Wall clock time and date at job start Mon Mar 30 2020 03:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.87997 * 2 1 4 4 C 1.54311 * 110.02793 * 121.12233 * 2 1 3 5 5 C 1.55141 * 103.02087 * 141.76092 * 4 2 1 6 6 H 1.09006 * 110.98665 * 82.48086 * 5 4 2 7 7 N 1.46900 * 110.99079 * 206.25465 * 5 4 2 8 8 C 1.46899 * 110.99970 * 205.00065 * 7 5 4 9 9 C 1.50700 * 109.46924 * 180.02562 * 8 7 5 10 10 H 1.07997 * 120.00448 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99592 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99413 * 179.97438 * 11 9 8 13 13 Si 1.86794 * 120.00305 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47063 * 89.99867 * 13 11 9 15 15 H 1.48494 * 109.47196 * 209.99852 * 13 11 9 16 16 H 1.48500 * 109.47005 * 330.00196 * 13 11 9 17 17 C 1.54898 * 101.65363 * 324.35133 * 5 4 2 18 18 N 1.47446 * 109.88640 * 238.97447 * 2 1 3 19 19 C 1.46896 * 111.00026 * 3.68903 * 18 2 1 20 20 C 1.53004 * 117.50063 * 142.39029 * 19 18 2 21 21 C 1.53002 * 117.49911 * 73.72780 * 19 18 2 22 22 H 1.08989 * 109.47517 * 174.27624 * 1 2 3 23 23 H 1.09005 * 109.46996 * 294.27743 * 1 2 3 24 24 H 1.09001 * 109.47331 * 54.26753 * 1 2 3 25 25 H 1.09000 * 110.70958 * 260.14836 * 4 2 1 26 26 H 1.09003 * 110.70462 * 23.20921 * 4 2 1 27 27 H 1.00907 * 110.99829 * 81.05327 * 7 5 4 28 28 H 1.09003 * 109.47067 * 300.00293 * 8 7 5 29 29 H 1.08998 * 109.47266 * 60.00305 * 8 7 5 30 30 H 0.97000 * 119.99640 * 180.02562 * 12 11 9 31 31 H 1.09001 * 110.37678 * 278.23854 * 17 5 4 32 32 H 1.08998 * 110.37462 * 155.90195 * 17 5 4 33 33 H 1.08997 * 115.55078 * 288.05972 * 19 18 2 34 34 H 1.08994 * 117.49451 * 359.97438 * 20 19 18 35 35 H 1.08992 * 117.49720 * 145.02113 * 20 19 18 36 36 H 1.09002 * 117.49758 * 214.97687 * 21 19 18 37 37 H 1.08993 * 117.49891 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9007 1.0251 0.0000 4 6 2.0585 -0.7494 1.2411 5 6 3.2936 -1.5098 0.6906 6 1 4.1688 -0.8609 0.6578 7 7 3.5656 -2.7158 1.4841 8 6 4.9799 -3.1013 1.3878 9 6 5.2201 -4.3398 2.2121 10 1 4.4040 -4.7948 2.7537 11 6 6.4821 -4.8915 2.2758 12 7 6.6918 -5.9720 2.9955 13 14 7.8939 -4.1042 1.3397 14 1 8.5607 -3.0976 2.2042 15 1 8.8741 -5.1497 0.9508 16 1 7.3692 -3.4393 0.1199 17 6 2.8221 -1.8799 -0.7377 18 7 2.0315 -0.7146 -1.1882 19 6 0.9237 -1.1341 -2.0568 20 6 1.1439 -1.0586 -3.5690 21 6 0.2210 -0.0513 -2.8783 22 1 -0.3634 -1.0224 -0.1025 23 1 -0.3633 0.4225 0.9368 24 1 -0.3634 0.6002 -0.8342 25 1 2.3544 -0.0457 2.0192 26 1 1.3100 -1.4464 1.6181 27 1 2.9638 -3.4760 1.2044 28 1 5.2312 -3.3038 0.3467 29 1 5.6040 -2.2894 1.7610 30 1 7.5797 -6.3599 3.0406 31 1 2.1992 -2.7740 -0.7121 32 1 3.6798 -2.0327 -1.3927 33 1 0.3132 -1.9536 -1.6775 34 1 2.1107 -0.6972 -3.9193 35 1 0.6780 -1.8281 -4.1845 36 1 -0.8516 -0.1587 -3.0398 37 1 0.5805 0.9723 -2.7739 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229933227.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:45 Heat of formation + Delta-G solvation = 13.314262 kcal Electronic energy + Delta-G solvation = -15682.476759 eV Core-core repulsion = 13266.515043 eV Total energy + Delta-G solvation = -2415.961716 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.82683 -37.73470 -35.88190 -34.34854 -31.89095 -30.81969 -28.15332 -26.08129 -23.60967 -23.28904 -22.84239 -21.73354 -20.07830 -18.94373 -17.71360 -17.06454 -16.46198 -15.93638 -15.34757 -15.23155 -14.80894 -14.67562 -14.51897 -13.74770 -13.65925 -13.40998 -13.06316 -12.86236 -12.54561 -12.40818 -12.30379 -12.22707 -11.95147 -11.80343 -11.66941 -11.36315 -11.15040 -10.88780 -10.81832 -9.44036 -9.05487 -8.32276 -6.37030 1.34249 1.35232 1.46505 2.32364 2.77471 2.87339 3.01972 3.47051 3.70017 3.82204 4.02804 4.12420 4.17860 4.21014 4.33629 4.39873 4.50590 4.60878 4.75334 4.79852 4.80733 4.84855 4.88861 5.03937 5.04208 5.10451 5.18199 5.24858 5.32963 5.42346 5.49232 5.88719 5.99553 6.21253 6.50634 6.61477 6.72833 7.28117 8.84480 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.042709 B = 0.005862 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.441019 B = 4775.289743 C = 5073.916290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.072 3.928 3 H 0.089 0.911 4 C -0.119 4.119 5 C 0.073 3.927 6 H 0.077 0.923 7 N -0.675 5.675 8 C 0.177 3.823 9 C -0.530 4.530 10 H 0.037 0.963 11 C 0.010 3.990 12 N -0.947 5.947 13 Si 0.950 3.050 14 H -0.265 1.265 15 H -0.279 1.279 16 H -0.252 1.252 17 C 0.028 3.972 18 N -0.503 5.503 19 C -0.014 4.014 20 C -0.171 4.171 21 C -0.146 4.146 22 H 0.049 0.951 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.336 0.664 28 H -0.013 1.013 29 H 0.023 0.977 30 H 0.268 0.732 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.619 13.988 -12.037 22.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.036 4.036 3 H 0.107 0.893 4 C -0.158 4.158 5 C -0.038 4.038 6 H 0.095 0.905 7 N -0.304 5.304 8 C 0.048 3.952 9 C -0.568 4.568 10 H 0.056 0.944 11 C -0.188 4.188 12 N -0.587 5.587 13 Si 0.773 3.227 14 H -0.190 1.190 15 H -0.205 1.205 16 H -0.176 1.176 17 C -0.102 4.102 18 N -0.227 5.227 19 C -0.123 4.123 20 C -0.208 4.208 21 C -0.184 4.184 22 H 0.068 0.932 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.154 0.846 28 H 0.005 0.995 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.087 14.543 -11.672 22.222 hybrid contribution 0.476 -1.280 -0.352 1.410 sum -11.611 13.263 -12.024 21.338 Atomic orbital electron populations 1.22273 0.94039 1.02056 1.03086 1.22429 0.95351 0.98261 0.87541 0.89341 1.22803 0.96378 0.98886 0.97770 1.22786 0.98360 0.92681 0.89976 0.90521 1.60430 1.05945 1.07048 1.57025 1.19766 0.87093 0.94456 0.93866 1.21333 0.95699 1.10402 1.29390 0.94443 1.25863 1.01691 0.95179 0.96048 1.70051 1.23507 1.22875 1.42253 0.85670 0.78515 0.78577 0.79912 1.19002 1.20486 1.17552 1.23563 0.97276 0.92548 0.96767 1.63450 1.20496 1.21984 1.16814 1.22482 0.96391 1.01334 0.92090 1.23142 1.01538 1.02743 0.93408 1.23073 0.98631 0.95316 1.01346 0.93174 0.91538 0.90388 0.90354 0.91434 0.84566 0.99483 0.95896 0.92282 0.93805 0.91722 0.90002 0.89325 0.87773 0.86921 0.88333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 7.81 71.98 0.56 -2.30 16 2 C 0.07 1.64 3.97 45.25 0.18 1.82 16 3 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 4 C -0.12 -3.25 6.17 31.77 0.20 -3.06 16 5 C 0.07 2.44 3.38 46.30 0.16 2.60 16 6 H 0.08 2.67 7.83 -2.38 -0.02 2.65 16 7 N -0.68 -28.03 6.40 -488.45 -3.13 -31.16 16 8 C 0.18 8.61 4.37 85.56 0.37 8.98 16 9 C -0.53 -31.23 9.87 25.60 0.25 -30.98 16 10 H 0.04 2.44 8.06 -2.91 -0.02 2.42 16 11 C 0.01 0.59 5.47 84.66 0.46 1.05 16 12 N -0.95 -59.72 13.96 21.45 0.30 -59.42 16 13 Si 0.95 44.63 27.47 68.60 1.88 46.51 16 14 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 15 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 17 C 0.03 0.85 6.32 86.77 0.55 1.40 16 18 N -0.50 -12.79 5.30 -835.56 -4.43 -17.22 16 19 C -0.01 -0.30 3.35 44.92 0.15 -0.15 16 20 C -0.17 -3.19 10.46 30.62 0.32 -2.87 16 21 C -0.15 -2.34 8.06 30.62 0.25 -2.10 16 22 H 0.05 0.98 6.72 -2.39 -0.02 0.96 16 23 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 24 H 0.08 1.22 5.77 -2.39 -0.01 1.21 16 25 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.07 1.89 7.85 -2.39 -0.02 1.88 16 27 H 0.34 13.80 8.18 -89.69 -0.73 13.07 16 28 H -0.01 -0.60 7.20 -2.39 -0.02 -0.62 16 29 H 0.02 1.12 7.51 -2.39 -0.02 1.10 16 30 H 0.27 15.71 8.31 -92.71 -0.77 14.93 16 31 H 0.04 1.35 7.34 -2.39 -0.02 1.33 16 32 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.08 1.80 7.17 -2.39 -0.02 1.79 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.10 1.60 8.09 -2.39 -0.02 1.58 16 Total: -1.00 -64.78 290.14 -1.68 -66.46 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.24 Total: 20.42 kcal Atomic # 6 Polarization: -29.04 SS G_CDS: 3.45 Total: -25.59 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -7.26 Total: -107.80 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.51 kcal Total: -64.78 -1.68 -66.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229933227.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.774 kcal (2) G-P(sol) polarization free energy of solvation -64.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds