Wall clock time and date at job start Mon Mar 30 2020 03:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 110.64817 * 2 1 4 4 C 1.54935 * 110.72042 * 236.85056 * 2 1 3 5 5 N 1.48541 * 103.22509 * 204.04972 * 4 2 1 6 6 C 1.46898 * 110.99766 * 159.71910 * 5 4 2 7 7 C 1.53000 * 109.46887 * 164.36997 * 6 5 4 8 8 C 1.50697 * 115.55299 * 306.40924 * 7 6 5 9 9 H 1.08003 * 120.00122 * 144.72457 * 8 7 6 10 10 C 1.37876 * 119.99927 * 324.73061 * 8 7 6 11 11 N 1.31507 * 119.99925 * 350.07418 * 10 8 7 12 12 Si 1.86804 * 119.99982 * 170.07340 * 10 8 7 13 13 H 1.48500 * 109.47029 * 90.00032 * 12 10 8 14 14 H 1.48499 * 109.47045 * 209.99807 * 12 10 8 15 15 H 1.48494 * 109.47137 * 330.00144 * 12 10 8 16 16 C 1.53007 * 117.49850 * 160.74135 * 7 6 5 17 17 C 1.53006 * 117.49777 * 92.08155 * 7 6 5 18 18 C 1.47903 * 105.82031 * 39.20939 * 5 4 2 19 19 C 1.53994 * 107.05609 * 334.66819 * 18 5 4 20 20 H 1.09000 * 110.31175 * 242.30796 * 19 18 5 21 21 N 1.46900 * 110.31089 * 120.14343 * 19 18 5 22 22 H 1.08995 * 109.47124 * 179.29828 * 1 2 3 23 23 H 1.09005 * 109.47036 * 299.29975 * 1 2 3 24 24 H 1.08998 * 109.47057 * 59.29489 * 1 2 3 25 25 H 1.09000 * 110.67080 * 322.48170 * 4 2 1 26 26 H 1.09000 * 110.66875 * 85.61679 * 4 2 1 27 27 H 1.08997 * 109.47263 * 284.36840 * 6 5 4 28 28 H 1.08997 * 109.47209 * 44.37596 * 6 5 4 29 29 H 0.97003 * 119.99990 * 185.01635 * 11 10 8 30 30 H 1.08995 * 117.49984 * 359.97438 * 16 7 6 31 31 H 1.09000 * 117.49734 * 145.02536 * 16 7 6 32 32 H 1.09003 * 117.49659 * 214.97923 * 17 7 6 33 33 H 1.08996 * 117.49855 * 359.97438 * 17 7 6 34 34 H 1.08994 * 109.91867 * 94.01586 * 18 5 4 35 35 H 1.08997 * 109.91803 * 215.12231 * 18 5 4 36 36 H 1.00895 * 111.00216 * 64.28155 * 21 19 18 37 37 H 1.00901 * 111.00167 * 188.24025 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0199 0.0000 4 6 2.0782 -0.7924 -1.2133 5 7 3.4335 -1.2041 -0.7660 6 6 3.9243 -2.3430 -1.5534 7 6 5.4332 -2.4920 -1.3488 8 6 6.2505 -1.2541 -1.6146 9 1 7.1247 -1.0452 -1.0156 10 6 5.8823 -0.3882 -2.6223 11 7 4.9422 -0.7330 -3.4748 12 14 6.7189 1.2749 -2.7768 13 1 7.9086 1.1507 -3.6568 14 1 5.7692 2.2541 -3.3637 15 1 7.1440 1.7419 -1.4328 16 6 6.0633 -3.8425 -1.6957 17 6 5.9060 -3.4243 -0.2315 18 6 3.2942 -1.5671 0.6610 19 6 2.0810 -0.7923 1.2078 20 1 2.3930 -0.1091 1.9978 21 7 1.0647 -1.7257 1.7117 22 1 -0.3633 -1.0275 -0.0126 23 1 -0.3633 0.5029 0.8962 24 1 -0.3633 0.5247 -0.8836 25 1 1.4578 -1.6657 -1.4146 26 1 2.1414 -0.1529 -2.0937 27 1 3.4218 -3.2537 -1.2273 28 1 3.7161 -2.1713 -2.6094 29 1 4.7336 -0.1562 -4.2263 30 1 5.4028 -4.6249 -2.0692 31 1 7.0691 -3.8355 -2.1157 32 1 6.8084 -3.1424 0.3110 33 1 5.1421 -3.9312 0.3580 34 1 3.1236 -2.6394 0.7565 35 1 4.1951 -1.2846 1.2057 36 1 1.4136 -2.2486 2.5008 37 1 0.2127 -1.2396 1.9482 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235353519.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:52 Heat of formation + Delta-G solvation = 18.473585 kcal Electronic energy + Delta-G solvation = -16472.776922 eV Core-core repulsion = 14057.038931 eV Total energy + Delta-G solvation = -2415.737991 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.30086 -38.16086 -34.68779 -33.99022 -32.42597 -29.09040 -27.61417 -27.09790 -24.99728 -22.89323 -21.98319 -20.85473 -20.17750 -17.96002 -17.46362 -16.54197 -16.43555 -16.07710 -15.49982 -15.13511 -14.85489 -14.19585 -13.90208 -13.52800 -13.32820 -12.98532 -12.83730 -12.81231 -12.65755 -12.28311 -12.15535 -11.91546 -11.81110 -11.68833 -11.49413 -11.04013 -10.92522 -10.47371 -9.87956 -9.54049 -8.82863 -7.88709 -5.96250 1.44237 1.48044 1.56484 2.52250 3.13002 3.39122 3.68070 3.72550 3.77908 3.94424 4.18366 4.37370 4.45257 4.54558 4.67243 4.69506 4.76392 4.85774 4.87900 4.95309 4.97413 5.01772 5.11207 5.16096 5.19251 5.32512 5.39261 5.52564 5.55737 5.66187 6.05307 6.28361 6.43445 6.52712 6.67146 6.70871 7.02464 7.64322 9.11439 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.024731 B = 0.010846 C = 0.008674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.899463 B = 2580.952365 C = 3227.138016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 H 0.071 0.929 4 C 0.056 3.944 5 N -0.495 5.495 6 C 0.112 3.888 7 C 0.041 3.959 8 C -0.491 4.491 9 H 0.038 0.962 10 C 0.052 3.948 11 N -0.893 5.893 12 Si 0.941 3.059 13 H -0.282 1.282 14 H -0.285 1.285 15 H -0.277 1.277 16 C -0.210 4.210 17 C -0.195 4.195 18 C 0.051 3.949 19 C 0.091 3.909 20 H 0.048 0.952 21 N -0.842 5.842 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.029 0.971 26 H 0.052 0.948 27 H -0.010 1.010 28 H 0.084 0.916 29 H 0.255 0.745 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.035 0.965 35 H 0.055 0.945 36 H 0.346 0.654 37 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.015 0.636 8.287 12.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.107 4.107 3 H 0.089 0.911 4 C -0.072 4.072 5 N -0.218 5.218 6 C -0.016 4.016 7 C 0.040 3.960 8 C -0.528 4.528 9 H 0.057 0.943 10 C -0.149 4.149 11 N -0.530 5.530 12 Si 0.769 3.231 13 H -0.209 1.209 14 H -0.211 1.211 15 H -0.202 1.202 16 C -0.248 4.248 17 C -0.232 4.232 18 C -0.077 4.077 19 C -0.021 4.021 20 H 0.066 0.934 21 N -0.376 5.376 22 H 0.085 0.915 23 H 0.090 0.910 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.008 0.992 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.159 0.841 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.732 0.826 7.371 11.457 hybrid contribution 0.408 0.478 0.549 0.835 sum -8.323 1.305 7.920 11.563 Atomic orbital electron populations 1.21607 0.92497 1.02631 1.02096 1.22096 0.97115 0.98047 0.93431 0.91065 1.23032 0.89198 0.97441 0.97577 1.64466 1.21424 1.34750 1.01140 1.21564 0.93252 0.87659 0.99159 1.19039 0.92357 0.88614 0.95947 1.20438 1.09914 1.05759 1.16735 0.94333 1.25268 0.94811 0.99570 0.95220 1.69921 1.31814 1.37920 1.13392 0.85841 0.78021 0.81563 0.77696 1.20862 1.21066 1.20192 1.22970 1.01439 1.02278 0.98159 1.22858 1.02206 1.07318 0.90803 1.22842 0.96632 0.97547 0.90722 1.22029 0.91368 0.92686 0.95999 0.93365 1.58800 1.07328 1.30083 1.41376 0.91486 0.90996 0.92624 0.95239 0.92955 0.99176 0.89806 0.93519 0.90898 0.91207 0.90953 0.90285 0.94634 0.92622 0.84054 0.83198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.03 71.98 0.58 -2.41 16 2 C -0.09 -2.66 3.63 -9.59 -0.03 -2.70 16 3 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 4 C 0.06 2.18 5.92 86.65 0.51 2.69 16 5 N -0.50 -22.05 4.76 -883.02 -4.20 -26.25 16 6 C 0.11 5.46 3.92 86.30 0.34 5.80 16 7 C 0.04 2.09 1.84 -52.92 -0.10 1.99 16 8 C -0.49 -27.50 8.72 25.60 0.22 -27.27 16 9 H 0.04 2.20 7.83 -2.91 -0.02 2.18 16 10 C 0.05 2.89 5.15 84.66 0.44 3.32 16 11 N -0.89 -50.06 10.74 21.45 0.23 -49.83 16 12 Si 0.94 44.63 29.55 68.60 2.03 46.65 16 13 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 14 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 15 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 16 C -0.21 -9.83 9.96 30.62 0.30 -9.52 16 17 C -0.19 -8.64 9.65 30.62 0.30 -8.34 16 18 C 0.05 1.94 5.98 86.45 0.52 2.46 16 19 C 0.09 2.66 4.05 45.80 0.19 2.84 16 20 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 21 N -0.84 -19.44 8.29 -165.03 -1.37 -20.81 16 22 H 0.07 1.57 7.17 -2.39 -0.02 1.56 16 23 H 0.07 1.28 7.83 -2.38 -0.02 1.26 16 24 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.03 1.15 7.93 -2.39 -0.02 1.14 16 26 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 27 H -0.01 -0.46 7.51 -2.39 -0.02 -0.48 16 28 H 0.08 4.57 5.90 -2.39 -0.01 4.56 16 29 H 0.26 13.80 8.32 -92.71 -0.77 13.03 16 30 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 31 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 32 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 33 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.04 1.36 7.21 -2.39 -0.02 1.35 16 35 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.35 6.97 9.08 -89.70 -0.81 6.16 16 37 H 0.35 6.42 7.15 -89.69 -0.64 5.78 16 Total: -1.00 -59.76 290.69 -0.46 -60.22 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -0.41 Total: 21.16 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 3.26 Total: -31.14 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -5.34 Total: -96.89 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -59.76 -0.46 -60.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235353519.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.692 kcal (2) G-P(sol) polarization free energy of solvation -59.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds