Wall clock time and date at job start Mon Mar 30 2020 03:23:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08994 * 110.64817 * 2 1
4 4 C 1.54935 * 110.72042 * 236.85056 * 2 1 3
5 5 N 1.48541 * 103.22509 * 204.04972 * 4 2 1
6 6 C 1.46898 * 110.99766 * 159.71910 * 5 4 2
7 7 C 1.53000 * 109.46887 * 164.36997 * 6 5 4
8 8 C 1.50697 * 115.55299 * 306.40924 * 7 6 5
9 9 H 1.08003 * 120.00122 * 144.72457 * 8 7 6
10 10 C 1.37876 * 119.99927 * 324.73061 * 8 7 6
11 11 N 1.31507 * 119.99925 * 350.07418 * 10 8 7
12 12 Si 1.86804 * 119.99982 * 170.07340 * 10 8 7
13 13 H 1.48500 * 109.47029 * 90.00032 * 12 10 8
14 14 H 1.48499 * 109.47045 * 209.99807 * 12 10 8
15 15 H 1.48494 * 109.47137 * 330.00144 * 12 10 8
16 16 C 1.53007 * 117.49850 * 160.74135 * 7 6 5
17 17 C 1.53006 * 117.49777 * 92.08155 * 7 6 5
18 18 C 1.47903 * 105.82031 * 39.20939 * 5 4 2
19 19 C 1.53994 * 107.05609 * 334.66819 * 18 5 4
20 20 H 1.09000 * 110.31175 * 242.30796 * 19 18 5
21 21 N 1.46900 * 110.31089 * 120.14343 * 19 18 5
22 22 H 1.08995 * 109.47124 * 179.29828 * 1 2 3
23 23 H 1.09005 * 109.47036 * 299.29975 * 1 2 3
24 24 H 1.08998 * 109.47057 * 59.29489 * 1 2 3
25 25 H 1.09000 * 110.67080 * 322.48170 * 4 2 1
26 26 H 1.09000 * 110.66875 * 85.61679 * 4 2 1
27 27 H 1.08997 * 109.47263 * 284.36840 * 6 5 4
28 28 H 1.08997 * 109.47209 * 44.37596 * 6 5 4
29 29 H 0.97003 * 119.99990 * 185.01635 * 11 10 8
30 30 H 1.08995 * 117.49984 * 359.97438 * 16 7 6
31 31 H 1.09000 * 117.49734 * 145.02536 * 16 7 6
32 32 H 1.09003 * 117.49659 * 214.97923 * 17 7 6
33 33 H 1.08996 * 117.49855 * 359.97438 * 17 7 6
34 34 H 1.08994 * 109.91867 * 94.01586 * 18 5 4
35 35 H 1.08997 * 109.91803 * 215.12231 * 18 5 4
36 36 H 1.00895 * 111.00216 * 64.28155 * 21 19 18
37 37 H 1.00901 * 111.00167 * 188.24025 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9144 1.0199 0.0000
4 6 2.0782 -0.7924 -1.2133
5 7 3.4335 -1.2041 -0.7660
6 6 3.9243 -2.3430 -1.5534
7 6 5.4332 -2.4920 -1.3488
8 6 6.2505 -1.2541 -1.6146
9 1 7.1247 -1.0452 -1.0156
10 6 5.8823 -0.3882 -2.6223
11 7 4.9422 -0.7330 -3.4748
12 14 6.7189 1.2749 -2.7768
13 1 7.9086 1.1507 -3.6568
14 1 5.7692 2.2541 -3.3637
15 1 7.1440 1.7419 -1.4328
16 6 6.0633 -3.8425 -1.6957
17 6 5.9060 -3.4243 -0.2315
18 6 3.2942 -1.5671 0.6610
19 6 2.0810 -0.7923 1.2078
20 1 2.3930 -0.1091 1.9978
21 7 1.0647 -1.7257 1.7117
22 1 -0.3633 -1.0275 -0.0126
23 1 -0.3633 0.5029 0.8962
24 1 -0.3633 0.5247 -0.8836
25 1 1.4578 -1.6657 -1.4146
26 1 2.1414 -0.1529 -2.0937
27 1 3.4218 -3.2537 -1.2273
28 1 3.7161 -2.1713 -2.6094
29 1 4.7336 -0.1562 -4.2263
30 1 5.4028 -4.6249 -2.0692
31 1 7.0691 -3.8355 -2.1157
32 1 6.8084 -3.1424 0.3110
33 1 5.1421 -3.9312 0.3580
34 1 3.1236 -2.6394 0.7565
35 1 4.1951 -1.2846 1.2057
36 1 1.4136 -2.2486 2.5008
37 1 0.2127 -1.2396 1.9482
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000235353519.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:23:52
Heat of formation + Delta-G solvation = 37.031104 kcal
Electronic energy + Delta-G solvation = -16471.972208 eV
Core-core repulsion = 14057.038931 eV
Total energy + Delta-G solvation = -2414.933277 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 224.158 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-38.79582 -36.37410 -33.22155 -31.90946 -31.19196 -27.59467 -25.95522 -25.23889
-23.46255 -21.02779 -20.41441 -19.12259 -18.62337 -16.20986 -15.91934 -15.25968
-14.52450 -14.49220 -13.67037 -13.46649 -13.40723 -12.70779 -12.34158 -12.01649
-11.82176 -11.49942 -11.13167 -10.86257 -10.82402 -10.58488 -10.46631 -10.34612
-10.26822 -10.19267 -9.81344 -9.13410 -8.90035 -8.53555 -8.46301 -7.87257
-7.13038 -5.81108 -3.82274 3.39469 3.46496 3.51825 4.54825 4.66118
4.99406 5.05337 5.17912 5.31869 5.48052 5.71177 5.76163 5.87804
5.96298 6.08404 6.24484 6.27619 6.33580 6.38553 6.49104 6.61983
6.66326 6.70729 6.75665 6.80596 6.95156 7.04964 7.24684 7.37943
7.43708 7.58559 7.66306 8.06603 8.20383 8.35139 8.66802 9.10951
9.76819 11.21481
Molecular weight = 224.16amu
Principal moments of inertia in cm(-1)
A = 0.024731 B = 0.010846 C = 0.008674
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1131.899463 B = 2580.952365 C = 3227.138016
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.092 4.092
3 H 0.076 0.924
4 C 0.054 3.946
5 N -0.471 5.471
6 C 0.097 3.903
7 C 0.071 3.929
8 C -0.471 4.471
9 H 0.052 0.948
10 C 0.089 3.911
11 N -0.878 5.878
12 Si 0.890 3.110
13 H -0.287 1.287
14 H -0.287 1.287
15 H -0.276 1.276
16 C -0.210 4.210
17 C -0.217 4.217
18 C 0.049 3.951
19 C 0.080 3.920
20 H 0.036 0.964
21 N -0.842 5.842
22 H 0.067 0.933
23 H 0.044 0.956
24 H 0.051 0.949
25 H 0.032 0.968
26 H 0.075 0.925
27 H -0.010 1.010
28 H 0.113 0.887
29 H 0.256 0.744
30 H 0.060 0.940
31 H 0.076 0.924
32 H 0.071 0.929
33 H 0.061 0.939
34 H 0.040 0.960
35 H 0.070 0.930
36 H 0.335 0.665
37 H 0.336 0.664
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.957 0.260 6.950 10.568
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.112 4.112
3 H 0.095 0.905
4 C -0.074 4.074
5 N -0.194 5.194
6 C -0.031 4.031
7 C 0.070 3.930
8 C -0.509 4.509
9 H 0.070 0.930
10 C -0.114 4.114
11 N -0.516 5.516
12 Si 0.718 3.282
13 H -0.213 1.213
14 H -0.213 1.213
15 H -0.201 1.201
16 C -0.248 4.248
17 C -0.255 4.255
18 C -0.080 4.080
19 C -0.032 4.032
20 H 0.054 0.946
21 N -0.373 5.373
22 H 0.086 0.914
23 H 0.063 0.937
24 H 0.070 0.930
25 H 0.051 0.949
26 H 0.093 0.907
27 H 0.008 0.992
28 H 0.131 0.869
29 H 0.066 0.934
30 H 0.079 0.921
31 H 0.094 0.906
32 H 0.089 0.911
33 H 0.080 0.920
34 H 0.059 0.941
35 H 0.088 0.912
36 H 0.147 0.853
37 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -7.664 0.456 6.020 9.757
hybrid contribution 0.055 0.634 0.969 1.159
sum -7.609 1.090 6.989 10.389
Atomic orbital electron populations
1.21675 0.95314 1.02246 1.00531 1.22116 0.94855 0.99037 0.95180
0.90513 1.23078 0.90126 0.97518 0.96684 1.64599 1.19734 1.35346
0.99709 1.21880 0.93770 0.86920 1.00501 1.18926 0.91855 0.88677
0.93569 1.20274 1.09760 1.04231 1.16588 0.92974 1.24725 0.94122
0.97137 0.95413 1.69792 1.31192 1.37300 1.13274 0.86654 0.78749
0.84814 0.77954 1.21336 1.21335 1.20061 1.22972 1.01719 1.02889
0.97236 1.22909 1.02102 1.09143 0.91319 1.22902 0.95366 0.97332
0.92416 1.22255 0.92203 0.92776 0.95948 0.94633 1.58929 1.07371
1.30477 1.40550 0.91371 0.93694 0.92963 0.94937 0.90695 0.99233
0.86895 0.93397 0.92101 0.90566 0.91066 0.92027 0.94141 0.91160
0.85258 0.85004
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.80 8.03 37.16 0.30 -1.51 16
2 C -0.09 -1.49 3.63 -88.76 -0.32 -1.81 16
3 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16
4 C 0.05 1.06 5.92 -1.89 -0.01 1.05 16
5 N -0.47 -10.47 4.76 -230.45 -1.10 -11.56 16
6 C 0.10 2.34 3.92 -3.83 -0.01 2.33 16
7 C 0.07 1.78 1.84 -155.65 -0.29 1.50 16
8 C -0.47 -13.05 8.72 -34.44 -0.30 -13.36 16
9 H 0.05 1.47 7.83 -52.48 -0.41 1.06 16
10 C 0.09 2.43 5.15 -17.82 -0.09 2.33 16
11 N -0.88 -24.25 10.74 55.43 0.60 -23.66 16
12 Si 0.89 21.63 29.55 -169.99 -5.02 16.61 16
13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
16 C -0.21 -4.94 9.96 -26.69 -0.27 -5.21 16
17 C -0.22 -4.92 9.65 -26.69 -0.26 -5.18 16
18 C 0.05 0.94 5.98 -2.75 -0.02 0.93 16
19 C 0.08 1.25 4.05 -66.35 -0.27 0.98 16
20 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16
21 N -0.84 -11.00 8.29 -3.52 -0.03 -11.02 16
22 H 0.07 0.90 7.17 -51.93 -0.37 0.53 16
23 H 0.04 0.49 7.83 -51.93 -0.41 0.09 16
24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16
25 H 0.03 0.64 7.93 -51.93 -0.41 0.23 16
26 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16
27 H -0.01 -0.24 7.51 -51.93 -0.39 -0.63 16
28 H 0.11 3.00 5.90 -51.93 -0.31 2.70 16
29 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16
30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16
31 H 0.08 1.81 8.14 -51.93 -0.42 1.38 16
32 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16
33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16
34 H 0.04 0.80 7.21 -51.93 -0.37 0.43 16
35 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16
36 H 0.34 3.89 9.08 -39.29 -0.36 3.54 16
37 H 0.34 3.71 7.15 -39.29 -0.28 3.43 16
LS Contribution 290.69 15.07 4.38 4.38
Total: -1.00 -28.11 290.69 -8.96 -37.07
By element:
Atomic # 1 Polarization: 12.38 SS G_CDS: -6.25 Total: 6.13 kcal
Atomic # 6 Polarization: -16.41 SS G_CDS: -1.54 Total: -17.95 kcal
Atomic # 7 Polarization: -45.71 SS G_CDS: -0.53 Total: -46.24 kcal
Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal
Total LS contribution 4.38 Total: 4.38 kcal
Total: -28.11 -8.96 -37.07 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000235353519.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.102 kcal
(2) G-P(sol) polarization free energy of solvation -28.111 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.991 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.071 kcal
(6) G-S(sol) free energy of system = (1) + (5) 37.031 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds