Wall clock time and date at job start Mon Mar 30 2020 03:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 110.64817 * 2 1 4 4 C 1.54935 * 110.72042 * 236.85056 * 2 1 3 5 5 N 1.48541 * 103.22509 * 204.04972 * 4 2 1 6 6 C 1.46898 * 110.99766 * 159.71910 * 5 4 2 7 7 C 1.53000 * 109.46887 * 164.36997 * 6 5 4 8 8 C 1.50697 * 115.55299 * 306.40924 * 7 6 5 9 9 H 1.08003 * 120.00122 * 144.72457 * 8 7 6 10 10 C 1.37876 * 119.99927 * 324.73061 * 8 7 6 11 11 N 1.31507 * 119.99925 * 350.07418 * 10 8 7 12 12 Si 1.86804 * 119.99982 * 170.07340 * 10 8 7 13 13 H 1.48500 * 109.47029 * 90.00032 * 12 10 8 14 14 H 1.48499 * 109.47045 * 209.99807 * 12 10 8 15 15 H 1.48494 * 109.47137 * 330.00144 * 12 10 8 16 16 C 1.53007 * 117.49850 * 160.74135 * 7 6 5 17 17 C 1.53006 * 117.49777 * 92.08155 * 7 6 5 18 18 C 1.47903 * 105.82031 * 39.20939 * 5 4 2 19 19 C 1.53994 * 107.05609 * 334.66819 * 18 5 4 20 20 H 1.09000 * 110.31175 * 242.30796 * 19 18 5 21 21 N 1.46900 * 110.31089 * 120.14343 * 19 18 5 22 22 H 1.08995 * 109.47124 * 179.29828 * 1 2 3 23 23 H 1.09005 * 109.47036 * 299.29975 * 1 2 3 24 24 H 1.08998 * 109.47057 * 59.29489 * 1 2 3 25 25 H 1.09000 * 110.67080 * 322.48170 * 4 2 1 26 26 H 1.09000 * 110.66875 * 85.61679 * 4 2 1 27 27 H 1.08997 * 109.47263 * 284.36840 * 6 5 4 28 28 H 1.08997 * 109.47209 * 44.37596 * 6 5 4 29 29 H 0.97003 * 119.99990 * 185.01635 * 11 10 8 30 30 H 1.08995 * 117.49984 * 359.97438 * 16 7 6 31 31 H 1.09000 * 117.49734 * 145.02536 * 16 7 6 32 32 H 1.09003 * 117.49659 * 214.97923 * 17 7 6 33 33 H 1.08996 * 117.49855 * 359.97438 * 17 7 6 34 34 H 1.08994 * 109.91867 * 94.01586 * 18 5 4 35 35 H 1.08997 * 109.91803 * 215.12231 * 18 5 4 36 36 H 1.00895 * 111.00216 * 64.28155 * 21 19 18 37 37 H 1.00901 * 111.00167 * 188.24025 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0199 0.0000 4 6 2.0782 -0.7924 -1.2133 5 7 3.4335 -1.2041 -0.7660 6 6 3.9243 -2.3430 -1.5534 7 6 5.4332 -2.4920 -1.3488 8 6 6.2505 -1.2541 -1.6146 9 1 7.1247 -1.0452 -1.0156 10 6 5.8823 -0.3882 -2.6223 11 7 4.9422 -0.7330 -3.4748 12 14 6.7189 1.2749 -2.7768 13 1 7.9086 1.1507 -3.6568 14 1 5.7692 2.2541 -3.3637 15 1 7.1440 1.7419 -1.4328 16 6 6.0633 -3.8425 -1.6957 17 6 5.9060 -3.4243 -0.2315 18 6 3.2942 -1.5671 0.6610 19 6 2.0810 -0.7923 1.2078 20 1 2.3930 -0.1091 1.9978 21 7 1.0647 -1.7257 1.7117 22 1 -0.3633 -1.0275 -0.0126 23 1 -0.3633 0.5029 0.8962 24 1 -0.3633 0.5247 -0.8836 25 1 1.4578 -1.6657 -1.4146 26 1 2.1414 -0.1529 -2.0937 27 1 3.4218 -3.2537 -1.2273 28 1 3.7161 -2.1713 -2.6094 29 1 4.7336 -0.1562 -4.2263 30 1 5.4028 -4.6249 -2.0692 31 1 7.0691 -3.8355 -2.1157 32 1 6.8084 -3.1424 0.3110 33 1 5.1421 -3.9312 0.3580 34 1 3.1236 -2.6394 0.7565 35 1 4.1951 -1.2846 1.2057 36 1 1.4136 -2.2486 2.5008 37 1 0.2127 -1.2396 1.9482 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235353519.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:52 Heat of formation + Delta-G solvation = 37.031104 kcal Electronic energy + Delta-G solvation = -16471.972208 eV Core-core repulsion = 14057.038931 eV Total energy + Delta-G solvation = -2414.933277 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.79582 -36.37410 -33.22155 -31.90946 -31.19196 -27.59467 -25.95522 -25.23889 -23.46255 -21.02779 -20.41441 -19.12259 -18.62337 -16.20986 -15.91934 -15.25968 -14.52450 -14.49220 -13.67037 -13.46649 -13.40723 -12.70779 -12.34158 -12.01649 -11.82176 -11.49942 -11.13167 -10.86257 -10.82402 -10.58488 -10.46631 -10.34612 -10.26822 -10.19267 -9.81344 -9.13410 -8.90035 -8.53555 -8.46301 -7.87257 -7.13038 -5.81108 -3.82274 3.39469 3.46496 3.51825 4.54825 4.66118 4.99406 5.05337 5.17912 5.31869 5.48052 5.71177 5.76163 5.87804 5.96298 6.08404 6.24484 6.27619 6.33580 6.38553 6.49104 6.61983 6.66326 6.70729 6.75665 6.80596 6.95156 7.04964 7.24684 7.37943 7.43708 7.58559 7.66306 8.06603 8.20383 8.35139 8.66802 9.10951 9.76819 11.21481 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.024731 B = 0.010846 C = 0.008674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.899463 B = 2580.952365 C = 3227.138016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.092 4.092 3 H 0.076 0.924 4 C 0.054 3.946 5 N -0.471 5.471 6 C 0.097 3.903 7 C 0.071 3.929 8 C -0.471 4.471 9 H 0.052 0.948 10 C 0.089 3.911 11 N -0.878 5.878 12 Si 0.890 3.110 13 H -0.287 1.287 14 H -0.287 1.287 15 H -0.276 1.276 16 C -0.210 4.210 17 C -0.217 4.217 18 C 0.049 3.951 19 C 0.080 3.920 20 H 0.036 0.964 21 N -0.842 5.842 22 H 0.067 0.933 23 H 0.044 0.956 24 H 0.051 0.949 25 H 0.032 0.968 26 H 0.075 0.925 27 H -0.010 1.010 28 H 0.113 0.887 29 H 0.256 0.744 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.040 0.960 35 H 0.070 0.930 36 H 0.335 0.665 37 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.957 0.260 6.950 10.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 H 0.095 0.905 4 C -0.074 4.074 5 N -0.194 5.194 6 C -0.031 4.031 7 C 0.070 3.930 8 C -0.509 4.509 9 H 0.070 0.930 10 C -0.114 4.114 11 N -0.516 5.516 12 Si 0.718 3.282 13 H -0.213 1.213 14 H -0.213 1.213 15 H -0.201 1.201 16 C -0.248 4.248 17 C -0.255 4.255 18 C -0.080 4.080 19 C -0.032 4.032 20 H 0.054 0.946 21 N -0.373 5.373 22 H 0.086 0.914 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.093 0.907 27 H 0.008 0.992 28 H 0.131 0.869 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.147 0.853 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.664 0.456 6.020 9.757 hybrid contribution 0.055 0.634 0.969 1.159 sum -7.609 1.090 6.989 10.389 Atomic orbital electron populations 1.21675 0.95314 1.02246 1.00531 1.22116 0.94855 0.99037 0.95180 0.90513 1.23078 0.90126 0.97518 0.96684 1.64599 1.19734 1.35346 0.99709 1.21880 0.93770 0.86920 1.00501 1.18926 0.91855 0.88677 0.93569 1.20274 1.09760 1.04231 1.16588 0.92974 1.24725 0.94122 0.97137 0.95413 1.69792 1.31192 1.37300 1.13274 0.86654 0.78749 0.84814 0.77954 1.21336 1.21335 1.20061 1.22972 1.01719 1.02889 0.97236 1.22909 1.02102 1.09143 0.91319 1.22902 0.95366 0.97332 0.92416 1.22255 0.92203 0.92776 0.95948 0.94633 1.58929 1.07371 1.30477 1.40550 0.91371 0.93694 0.92963 0.94937 0.90695 0.99233 0.86895 0.93397 0.92101 0.90566 0.91066 0.92027 0.94141 0.91160 0.85258 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.03 37.16 0.30 -1.51 16 2 C -0.09 -1.49 3.63 -88.76 -0.32 -1.81 16 3 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 4 C 0.05 1.06 5.92 -1.89 -0.01 1.05 16 5 N -0.47 -10.47 4.76 -230.45 -1.10 -11.56 16 6 C 0.10 2.34 3.92 -3.83 -0.01 2.33 16 7 C 0.07 1.78 1.84 -155.65 -0.29 1.50 16 8 C -0.47 -13.05 8.72 -34.44 -0.30 -13.36 16 9 H 0.05 1.47 7.83 -52.48 -0.41 1.06 16 10 C 0.09 2.43 5.15 -17.82 -0.09 2.33 16 11 N -0.88 -24.25 10.74 55.43 0.60 -23.66 16 12 Si 0.89 21.63 29.55 -169.99 -5.02 16.61 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 C -0.21 -4.94 9.96 -26.69 -0.27 -5.21 16 17 C -0.22 -4.92 9.65 -26.69 -0.26 -5.18 16 18 C 0.05 0.94 5.98 -2.75 -0.02 0.93 16 19 C 0.08 1.25 4.05 -66.35 -0.27 0.98 16 20 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 21 N -0.84 -11.00 8.29 -3.52 -0.03 -11.02 16 22 H 0.07 0.90 7.17 -51.93 -0.37 0.53 16 23 H 0.04 0.49 7.83 -51.93 -0.41 0.09 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.03 0.64 7.93 -51.93 -0.41 0.23 16 26 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 27 H -0.01 -0.24 7.51 -51.93 -0.39 -0.63 16 28 H 0.11 3.00 5.90 -51.93 -0.31 2.70 16 29 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.08 1.81 8.14 -51.93 -0.42 1.38 16 32 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.04 0.80 7.21 -51.93 -0.37 0.43 16 35 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 36 H 0.34 3.89 9.08 -39.29 -0.36 3.54 16 37 H 0.34 3.71 7.15 -39.29 -0.28 3.43 16 LS Contribution 290.69 15.07 4.38 4.38 Total: -1.00 -28.11 290.69 -8.96 -37.07 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.25 Total: 6.13 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -1.54 Total: -17.95 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -0.53 Total: -46.24 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.11 -8.96 -37.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235353519.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.102 kcal (2) G-P(sol) polarization free energy of solvation -28.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds