -0.40 1.16 16
25 H 0.07 0.91 7.59 -51.93 -0.39 0.52 16
26 H 0.08 1.23 8.01 -51.93 -0.42 0.82 16
27 H 0.02 0.29 6.84 -51.93 -0.36 -0.07 16
28 H 0.06 0.84 7.88 -51.93 -0.41 0.43 16
29 H 0.07 1.35 7.19 -51.93 -0.37 0.98 16
30 H 0.06 0.90 7.68 -51.93 -0.40 0.50 16
31 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16
32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16
33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16
34 H 0.32 7.41 3.73 -39.29 -0.15 7.27 16
35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16
36 H 0.04 0.77 6.66 -51.93 -0.35 0.43 16
37 H 0.08 1.66 7.10 -51.93 -0.37 1.29 16
LS Contribution 278.12 15.07 4.19 4.19
Total: -1.00 -29.84 278.12 -7.22 -37.06
By element:
Atomic # 1 Polarization: 12.10 SS G_CDS: -5.95 Total: 6.16 kcal
Atomic # 6 Polarization: -11.09 SS G_CDS: -0.46 Total: -11.55 kcal
Atomic # 7 Polarization: -52.96 SS G_CDS: -0.84 Total: -53.80 kcal
Atomic # 14 Polarization: 22.10 SS G_CDS: -4.16 Total: 17.94 kcal
Total LS contribution 4.19 Total: 4.19 kcal
Total: -29.84 -7.22 -37.06 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000219418442.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.168 kcal
(2) G-P(sol) polarization free energy of solvation -29.841 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.327 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.061 kcal
(6) G-S(sol) free energy of system = (1) + (5) 40.107 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds