Wall clock time and date at job start Mon Mar 30 2020 03:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.87997 * 2 1 4 4 C 1.54311 * 110.02793 * 121.12233 * 2 1 3 5 5 C 1.55141 * 103.02087 * 141.76092 * 4 2 1 6 6 H 1.09006 * 110.98665 * 82.48086 * 5 4 2 7 7 N 1.46900 * 110.99079 * 206.25465 * 5 4 2 8 8 C 1.46899 * 110.99970 * 205.00065 * 7 5 4 9 9 C 1.50700 * 109.46924 * 180.02562 * 8 7 5 10 10 H 1.07997 * 120.00448 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99592 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99413 * 179.97438 * 11 9 8 13 13 Si 1.86794 * 120.00305 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47063 * 89.99867 * 13 11 9 15 15 H 1.48494 * 109.47196 * 209.99852 * 13 11 9 16 16 H 1.48500 * 109.47005 * 330.00196 * 13 11 9 17 17 C 1.54898 * 101.65363 * 324.35133 * 5 4 2 18 18 N 1.47446 * 109.88640 * 238.97447 * 2 1 3 19 19 C 1.46896 * 111.00026 * 3.68903 * 18 2 1 20 20 C 1.53004 * 117.50063 * 142.39029 * 19 18 2 21 21 C 1.53002 * 117.49911 * 73.72780 * 19 18 2 22 22 H 1.08989 * 109.47517 * 174.27624 * 1 2 3 23 23 H 1.09005 * 109.46996 * 294.27743 * 1 2 3 24 24 H 1.09001 * 109.47331 * 54.26753 * 1 2 3 25 25 H 1.09000 * 110.70958 * 260.14836 * 4 2 1 26 26 H 1.09003 * 110.70462 * 23.20921 * 4 2 1 27 27 H 1.00907 * 110.99829 * 81.05327 * 7 5 4 28 28 H 1.09003 * 109.47067 * 300.00293 * 8 7 5 29 29 H 1.08998 * 109.47266 * 60.00305 * 8 7 5 30 30 H 0.97000 * 119.99640 * 180.02562 * 12 11 9 31 31 H 1.09001 * 110.37678 * 278.23854 * 17 5 4 32 32 H 1.08998 * 110.37462 * 155.90195 * 17 5 4 33 33 H 1.08997 * 115.55078 * 288.05972 * 19 18 2 34 34 H 1.08994 * 117.49451 * 359.97438 * 20 19 18 35 35 H 1.08992 * 117.49720 * 145.02113 * 20 19 18 36 36 H 1.09002 * 117.49758 * 214.97687 * 21 19 18 37 37 H 1.08993 * 117.49891 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9007 1.0251 0.0000 4 6 2.0585 -0.7494 1.2411 5 6 3.2936 -1.5098 0.6906 6 1 4.1688 -0.8609 0.6578 7 7 3.5656 -2.7158 1.4841 8 6 4.9799 -3.1013 1.3878 9 6 5.2201 -4.3398 2.2121 10 1 4.4040 -4.7948 2.7537 11 6 6.4821 -4.8915 2.2758 12 7 6.6918 -5.9720 2.9955 13 14 7.8939 -4.1042 1.3397 14 1 8.5607 -3.0976 2.2042 15 1 8.8741 -5.1497 0.9508 16 1 7.3692 -3.4393 0.1199 17 6 2.8221 -1.8799 -0.7377 18 7 2.0315 -0.7146 -1.1882 19 6 0.9237 -1.1341 -2.0568 20 6 1.1439 -1.0586 -3.5690 21 6 0.2210 -0.0513 -2.8783 22 1 -0.3634 -1.0224 -0.1025 23 1 -0.3633 0.4225 0.9368 24 1 -0.3634 0.6002 -0.8342 25 1 2.3544 -0.0457 2.0192 26 1 1.3100 -1.4464 1.6181 27 1 2.9638 -3.4760 1.2044 28 1 5.2312 -3.3038 0.3467 29 1 5.6040 -2.2894 1.7610 30 1 7.5797 -6.3599 3.0406 31 1 2.1992 -2.7740 -0.7121 32 1 3.6798 -2.0327 -1.3927 33 1 0.3132 -1.9536 -1.6775 34 1 2.1107 -0.6972 -3.9193 35 1 0.6780 -1.8281 -4.1845 36 1 -0.8516 -0.1587 -3.0398 37 1 0.5805 0.9723 -2.7739 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229933227.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:45 Heat of formation + Delta-G solvation = 34.888803 kcal Electronic energy + Delta-G solvation = -15681.541217 eV Core-core repulsion = 13266.515043 eV Total energy + Delta-G solvation = -2415.026174 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.75004 -36.54115 -34.38687 -32.33796 -30.78363 -29.32667 -26.45215 -24.89177 -22.49309 -22.25614 -21.20150 -20.37716 -19.10650 -16.90516 -16.55941 -15.76458 -15.00935 -14.50718 -13.94586 -13.88473 -13.58542 -13.31290 -12.72459 -12.40142 -12.36307 -11.98353 -11.87933 -11.59590 -11.33186 -11.23258 -11.05120 -10.63320 -10.55713 -10.33815 -10.27018 -9.99913 -9.79036 -9.29256 -8.60045 -8.32171 -7.45733 -6.06738 -4.04947 3.29102 3.36208 3.38922 3.69907 3.82321 4.41677 4.72340 4.84494 4.85211 4.90239 5.09598 5.20818 5.25875 5.35013 5.43258 5.49475 5.52371 5.56826 5.61595 5.74920 5.85495 5.90135 6.06796 6.08939 6.11658 6.22586 6.34668 6.50069 6.75799 7.01861 7.02862 7.20010 7.58970 7.88360 8.28859 8.63316 9.00834 9.55114 11.06545 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.042709 B = 0.005862 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.441019 B = 4775.289743 C = 5073.916290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.070 3.930 3 H 0.081 0.919 4 C -0.126 4.126 5 C 0.078 3.922 6 H 0.084 0.916 7 N -0.668 5.668 8 C 0.164 3.836 9 C -0.517 4.517 10 H 0.078 0.922 11 C 0.069 3.931 12 N -0.900 5.900 13 Si 0.877 3.123 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.267 1.267 17 C 0.019 3.981 18 N -0.499 5.499 19 C 0.007 3.993 20 C -0.169 4.169 21 C -0.168 4.168 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.336 0.664 28 H -0.014 1.014 29 H 0.022 0.978 30 H 0.264 0.736 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.069 12.011 -10.432 19.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.038 4.038 3 H 0.099 0.901 4 C -0.165 4.165 5 C -0.034 4.034 6 H 0.102 0.898 7 N -0.297 5.297 8 C 0.036 3.964 9 C -0.556 4.556 10 H 0.096 0.904 11 C -0.133 4.133 12 N -0.539 5.539 13 Si 0.705 3.295 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.192 1.192 17 C -0.110 4.110 18 N -0.223 5.223 19 C -0.103 4.103 20 C -0.206 4.206 21 C -0.205 4.205 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.154 0.846 28 H 0.003 0.997 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.507 12.544 -10.059 19.772 hybrid contribution 0.393 -0.640 -0.887 1.162 sum -11.114 11.904 -10.946 19.622 Atomic orbital electron populations 1.22337 0.95858 1.02016 1.01965 1.22395 0.93886 0.98535 0.89022 0.90055 1.22849 0.97867 0.99113 0.96719 1.22729 0.97340 0.94296 0.89025 0.89795 1.60511 1.07927 1.05893 1.55390 1.20042 0.84798 0.96582 0.94950 1.21061 0.96521 1.08806 1.29184 0.90351 1.24904 0.98550 0.94738 0.95092 1.69903 1.22450 1.21121 1.40447 0.86821 0.82484 0.79311 0.80919 1.20112 1.21204 1.19177 1.23791 0.97323 0.91771 0.98145 1.63459 1.19477 1.23065 1.16345 1.22416 0.96202 0.99862 0.91782 1.23084 1.01430 1.01894 0.94214 1.23007 0.97690 0.95995 1.03836 0.92641 0.92514 0.91716 0.90820 0.91044 0.84598 0.99663 0.95950 0.92634 0.93387 0.90544 0.89770 0.88386 0.89047 0.89009 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 7.81 37.16 0.29 -1.43 16 2 C 0.07 0.87 3.97 -66.73 -0.26 0.60 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 4 C -0.13 -1.80 6.17 -24.91 -0.15 -1.96 16 5 C 0.08 1.33 3.38 -65.58 -0.22 1.11 16 6 H 0.08 1.50 7.83 -51.93 -0.41 1.09 16 7 N -0.67 -13.80 6.40 -105.74 -0.68 -14.47 16 8 C 0.16 4.00 4.37 -4.98 -0.02 3.97 16 9 C -0.52 -14.89 9.87 -34.44 -0.34 -15.23 16 10 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 11 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 12 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 13 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 16 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 17 C 0.02 0.30 6.32 -2.30 -0.01 0.28 16 18 N -0.50 -6.76 5.30 -215.45 -1.14 -7.90 16 19 C 0.01 0.08 3.35 -67.71 -0.23 -0.15 16 20 C -0.17 -1.76 10.46 -26.69 -0.28 -2.04 16 21 C -0.17 -1.61 8.06 -26.69 -0.22 -1.82 16 22 H 0.05 0.61 6.72 -51.94 -0.35 0.26 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.62 5.77 -51.93 -0.30 0.32 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.07 1.04 7.85 -51.93 -0.41 0.63 16 27 H 0.34 6.76 8.18 -39.29 -0.32 6.44 16 28 H -0.01 -0.35 7.20 -51.93 -0.37 -0.72 16 29 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.05 0.75 7.34 -51.93 -0.38 0.36 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.08 1.00 7.17 -51.93 -0.37 0.63 16 34 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.10 0.96 8.09 -51.93 -0.42 0.54 16 LS Contribution 290.14 15.07 4.37 4.37 Total: -1.00 -29.96 290.14 -9.16 -39.11 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -6.27 Total: 3.61 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -1.54 Total: -14.74 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: -1.05 Total: -49.42 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.96 -9.16 -39.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229933227.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.003 kcal (2) G-P(sol) polarization free energy of solvation -29.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds