Wall clock time and date at job start Mon Mar 30 2020 03:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50698 * 119.99801 * 2 1 4 4 N 1.46905 * 109.46669 * 125.00941 * 3 2 1 5 5 C 1.40087 * 110.99444 * 293.94726 * 4 3 2 6 6 C 1.54519 * 111.50163 * 188.14850 * 5 4 3 7 7 C 1.50745 * 109.03781 * 283.94474 * 6 5 4 8 8 H 1.08998 * 108.78963 * 331.81290 * 7 6 5 9 9 C 1.52995 * 108.78987 * 213.59749 * 7 6 5 10 10 N 1.48183 * 112.87278 * 92.52857 * 7 6 5 11 11 C 1.47744 * 113.86218 * 318.44912 * 10 7 6 12 12 H 1.09001 * 108.92624 * 79.40212 * 11 10 7 13 13 C 1.50704 * 108.98993 * 198.18523 * 11 10 7 14 14 H 1.08003 * 119.99736 * 122.40691 * 13 11 10 15 15 C 1.37873 * 120.00529 * 302.40014 * 13 11 10 16 16 N 1.31513 * 120.00189 * 180.02562 * 15 13 11 17 17 Si 1.86798 * 119.99758 * 0.02562 * 15 13 11 18 18 H 1.48504 * 109.47012 * 89.99827 * 17 15 13 19 19 H 1.48501 * 109.47163 * 209.99713 * 17 15 13 20 20 H 1.48499 * 109.47337 * 329.99942 * 17 15 13 21 21 C 1.47683 * 111.00313 * 62.59503 * 4 3 2 22 22 H 1.07996 * 119.99870 * 180.02562 * 1 2 3 23 23 H 1.08000 * 119.99872 * 359.97438 * 1 2 3 24 24 H 1.07993 * 119.99673 * 180.02562 * 2 1 3 25 25 H 1.08996 * 109.47489 * 5.00345 * 3 2 1 26 26 H 1.09002 * 109.47034 * 245.00102 * 3 2 1 27 27 H 1.09004 * 109.07026 * 67.63135 * 5 4 3 28 28 H 1.08992 * 109.08001 * 308.67178 * 5 4 3 29 29 H 1.09002 * 109.55839 * 43.84208 * 6 5 4 30 30 H 1.08997 * 109.55847 * 164.05316 * 6 5 4 31 31 H 1.08997 * 109.47251 * 60.00626 * 9 7 6 32 32 H 1.09006 * 109.46941 * 180.02562 * 9 7 6 33 33 H 1.08996 * 109.47018 * 299.99867 * 9 7 6 34 34 H 1.00900 * 110.91123 * 84.49872 * 10 7 6 35 35 H 0.97005 * 120.00111 * 180.02562 * 16 15 13 36 36 H 1.09005 * 109.73401 * 271.62724 * 21 4 3 37 37 H 1.08995 * 109.73445 * 32.32795 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9965 1.3318 1.1345 5 6 2.3050 1.3462 2.3527 6 6 3.2614 1.5778 3.5440 7 6 4.0136 0.3023 3.8259 8 1 3.3991 -0.5433 3.5171 9 6 4.2648 0.2008 5.3317 10 7 5.3119 0.2302 3.1153 11 6 5.2581 0.7169 1.7213 12 1 5.2864 1.8065 1.7259 13 6 6.4599 0.1987 0.9742 14 1 6.3263 -0.3965 0.0829 15 6 7.7300 0.4845 1.4283 16 7 8.7787 0.0326 0.7759 17 14 7.9610 1.5135 2.9701 18 1 8.0055 0.6228 4.1575 19 1 9.2338 2.2724 2.8726 20 1 6.8276 2.4632 3.1059 21 6 4.0068 0.2614 1.0142 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3586 2.1316 0.0896 26 1 2.6213 1.4026 -0.9314 27 1 1.7963 0.3912 2.4848 28 1 1.5626 2.1439 2.3316 29 1 3.9672 2.3707 3.2965 30 1 2.6854 1.8638 4.4241 31 1 3.3111 0.1914 5.8593 32 1 4.8092 -0.7185 5.5481 33 1 4.8535 1.0572 5.6604 34 1 6.0344 0.7044 3.6361 35 1 9.6723 0.2334 1.0956 36 1 3.6331 -0.6513 1.4786 37 1 4.2246 0.0773 -0.0378 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219418442.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:42 Heat of formation + Delta-G solvation = 17.967578 kcal Electronic energy + Delta-G solvation = -16477.978125 eV Core-core repulsion = 14062.218192 eV Total energy + Delta-G solvation = -2415.759933 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.77813 -37.43544 -35.30232 -33.95945 -33.27465 -29.82697 -28.75414 -27.32824 -25.72339 -23.21606 -22.06099 -21.10668 -20.15579 -18.80072 -17.43916 -16.84635 -16.54898 -16.24943 -15.74886 -15.23931 -15.00942 -14.71483 -14.32238 -13.91890 -13.57644 -13.55007 -13.10597 -12.83563 -12.77394 -12.29158 -12.18962 -12.04883 -11.96740 -11.86980 -11.66433 -11.36102 -11.17832 -10.77516 -10.32436 -9.08557 -8.99515 -8.29534 -6.32937 1.26257 1.31997 1.34175 1.37921 2.30496 2.93409 3.14788 3.58222 3.82548 3.99541 4.06457 4.16733 4.24079 4.41978 4.44570 4.57285 4.62613 4.70027 4.74349 4.82103 4.91147 4.92298 5.01257 5.06636 5.12734 5.18494 5.33073 5.41384 5.61536 5.68040 5.78396 6.16266 6.28542 6.44037 6.53194 6.63597 6.81799 7.33936 8.87317 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.028418 B = 0.010226 C = 0.008244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.059900 B = 2737.445352 C = 3395.462182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.204 4.204 3 C 0.087 3.913 4 N -0.564 5.564 5 C 0.080 3.920 6 C -0.144 4.144 7 C 0.072 3.928 8 H 0.065 0.935 9 C -0.147 4.147 10 N -0.704 5.704 11 C 0.197 3.803 12 H -0.001 1.001 13 C -0.506 4.506 14 H 0.038 0.962 15 C 0.020 3.980 16 N -0.946 5.946 17 Si 0.947 3.053 18 H -0.259 1.259 19 H -0.294 1.294 20 H -0.260 1.260 21 C 0.101 3.899 22 H 0.105 0.895 23 H 0.113 0.887 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.073 0.927 27 H 0.023 0.977 28 H 0.085 0.915 29 H 0.046 0.954 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.311 0.689 35 H 0.265 0.735 36 H 0.034 0.966 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.573 3.569 5.870 17.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.224 4.224 3 C -0.039 4.039 4 N -0.286 5.286 5 C -0.049 4.049 6 C -0.183 4.183 7 C -0.037 4.037 8 H 0.083 0.917 9 C -0.205 4.205 10 N -0.342 5.342 11 C 0.090 3.910 12 H 0.016 0.984 13 C -0.545 4.545 14 H 0.056 0.944 15 C -0.178 4.178 16 N -0.587 5.587 17 Si 0.774 3.226 18 H -0.185 1.185 19 H -0.221 1.221 20 H -0.185 1.185 21 C -0.026 4.026 22 H 0.123 0.877 23 H 0.131 0.869 24 H 0.108 0.892 25 H 0.114 0.886 26 H 0.092 0.908 27 H 0.041 0.959 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.117 0.883 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.133 0.867 35 H 0.074 0.926 36 H 0.052 0.948 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.250 3.357 5.683 17.539 hybrid contribution 0.504 0.217 0.416 0.689 sum -15.746 3.573 6.099 17.260 Atomic orbital electron populations 1.23995 0.94980 1.02889 0.98608 1.23637 0.97392 0.99333 1.02035 1.21402 0.93921 0.95013 0.93599 1.59282 1.17259 1.48338 1.03767 1.20991 0.95120 1.00182 0.88577 1.22211 0.99072 0.98110 0.98906 1.21586 0.90658 0.96944 0.94516 0.91683 1.21995 1.02896 1.01669 0.93921 1.61295 1.05864 1.63509 1.03539 1.19096 0.93565 0.93208 0.85152 0.98374 1.21396 0.90791 1.32610 1.09741 0.94407 1.25792 0.95648 0.96646 0.99689 1.70042 0.98816 1.47856 1.41991 0.85850 0.76880 0.79140 0.80712 1.18499 1.22116 1.18527 1.21506 0.90590 0.91050 0.99412 0.87714 0.86910 0.89216 0.88647 0.90831 0.95921 0.89677 0.93530 0.88307 0.89269 0.92766 0.93273 0.86746 0.92566 0.94801 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.24 14.32 67.77 0.97 -2.27 16 2 C -0.20 -5.14 8.00 25.64 0.21 -4.93 16 3 C 0.09 2.39 5.61 85.56 0.48 2.87 16 4 N -0.56 -19.07 4.16 -916.85 -3.81 -22.88 16 5 C 0.08 2.31 4.66 88.05 0.41 2.72 16 6 C -0.14 -4.34 5.18 30.38 0.16 -4.18 16 7 C 0.07 2.47 2.66 43.93 0.12 2.59 16 8 H 0.07 2.27 6.53 -2.39 -0.02 2.25 16 9 C -0.15 -4.11 8.94 71.98 0.64 -3.47 16 10 N -0.70 -31.59 6.01 -476.03 -2.86 -34.45 16 11 C 0.20 9.61 1.58 43.28 0.07 9.68 16 12 H 0.00 -0.06 6.31 -2.39 -0.02 -0.08 16 13 C -0.51 -29.94 9.21 25.60 0.24 -29.70 16 14 H 0.04 2.44 7.68 -2.91 -0.02 2.42 16 15 C 0.02 1.21 5.47 84.65 0.46 1.67 16 16 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 17 Si 0.95 46.31 24.48 68.60 1.68 47.99 16 18 H -0.26 -12.04 7.06 99.48 0.70 -11.33 16 19 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 20 H -0.26 -12.08 6.48 99.48 0.64 -11.44 16 21 C 0.10 4.23 3.90 85.43 0.33 4.56 16 22 H 0.10 1.79 8.06 -2.91 -0.02 1.77 16 23 H 0.11 1.79 7.84 -2.91 -0.02 1.77 16 24 H 0.09 2.58 7.57 -2.91 -0.02 2.55 16 25 H 0.10 2.14 7.59 -2.39 -0.02 2.12 16 26 H 0.07 2.13 8.01 -2.39 -0.02 2.11 16 27 H 0.02 0.65 6.84 -2.39 -0.02 0.63 16 28 H 0.09 2.04 7.88 -2.39 -0.02 2.02 16 29 H 0.05 1.66 7.19 -2.39 -0.02 1.64 16 30 H 0.10 2.30 7.68 -2.39 -0.02 2.28 16 31 H 0.09 1.88 8.08 -2.39 -0.02 1.86 16 32 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16 34 H 0.31 14.19 3.73 -89.69 -0.33 13.85 16 35 H 0.27 15.84 8.31 -92.70 -0.77 15.07 16 36 H 0.03 1.41 6.66 -2.38 -0.02 1.40 16 37 H 0.06 2.72 7.10 -2.39 -0.02 2.70 16 Total: -1.00 -66.90 278.12 0.02 -66.88 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.63 Total: 23.04 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 4.08 Total: -20.48 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -6.37 Total: -117.43 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.68 Total: 47.99 kcal Total: -66.90 0.02 -66.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219418442.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.843 kcal (2) G-P(sol) polarization free energy of solvation -66.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds