Wall clock time and date at job start Mon Mar 30 2020 03:23:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08994 * 110.64817 * 2 1
4 4 C 1.54935 * 110.72042 * 236.85056 * 2 1 3
5 5 N 1.48541 * 103.22509 * 204.04972 * 4 2 1
6 6 C 1.46898 * 110.99766 * 159.71910 * 5 4 2
7 7 C 1.53000 * 109.46887 * 164.36997 * 6 5 4
8 8 C 1.50697 * 115.55299 * 306.40924 * 7 6 5
9 9 H 1.08003 * 120.00122 * 144.72457 * 8 7 6
10 10 C 1.37876 * 119.99927 * 324.73061 * 8 7 6
11 11 N 1.31507 * 119.99925 * 350.07418 * 10 8 7
12 12 Si 1.86804 * 119.99982 * 170.07340 * 10 8 7
13 13 H 1.48500 * 109.47029 * 90.00032 * 12 10 8
14 14 H 1.48499 * 109.47045 * 209.99807 * 12 10 8
15 15 H 1.48494 * 109.47137 * 330.00144 * 12 10 8
16 16 C 1.53007 * 117.49850 * 160.74135 * 7 6 5
17 17 C 1.53006 * 117.49777 * 92.08155 * 7 6 5
18 18 C 1.47903 * 105.82031 * 39.20939 * 5 4 2
19 19 C 1.53994 * 107.05609 * 334.66819 * 18 5 4
20 20 H 1.09000 * 110.31175 * 242.30796 * 19 18 5
21 21 N 1.46900 * 110.31089 * 120.14343 * 19 18 5
22 22 H 1.08995 * 109.47124 * 179.29828 * 1 2 3
23 23 H 1.09005 * 109.47036 * 299.29975 * 1 2 3
24 24 H 1.08998 * 109.47057 * 59.29489 * 1 2 3
25 25 H 1.09000 * 110.67080 * 322.48170 * 4 2 1
26 26 H 1.09000 * 110.66875 * 85.61679 * 4 2 1
27 27 H 1.08997 * 109.47263 * 284.36840 * 6 5 4
28 28 H 1.08997 * 109.47209 * 44.37596 * 6 5 4
29 29 H 0.97003 * 119.99990 * 185.01635 * 11 10 8
30 30 H 1.08995 * 117.49984 * 359.97438 * 16 7 6
31 31 H 1.09000 * 117.49734 * 145.02536 * 16 7 6
32 32 H 1.09003 * 117.49659 * 214.97923 * 17 7 6
33 33 H 1.08996 * 117.49855 * 359.97438 * 17 7 6
34 34 H 1.08994 * 109.91867 * 94.01586 * 18 5 4
35 35 H 1.08997 * 109.91803 * 215.12231 * 18 5 4
36 36 H 1.00895 * 111.00216 * 64.28155 * 21 19 18
37 37 H 1.00901 * 111.00167 * 188.24025 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9144 1.0199 0.0000
4 6 2.0782 -0.7924 -1.2133
5 7 3.4335 -1.2041 -0.7660
6 6 3.9243 -2.3430 -1.5534
7 6 5.4332 -2.4920 -1.3488
8 6 6.2505 -1.2541 -1.6146
9 1 7.1247 -1.0452 -1.0156
10 6 5.8823 -0.3882 -2.6223
11 7 4.9422 -0.7330 -3.4748
12 14 6.7189 1.2749 -2.7768
13 1 7.9086 1.1507 -3.6568
14 1 5.7692 2.2541 -3.3637
15 1 7.1440 1.7419 -1.4328
16 6 6.0633 -3.8425 -1.6957
17 6 5.9060 -3.4243 -0.2315
18 6 3.2942 -1.5671 0.6610
19 6 2.0810 -0.7923 1.2078
20 1 2.3930 -0.1091 1.9978
21 7 1.0647 -1.7257 1.7117
22 1 -0.3633 -1.0275 -0.0126
23 1 -0.3633 0.5029 0.8962
24 1 -0.3633 0.5247 -0.8836
25 1 1.4578 -1.6657 -1.4146
26 1 2.1414 -0.1529 -2.0937
27 1 3.4218 -3.2537 -1.2273
28 1 3.7161 -2.1713 -2.6094
29 1 4.7336 -0.1562 -4.2263
30 1 5.4028 -4.6249 -2.0692
31 1 7.0691 -3.8355 -2.1157
32 1 6.8084 -3.1424 0.3110
33 1 5.1421 -3.9312 0.3580
34 1 3.1236 -2.6394 0.7565
35 1 4.1951 -1.2846 1.2057
36 1 1.4136 -2.2486 2.5008
37 1 0.2127 -1.2396 1.9482
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000235353519.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:23:52
Heat of formation + Delta-G solvation = 18.473585 kcal
Electronic energy + Delta-G solvation = -16472.776922 eV
Core-core repulsion = 14057.038931 eV
Total energy + Delta-G solvation = -2415.737991 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 224.158 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.30086 -38.16086 -34.68779 -33.99022 -32.42597 -29.09040 -27.61417 -27.09790
-24.99728 -22.89323 -21.98319 -20.85473 -20.17750 -17.96002 -17.46362 -16.54197
-16.43555 -16.07710 -15.49982 -15.13511 -14.85489 -14.19585 -13.90208 -13.52800
-13.32820 -12.98532 -12.83730 -12.81231 -12.65755 -12.28311 -12.15535 -11.91546
-11.81110 -11.68833 -11.49413 -11.04013 -10.92522 -10.47371 -9.87956 -9.54049
-8.82863 -7.88709 -5.96250 1.44237 1.48044 1.56484 2.52250 3.13002
3.39122 3.68070 3.72550 3.77908 3.94424 4.18366 4.37370 4.45257
4.54558 4.67243 4.69506 4.76392 4.85774 4.87900 4.95309 4.97413
5.01772 5.11207 5.16096 5.19251 5.32512 5.39261 5.52564 5.55737
5.66187 6.05307 6.28361 6.43445 6.52712 6.67146 6.70871 7.02464
7.64322 9.11439
Molecular weight = 224.16amu
Principal moments of inertia in cm(-1)
A = 0.024731 B = 0.010846 C = 0.008674
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1131.899463 B = 2580.952365 C = 3227.138016
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.087 4.087
3 H 0.071 0.929
4 C 0.056 3.944
5 N -0.495 5.495
6 C 0.112 3.888
7 C 0.041 3.959
8 C -0.491 4.491
9 H 0.038 0.962
10 C 0.052 3.948
11 N -0.893 5.893
12 Si 0.941 3.059
13 H -0.282 1.282
14 H -0.285 1.285
15 H -0.277 1.277
16 C -0.210 4.210
17 C -0.195 4.195
18 C 0.051 3.949
19 C 0.091 3.909
20 H 0.048 0.952
21 N -0.842 5.842
22 H 0.066 0.934
23 H 0.071 0.929
24 H 0.055 0.945
25 H 0.029 0.971
26 H 0.052 0.948
27 H -0.010 1.010
28 H 0.084 0.916
29 H 0.255 0.745
30 H 0.073 0.927
31 H 0.069 0.931
32 H 0.072 0.928
33 H 0.079 0.921
34 H 0.035 0.965
35 H 0.055 0.945
36 H 0.346 0.654
37 H 0.352 0.648
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.015 0.636 8.287 12.262
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.107 4.107
3 H 0.089 0.911
4 C -0.072 4.072
5 N -0.218 5.218
6 C -0.016 4.016
7 C 0.040 3.960
8 C -0.528 4.528
9 H 0.057 0.943
10 C -0.149 4.149
11 N -0.530 5.530
12 Si 0.769 3.231
13 H -0.209 1.209
14 H -0.211 1.211
15 H -0.202 1.202
16 C -0.248 4.248
17 C -0.232 4.232
18 C -0.077 4.077
19 C -0.021 4.021
20 H 0.066 0.934
21 N -0.376 5.376
22 H 0.085 0.915
23 H 0.090 0.910
24 H 0.074 0.926
25 H 0.048 0.952
26 H 0.070 0.930
27 H 0.008 0.992
28 H 0.102 0.898
29 H 0.065 0.935
30 H 0.091 0.909
31 H 0.088 0.912
32 H 0.090 0.910
33 H 0.097 0.903
34 H 0.054 0.946
35 H 0.074 0.926
36 H 0.159 0.841
37 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges -8.732 0.826 7.371 11.457
hybrid contribution 0.408 0.478 0.549 0.835
sum -8.323 1.305 7.920 11.563
Atomic orbital electron populations
1.21607 0.92497 1.02631 1.02096 1.22096 0.97115 0.98047 0.93431
0.91065 1.23032 0.89198 0.97441 0.97577 1.64466 1.21424 1.34750
1.01140 1.21564 0.93252 0.87659 0.99159 1.19039 0.92357 0.88614
0.95947 1.20438 1.09914 1.05759 1.16735 0.94333 1.25268 0.94811
0.99570 0.95220 1.69921 1.31814 1.37920 1.13392 0.85841 0.78021
0.81563 0.77696 1.20862 1.21066 1.20192 1.22970 1.01439 1.02278
0.98159 1.22858 1.02206 1.07318 0.90803 1.22842 0.96632 0.97547
0.90722 1.22029 0.91368 0.92686 0.95999 0.93365 1.58800 1.07328
1.30083 1.41376 0.91486 0.90996 0.92624 0.95239 0.92955 0.99176
0.89806 0.93519 0.90898 0.91207 0.90953 0.90285 0.94634 0.92622
0.84054 0.83198
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.99 8.03 71.98 0.58 -2.41 16
2 C -0.09 -2.66 3.63 -9.59 -0.03 -2.70 16
3 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16
4 C 0.06 2.18 5.92 86.65 0.51 2.69 16
5 N -0.50 -22.05 4.76 -883.02 -4.20 -26.25 16
6 C 0.11 5.46 3.92 86.30 0.34 5.80 16
7 C 0.04 2.09 1.84 -52.92 -0.10 1.99 16
8 C -0.49 -27.50 8.72 25.60 0.22 -27.27 16
9 H 0.04 2.20 7.83 -2.91 -0.02 2.18 16
10 C 0.05 2.89 5.15 84.66 0.44 3.32 16
11 N -0.89 -50.06 10.74 21.45 0.23 -49.83 16
12 Si 0.94 44.63 29.55 68.60 2.03 46.65 16
13 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16
14 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16
15 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16
16 C -0.21 -9.83 9.96 30.62 0.30 -9.52 16
17 C -0.19 -8.64 9.65 30.62 0.30 -8.34 16
18 C 0.05 1.94 5.98 86.45 0.52 2.46 16
19 C 0.09 2.66 4.05 45.80 0.19 2.84 16
20 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16
21 N -0.84 -19.44 8.29 -165.03 -1.37 -20.81 16
22 H 0.07 1.57 7.17 -2.39 -0.02 1.56 16
23 H 0.07 1.28 7.83 -2.38 -0.02 1.26 16
24 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16
25 H 0.03 1.15 7.93 -2.39 -0.02 1.14 16
26 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16
27 H -0.01 -0.46 7.51 -2.39 -0.02 -0.48 16
28 H 0.08 4.57 5.90 -2.39 -0.01 4.56 16
29 H 0.26 13.80 8.32 -92.71 -0.77 13.03 16
30 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16
31 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16
32 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16
33 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16
34 H 0.04 1.36 7.21 -2.39 -0.02 1.35 16
35 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16
36 H 0.35 6.97 9.08 -89.70 -0.81 6.16 16
37 H 0.35 6.42 7.15 -89.69 -0.64 5.78 16
Total: -1.00 -59.76 290.69 -0.46 -60.22
By element:
Atomic # 1 Polarization: 21.57 SS G_CDS: -0.41 Total: 21.16 kcal
Atomic # 6 Polarization: -34.40 SS G_CDS: 3.26 Total: -31.14 kcal
Atomic # 7 Polarization: -91.55 SS G_CDS: -5.34 Total: -96.89 kcal
Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal
Total: -59.76 -0.46 -60.22 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000235353519.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.692 kcal
(2) G-P(sol) polarization free energy of solvation -59.759 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.933 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.460 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.218 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.474 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds