Wall clock time and date at job start Mon Mar 30 2020 03:19:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31007 * 1
3 3 C 1.50698 * 119.99801 * 2 1
4 4 N 1.46905 * 109.46669 * 125.00941 * 3 2 1
5 5 C 1.40087 * 110.99444 * 293.94726 * 4 3 2
6 6 C 1.54519 * 111.50163 * 188.14850 * 5 4 3
7 7 C 1.50745 * 109.03781 * 283.94474 * 6 5 4
8 8 H 1.08998 * 108.78963 * 331.81290 * 7 6 5
9 9 C 1.52995 * 108.78987 * 213.59749 * 7 6 5
10 10 N 1.48183 * 112.87278 * 92.52857 * 7 6 5
11 11 C 1.47744 * 113.86218 * 318.44912 * 10 7 6
12 12 H 1.09001 * 108.92624 * 79.40212 * 11 10 7
13 13 C 1.50704 * 108.98993 * 198.18523 * 11 10 7
14 14 H 1.08003 * 119.99736 * 122.40691 * 13 11 10
15 15 C 1.37873 * 120.00529 * 302.40014 * 13 11 10
16 16 N 1.31513 * 120.00189 * 180.02562 * 15 13 11
17 17 Si 1.86798 * 119.99758 * 0.02562 * 15 13 11
18 18 H 1.48504 * 109.47012 * 89.99827 * 17 15 13
19 19 H 1.48501 * 109.47163 * 209.99713 * 17 15 13
20 20 H 1.48499 * 109.47337 * 329.99942 * 17 15 13
21 21 C 1.47683 * 111.00313 * 62.59503 * 4 3 2
22 22 H 1.07996 * 119.99870 * 180.02562 * 1 2 3
23 23 H 1.08000 * 119.99872 * 359.97438 * 1 2 3
24 24 H 1.07993 * 119.99673 * 180.02562 * 2 1 3
25 25 H 1.08996 * 109.47489 * 5.00345 * 3 2 1
26 26 H 1.09002 * 109.47034 * 245.00102 * 3 2 1
27 27 H 1.09004 * 109.07026 * 67.63135 * 5 4 3
28 28 H 1.08992 * 109.08001 * 308.67178 * 5 4 3
29 29 H 1.09002 * 109.55839 * 43.84208 * 6 5 4
30 30 H 1.08997 * 109.55847 * 164.05316 * 6 5 4
31 31 H 1.08997 * 109.47251 * 60.00626 * 9 7 6
32 32 H 1.09006 * 109.46941 * 180.02562 * 9 7 6
33 33 H 1.08996 * 109.47018 * 299.99867 * 9 7 6
34 34 H 1.00900 * 110.91123 * 84.49872 * 10 7 6
35 35 H 0.97005 * 120.00111 * 180.02562 * 16 15 13
36 36 H 1.09005 * 109.73401 * 271.62724 * 21 4 3
37 37 H 1.08995 * 109.73445 * 32.32795 * 21 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3101 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 7 2.9965 1.3318 1.1345
5 6 2.3050 1.3462 2.3527
6 6 3.2614 1.5778 3.5440
7 6 4.0136 0.3023 3.8259
8 1 3.3991 -0.5433 3.5171
9 6 4.2648 0.2008 5.3317
10 7 5.3119 0.2302 3.1153
11 6 5.2581 0.7169 1.7213
12 1 5.2864 1.8065 1.7259
13 6 6.4599 0.1987 0.9742
14 1 6.3263 -0.3965 0.0829
15 6 7.7300 0.4845 1.4283
16 7 8.7787 0.0326 0.7759
17 14 7.9610 1.5135 2.9701
18 1 8.0055 0.6228 4.1575
19 1 9.2338 2.2724 2.8726
20 1 6.8276 2.4632 3.1059
21 6 4.0068 0.2614 1.0142
22 1 -0.5400 -0.9353 0.0004
23 1 -0.5400 0.9353 0.0004
24 1 1.8500 -0.9353 -0.0004
25 1 1.3586 2.1316 0.0896
26 1 2.6213 1.4026 -0.9314
27 1 1.7963 0.3912 2.4848
28 1 1.5626 2.1439 2.3316
29 1 3.9672 2.3707 3.2965
30 1 2.6854 1.8638 4.4241
31 1 3.3111 0.1914 5.8593
32 1 4.8092 -0.7185 5.5481
33 1 4.8535 1.0572 5.6604
34 1 6.0344 0.7044 3.6361
35 1 9.6723 0.2334 1.0956
36 1 3.6331 -0.6513 1.4786
37 1 4.2246 0.0773 -0.0378
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000219418442.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:42
Heat of formation + Delta-G solvation = 17.967578 kcal
Electronic energy + Delta-G solvation = -16477.978125 eV
Core-core repulsion = 14062.218192 eV
Total energy + Delta-G solvation = -2415.759933 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 224.158 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-40.77813 -37.43544 -35.30232 -33.95945 -33.27465 -29.82697 -28.75414 -27.32824
-25.72339 -23.21606 -22.06099 -21.10668 -20.15579 -18.80072 -17.43916 -16.84635
-16.54898 -16.24943 -15.74886 -15.23931 -15.00942 -14.71483 -14.32238 -13.91890
-13.57644 -13.55007 -13.10597 -12.83563 -12.77394 -12.29158 -12.18962 -12.04883
-11.96740 -11.86980 -11.66433 -11.36102 -11.17832 -10.77516 -10.32436 -9.08557
-8.99515 -8.29534 -6.32937 1.26257 1.31997 1.34175 1.37921 2.30496
2.93409 3.14788 3.58222 3.82548 3.99541 4.06457 4.16733 4.24079
4.41978 4.44570 4.57285 4.62613 4.70027 4.74349 4.82103 4.91147
4.92298 5.01257 5.06636 5.12734 5.18494 5.33073 5.41384 5.61536
5.68040 5.78396 6.16266 6.28542 6.44037 6.53194 6.63597 6.81799
7.33936 8.87317
Molecular weight = 224.16amu
Principal moments of inertia in cm(-1)
A = 0.028418 B = 0.010226 C = 0.008244
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 985.059900 B = 2737.445352 C = 3395.462182
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C -0.204 4.204
3 C 0.087 3.913
4 N -0.564 5.564
5 C 0.080 3.920
6 C -0.144 4.144
7 C 0.072 3.928
8 H 0.065 0.935
9 C -0.147 4.147
10 N -0.704 5.704
11 C 0.197 3.803
12 H -0.001 1.001
13 C -0.506 4.506
14 H 0.038 0.962
15 C 0.020 3.980
16 N -0.946 5.946
17 Si 0.947 3.053
18 H -0.259 1.259
19 H -0.294 1.294
20 H -0.260 1.260
21 C 0.101 3.899
22 H 0.105 0.895
23 H 0.113 0.887
24 H 0.090 0.910
25 H 0.095 0.905
26 H 0.073 0.927
27 H 0.023 0.977
28 H 0.085 0.915
29 H 0.046 0.954
30 H 0.099 0.901
31 H 0.089 0.911
32 H 0.053 0.947
33 H 0.048 0.952
34 H 0.311 0.689
35 H 0.265 0.735
36 H 0.034 0.966
37 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.573 3.569 5.870 17.941
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.224 4.224
3 C -0.039 4.039
4 N -0.286 5.286
5 C -0.049 4.049
6 C -0.183 4.183
7 C -0.037 4.037
8 H 0.083 0.917
9 C -0.205 4.205
10 N -0.342 5.342
11 C 0.090 3.910
12 H 0.016 0.984
13 C -0.545 4.545
14 H 0.056 0.944
15 C -0.178 4.178
16 N -0.587 5.587
17 Si 0.774 3.226
18 H -0.185 1.185
19 H -0.221 1.221
20 H -0.185 1.185
21 C -0.026 4.026
22 H 0.123 0.877
23 H 0.131 0.869
24 H 0.108 0.892
25 H 0.114 0.886
26 H 0.092 0.908
27 H 0.041 0.959
28 H 0.103 0.897
29 H 0.065 0.935
30 H 0.117 0.883
31 H 0.107 0.893
32 H 0.072 0.928
33 H 0.067 0.933
34 H 0.133 0.867
35 H 0.074 0.926
36 H 0.052 0.948
37 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -16.250 3.357 5.683 17.539
hybrid contribution 0.504 0.217 0.416 0.689
sum -15.746 3.573 6.099 17.260
Atomic orbital electron populations
1.23995 0.94980 1.02889 0.98608 1.23637 0.97392 0.99333 1.02035
1.21402 0.93921 0.95013 0.93599 1.59282 1.17259 1.48338 1.03767
1.20991 0.95120 1.00182 0.88577 1.22211 0.99072 0.98110 0.98906
1.21586 0.90658 0.96944 0.94516 0.91683 1.21995 1.02896 1.01669
0.93921 1.61295 1.05864 1.63509 1.03539 1.19096 0.93565 0.93208
0.85152 0.98374 1.21396 0.90791 1.32610 1.09741 0.94407 1.25792
0.95648 0.96646 0.99689 1.70042 0.98816 1.47856 1.41991 0.85850
0.76880 0.79140 0.80712 1.18499 1.22116 1.18527 1.21506 0.90590
0.91050 0.99412 0.87714 0.86910 0.89216 0.88647 0.90831 0.95921
0.89677 0.93530 0.88307 0.89269 0.92766 0.93273 0.86746 0.92566
0.94801 0.92033
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.24 14.32 67.77 0.97 -2.27 16
2 C -0.20 -5.14 8.00 25.64 0.21 -4.93 16
3 C 0.09 2.39 5.61 85.56 0.48 2.87 16
4 N -0.56 -19.07 4.16 -916.85 -3.81 -22.88 16
5 C 0.08 2.31 4.66 88.05 0.41 2.72 16
6 C -0.14 -4.34 5.18 30.38 0.16 -4.18 16
7 C 0.07 2.47 2.66 43.93 0.12 2.59 16
8 H 0.07 2.27 6.53 -2.39 -0.02 2.25 16
9 C -0.15 -4.11 8.94 71.98 0.64 -3.47 16
10 N -0.70 -31.59 6.01 -476.03 -2.86 -34.45 16
11 C 0.20 9.61 1.58 43.28 0.07 9.68 16
12 H 0.00 -0.06 6.31 -2.39 -0.02 -0.08 16
13 C -0.51 -29.94 9.21 25.60 0.24 -29.70 16
14 H 0.04 2.44 7.68 -2.91 -0.02 2.42 16
15 C 0.02 1.21 5.47 84.65 0.46 1.67 16
16 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16
17 Si 0.95 46.31 24.48 68.60 1.68 47.99 16
18 H -0.26 -12.04 7.06 99.48 0.70 -11.33 16
19 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16
20 H -0.26 -12.08 6.48 99.48 0.64 -11.44 16
21 C 0.10 4.23 3.90 85.43 0.33 4.56 16
22 H 0.10 1.79 8.06 -2.91 -0.02 1.77 16
23 H 0.11 1.79 7.84 -2.91 -0.02 1.77 16
24 H 0.09 2.58 7.57 -2.91 -0.02 2.55 16
25 H 0.10 2.14 7.59 -2.39 -0.02 2.12 16
26 H 0.07 2.13 8.01 -2.39 -0.02 2.11 16
27 H 0.02 0.65 6.84 -2.39 -0.02 0.63 16
28 H 0.09 2.04 7.88 -2.39 -0.02 2.02 16
29 H 0.05 1.66 7.19 -2.39 -0.02 1.64 16
30 H 0.10 2.30 7.68 -2.39 -0.02 2.28 16
31 H 0.09 1.88 8.08 -2.39 -0.02 1.86 16
32 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16
33 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16
34 H 0.31 14.19 3.73 -89.69 -0.33 13.85 16
35 H 0.27 15.84 8.31 -92.70 -0.77 15.07 16
36 H 0.03 1.41 6.66 -2.38 -0.02 1.40 16
37 H 0.06 2.72 7.10 -2.39 -0.02 2.70 16
Total: -1.00 -66.90 278.12 0.02 -66.88
By element:
Atomic # 1 Polarization: 22.41 SS G_CDS: 0.63 Total: 23.04 kcal
Atomic # 6 Polarization: -24.56 SS G_CDS: 4.08 Total: -20.48 kcal
Atomic # 7 Polarization: -111.06 SS G_CDS: -6.37 Total: -117.43 kcal
Atomic # 14 Polarization: 46.31 SS G_CDS: 1.68 Total: 47.99 kcal
Total: -66.90 0.02 -66.88 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000219418442.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.843 kcal
(2) G-P(sol) polarization free energy of solvation -66.899 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.945 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.023 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.876 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.968 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds