Wall clock time and date at job start Mon Mar 30 2020 03:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.48979 * 2 1 4 4 C 1.53051 * 109.48811 * 120.04374 * 2 1 3 5 5 N 1.46962 * 109.36362 * 178.36927 * 4 2 1 6 6 C 1.46904 * 111.00047 * 176.81562 * 5 4 2 7 7 C 1.46963 * 110.87920 * 300.67627 * 5 4 2 8 8 C 1.53055 * 109.36027 * 59.32102 * 7 5 4 9 9 H 1.09005 * 109.48848 * 61.56937 * 8 7 5 10 10 C 1.50703 * 109.48608 * 181.60631 * 8 7 5 11 11 H 1.07998 * 119.99410 * 120.00117 * 10 8 7 12 12 C 1.37874 * 120.00023 * 299.99927 * 10 8 7 13 13 N 1.31519 * 119.99820 * 179.97438 * 12 10 8 14 14 Si 1.86802 * 120.00130 * 0.02562 * 12 10 8 15 15 H 1.48502 * 109.47244 * 89.99638 * 14 12 10 16 16 H 1.48496 * 109.46924 * 209.99704 * 14 12 10 17 17 H 1.48501 * 109.47037 * 329.99638 * 14 12 10 18 18 N 1.46950 * 109.36520 * 301.59852 * 8 7 5 19 19 C 1.46909 * 110.99896 * 183.18919 * 18 8 7 20 20 C 1.53002 * 117.49736 * 350.23592 * 19 18 8 21 21 C 1.52999 * 117.49858 * 281.57317 * 19 18 8 22 22 H 1.09008 * 109.47210 * 299.95187 * 1 2 3 23 23 H 1.08994 * 109.47345 * 59.95509 * 1 2 3 24 24 H 1.09000 * 109.47400 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.49107 * 298.33612 * 4 2 1 26 26 H 1.09005 * 109.49116 * 58.40286 * 4 2 1 27 27 H 1.08993 * 109.47402 * 59.99425 * 6 5 4 28 28 H 1.08997 * 109.47081 * 179.97438 * 6 5 4 29 29 H 1.09003 * 109.46635 * 299.99634 * 6 5 4 30 30 H 1.08994 * 109.48741 * 179.28410 * 7 5 4 31 31 H 1.08998 * 109.49011 * 299.35741 * 7 5 4 32 32 H 0.96999 * 119.99760 * 180.02562 * 13 12 10 33 33 H 1.08996 * 115.54695 * 135.90640 * 19 18 8 34 34 H 1.09000 * 117.49799 * 359.97438 * 20 19 18 35 35 H 1.08990 * 117.49747 * 145.01997 * 20 19 18 36 36 H 1.08994 * 117.49863 * 214.97746 * 21 19 18 37 37 H 1.08998 * 117.49577 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0406 -0.7224 1.2490 5 7 3.5097 -0.7550 1.2266 6 6 4.0411 -1.3748 2.4479 7 6 3.9999 -1.4492 0.0276 8 6 3.4893 -0.7268 -1.2213 9 1 3.8756 0.2924 -1.2354 10 6 3.9577 -1.4590 -2.4524 11 1 3.2366 -1.8589 -3.1499 12 6 5.3067 -1.6182 -2.6883 13 7 5.7155 -2.2577 -3.7624 14 14 6.5539 -0.9271 -1.4815 15 1 6.8660 -1.9505 -0.4517 16 1 7.7961 -0.5615 -2.2085 17 1 5.9911 0.2802 -0.8250 18 7 2.0203 -0.6941 -1.1989 19 6 1.4888 -0.0744 -2.4203 20 6 2.4858 0.6146 -3.3543 21 6 1.5224 1.4526 -2.5098 22 1 -0.3634 0.5131 0.8905 23 1 -0.3634 0.5145 -0.8895 24 1 -0.3634 -1.0276 -0.0005 25 1 1.7021 -0.1926 2.1394 26 1 1.6543 -1.7416 1.2631 27 1 3.6700 -2.3965 2.5280 28 1 5.1302 -1.3865 2.4050 29 1 3.7175 -0.8015 3.3166 30 1 5.0899 -1.4491 0.0276 31 1 3.6359 -2.4766 0.0278 32 1 6.6646 -2.3701 -3.9282 33 1 0.6423 -0.5868 -2.8773 34 1 3.5359 0.6084 -3.0623 35 1 2.2949 0.5558 -4.4257 36 1 0.6983 1.9447 -3.0262 37 1 1.9385 1.9974 -1.6624 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251673295.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:26 Heat of formation + Delta-G solvation = 56.998861 kcal Electronic energy + Delta-G solvation = -16924.948319 eV Core-core repulsion = 14510.880909 eV Total energy + Delta-G solvation = -2414.067410 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.44431 -36.44680 -33.42919 -32.89624 -31.04241 -27.55185 -26.67695 -25.40241 -22.55309 -21.74181 -20.66208 -20.52003 -18.20358 -16.68120 -16.03779 -15.09714 -14.73259 -14.59806 -13.96598 -13.86368 -13.68092 -12.91097 -12.52677 -12.27544 -11.94649 -11.75172 -11.48015 -11.40485 -11.28088 -11.04902 -10.61759 -10.32338 -10.12652 -10.02409 -9.74219 -9.56963 -9.18766 -9.00145 -8.56607 -7.83705 -7.33096 -6.09243 -4.05150 3.23388 3.36624 3.41810 4.35985 4.47601 4.57261 4.69491 5.19450 5.31592 5.49426 5.60761 5.69952 5.72884 5.78183 5.79989 5.82090 5.91743 6.04231 6.07669 6.11164 6.21851 6.28714 6.41499 6.45574 6.56464 6.64826 6.74843 6.81052 7.10924 7.28788 7.39419 7.55487 7.68798 7.95272 8.11780 8.64408 9.01484 9.51406 11.03063 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.022463 B = 0.015188 C = 0.010112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.210389 B = 1843.119404 C = 2768.453044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.080 3.920 3 H 0.042 0.958 4 C 0.067 3.933 5 N -0.554 5.554 6 C 0.026 3.974 7 C 0.054 3.946 8 C 0.190 3.810 9 H 0.009 0.991 10 C -0.494 4.494 11 H 0.087 0.913 12 C 0.071 3.929 13 N -0.895 5.895 14 Si 0.870 3.130 15 H -0.280 1.280 16 H -0.295 1.295 17 H -0.260 1.260 18 N -0.494 5.494 19 C 0.043 3.957 20 C -0.156 4.156 21 C -0.234 4.234 22 H 0.049 0.951 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.037 0.963 27 H 0.022 0.978 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.264 0.736 33 H 0.107 0.893 34 H 0.124 0.876 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.926 4.692 8.071 11.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 H 0.060 0.940 4 C -0.062 4.062 5 N -0.278 5.278 6 C -0.123 4.123 7 C -0.073 4.073 8 C 0.082 3.918 9 H 0.026 0.974 10 C -0.533 4.533 11 H 0.105 0.895 12 C -0.131 4.131 13 N -0.533 5.533 14 Si 0.700 3.300 15 H -0.207 1.207 16 H -0.222 1.222 17 H -0.185 1.185 18 N -0.218 5.218 19 C -0.066 4.066 20 C -0.193 4.193 21 C -0.273 4.273 22 H 0.068 0.932 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.056 0.944 27 H 0.040 0.960 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.124 0.876 34 H 0.142 0.858 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.754 4.609 7.986 11.429 hybrid contribution 0.895 0.202 0.678 1.141 sum -5.859 4.810 8.664 11.512 Atomic orbital electron populations 1.21762 0.94802 1.01955 1.01128 1.21617 0.94545 0.96042 0.90662 0.94017 1.22125 0.87641 0.99224 0.97175 1.62279 1.08276 1.54328 1.02905 1.22308 1.00294 0.96844 0.92832 1.22801 0.98646 0.96795 0.89055 1.19808 0.83427 0.95265 0.93296 0.97384 1.20920 0.92511 1.35008 1.04837 0.89522 1.24885 0.98041 0.94989 0.95181 1.69867 1.15364 1.41684 1.26359 0.87107 0.81248 0.80534 0.81084 1.20673 1.22248 1.18459 1.62165 1.10632 1.49932 0.99087 1.22393 1.00505 0.89387 0.94293 1.23450 0.98966 1.00470 0.96453 1.23450 1.03922 0.95821 1.04078 0.93178 0.92169 0.92313 0.91478 0.94435 0.95951 0.91993 0.92059 0.92006 0.94024 0.92594 0.87580 0.85797 0.89803 0.90006 0.89849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.01 37.16 0.33 -1.66 16 2 C 0.08 1.43 2.15 -67.66 -0.15 1.28 16 3 H 0.04 0.79 6.59 -51.93 -0.34 0.45 16 4 C 0.07 1.15 4.90 -3.76 -0.02 1.13 16 5 N -0.55 -10.78 4.97 -242.74 -1.21 -11.98 16 6 C 0.03 0.41 9.60 60.07 0.58 0.99 16 7 C 0.05 1.23 4.36 -3.76 -0.02 1.22 16 8 C 0.19 4.51 1.00 -68.81 -0.07 4.44 16 9 H 0.01 0.22 6.15 -51.93 -0.32 -0.10 16 10 C -0.49 -13.35 6.36 -34.44 -0.22 -13.56 16 11 H 0.09 2.57 7.32 -52.49 -0.38 2.19 16 12 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 13 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 14 Si 0.87 21.59 24.36 -169.99 -4.14 17.45 16 15 H -0.28 -6.80 6.88 56.52 0.39 -6.41 16 16 H -0.30 -7.35 7.11 56.52 0.40 -6.94 16 17 H -0.26 -6.38 6.53 56.52 0.37 -6.01 16 18 N -0.49 -10.35 4.58 -212.06 -0.97 -11.32 16 19 C 0.04 0.84 4.40 -67.71 -0.30 0.54 16 20 C -0.16 -3.16 8.25 -26.69 -0.22 -3.38 16 21 C -0.23 -4.04 9.08 -26.69 -0.24 -4.28 16 22 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 23 H 0.06 0.85 6.61 -51.93 -0.34 0.51 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 1.47 3.30 -51.93 -0.17 1.30 16 31 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.11 1.96 8.14 -51.93 -0.42 1.53 16 34 H 0.12 2.91 5.06 -51.93 -0.26 2.65 16 35 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.08 1.49 6.72 -51.93 -0.35 1.14 16 LS Contribution 272.55 15.07 4.11 4.11 Total: -1.00 -28.87 272.55 -7.85 -36.72 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.00 Total: 2.24 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -0.41 Total: -11.40 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: -1.40 Total: -49.12 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.14 Total: 17.45 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.87 -7.85 -36.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251673295.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.720 kcal (2) G-P(sol) polarization free energy of solvation -28.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds