Wall clock time and date at job start Mon Mar 30 2020 03:24:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08995 * 109.48979 * 2 1
4 4 C 1.53051 * 109.48811 * 120.04374 * 2 1 3
5 5 N 1.46962 * 109.36362 * 178.36927 * 4 2 1
6 6 C 1.46904 * 111.00047 * 176.81562 * 5 4 2
7 7 C 1.46963 * 110.87920 * 300.67627 * 5 4 2
8 8 C 1.53055 * 109.36027 * 59.32102 * 7 5 4
9 9 H 1.09005 * 109.48848 * 61.56937 * 8 7 5
10 10 C 1.50703 * 109.48608 * 181.60631 * 8 7 5
11 11 H 1.07998 * 119.99410 * 120.00117 * 10 8 7
12 12 C 1.37874 * 120.00023 * 299.99927 * 10 8 7
13 13 N 1.31519 * 119.99820 * 179.97438 * 12 10 8
14 14 Si 1.86802 * 120.00130 * 0.02562 * 12 10 8
15 15 H 1.48502 * 109.47244 * 89.99638 * 14 12 10
16 16 H 1.48496 * 109.46924 * 209.99704 * 14 12 10
17 17 H 1.48501 * 109.47037 * 329.99638 * 14 12 10
18 18 N 1.46950 * 109.36520 * 301.59852 * 8 7 5
19 19 C 1.46909 * 110.99896 * 183.18919 * 18 8 7
20 20 C 1.53002 * 117.49736 * 350.23592 * 19 18 8
21 21 C 1.52999 * 117.49858 * 281.57317 * 19 18 8
22 22 H 1.09008 * 109.47210 * 299.95187 * 1 2 3
23 23 H 1.08994 * 109.47345 * 59.95509 * 1 2 3
24 24 H 1.09000 * 109.47400 * 179.97438 * 1 2 3
25 25 H 1.08997 * 109.49107 * 298.33612 * 4 2 1
26 26 H 1.09005 * 109.49116 * 58.40286 * 4 2 1
27 27 H 1.08993 * 109.47402 * 59.99425 * 6 5 4
28 28 H 1.08997 * 109.47081 * 179.97438 * 6 5 4
29 29 H 1.09003 * 109.46635 * 299.99634 * 6 5 4
30 30 H 1.08994 * 109.48741 * 179.28410 * 7 5 4
31 31 H 1.08998 * 109.49011 * 299.35741 * 7 5 4
32 32 H 0.96999 * 119.99760 * 180.02562 * 13 12 10
33 33 H 1.08996 * 115.54695 * 135.90640 * 19 18 8
34 34 H 1.09000 * 117.49799 * 359.97438 * 20 19 18
35 35 H 1.08990 * 117.49747 * 145.01997 * 20 19 18
36 36 H 1.08994 * 117.49863 * 214.97746 * 21 19 18
37 37 H 1.08998 * 117.49577 * 359.97438 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8936 1.0275 0.0000
4 6 2.0406 -0.7224 1.2490
5 7 3.5097 -0.7550 1.2266
6 6 4.0411 -1.3748 2.4479
7 6 3.9999 -1.4492 0.0276
8 6 3.4893 -0.7268 -1.2213
9 1 3.8756 0.2924 -1.2354
10 6 3.9577 -1.4590 -2.4524
11 1 3.2366 -1.8589 -3.1499
12 6 5.3067 -1.6182 -2.6883
13 7 5.7155 -2.2577 -3.7624
14 14 6.5539 -0.9271 -1.4815
15 1 6.8660 -1.9505 -0.4517
16 1 7.7961 -0.5615 -2.2085
17 1 5.9911 0.2802 -0.8250
18 7 2.0203 -0.6941 -1.1989
19 6 1.4888 -0.0744 -2.4203
20 6 2.4858 0.6146 -3.3543
21 6 1.5224 1.4526 -2.5098
22 1 -0.3634 0.5131 0.8905
23 1 -0.3634 0.5145 -0.8895
24 1 -0.3634 -1.0276 -0.0005
25 1 1.7021 -0.1926 2.1394
26 1 1.6543 -1.7416 1.2631
27 1 3.6700 -2.3965 2.5280
28 1 5.1302 -1.3865 2.4050
29 1 3.7175 -0.8015 3.3166
30 1 5.0899 -1.4491 0.0276
31 1 3.6359 -2.4766 0.0278
32 1 6.6646 -2.3701 -3.9282
33 1 0.6423 -0.5868 -2.8773
34 1 3.5359 0.6084 -3.0623
35 1 2.2949 0.5558 -4.4257
36 1 0.6983 1.9447 -3.0262
37 1 1.9385 1.9974 -1.6624
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000251673295.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:24:26
Heat of formation + Delta-G solvation = 56.998861 kcal
Electronic energy + Delta-G solvation = -16924.948319 eV
Core-core repulsion = 14510.880909 eV
Total energy + Delta-G solvation = -2414.067410 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 224.158 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-39.44431 -36.44680 -33.42919 -32.89624 -31.04241 -27.55185 -26.67695 -25.40241
-22.55309 -21.74181 -20.66208 -20.52003 -18.20358 -16.68120 -16.03779 -15.09714
-14.73259 -14.59806 -13.96598 -13.86368 -13.68092 -12.91097 -12.52677 -12.27544
-11.94649 -11.75172 -11.48015 -11.40485 -11.28088 -11.04902 -10.61759 -10.32338
-10.12652 -10.02409 -9.74219 -9.56963 -9.18766 -9.00145 -8.56607 -7.83705
-7.33096 -6.09243 -4.05150 3.23388 3.36624 3.41810 4.35985 4.47601
4.57261 4.69491 5.19450 5.31592 5.49426 5.60761 5.69952 5.72884
5.78183 5.79989 5.82090 5.91743 6.04231 6.07669 6.11164 6.21851
6.28714 6.41499 6.45574 6.56464 6.64826 6.74843 6.81052 7.10924
7.28788 7.39419 7.55487 7.68798 7.95272 8.11780 8.64408 9.01484
9.51406 11.03063
Molecular weight = 224.16amu
Principal moments of inertia in cm(-1)
A = 0.022463 B = 0.015188 C = 0.010112
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1246.210389 B = 1843.119404 C = 2768.453044
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C 0.080 3.920
3 H 0.042 0.958
4 C 0.067 3.933
5 N -0.554 5.554
6 C 0.026 3.974
7 C 0.054 3.946
8 C 0.190 3.810
9 H 0.009 0.991
10 C -0.494 4.494
11 H 0.087 0.913
12 C 0.071 3.929
13 N -0.895 5.895
14 Si 0.870 3.130
15 H -0.280 1.280
16 H -0.295 1.295
17 H -0.260 1.260
18 N -0.494 5.494
19 C 0.043 3.957
20 C -0.156 4.156
21 C -0.234 4.234
22 H 0.049 0.951
23 H 0.059 0.941
24 H 0.058 0.942
25 H 0.067 0.933
26 H 0.037 0.963
27 H 0.022 0.978
28 H 0.061 0.939
29 H 0.061 0.939
30 H 0.062 0.938
31 H 0.041 0.959
32 H 0.264 0.736
33 H 0.107 0.893
34 H 0.124 0.876
35 H 0.083 0.917
36 H 0.081 0.919
37 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.926 4.692 8.071 11.624
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.029 4.029
3 H 0.060 0.940
4 C -0.062 4.062
5 N -0.278 5.278
6 C -0.123 4.123
7 C -0.073 4.073
8 C 0.082 3.918
9 H 0.026 0.974
10 C -0.533 4.533
11 H 0.105 0.895
12 C -0.131 4.131
13 N -0.533 5.533
14 Si 0.700 3.300
15 H -0.207 1.207
16 H -0.222 1.222
17 H -0.185 1.185
18 N -0.218 5.218
19 C -0.066 4.066
20 C -0.193 4.193
21 C -0.273 4.273
22 H 0.068 0.932
23 H 0.078 0.922
24 H 0.077 0.923
25 H 0.085 0.915
26 H 0.056 0.944
27 H 0.040 0.960
28 H 0.080 0.920
29 H 0.079 0.921
30 H 0.080 0.920
31 H 0.060 0.940
32 H 0.074 0.926
33 H 0.124 0.876
34 H 0.142 0.858
35 H 0.102 0.898
36 H 0.100 0.900
37 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -6.754 4.609 7.986 11.429
hybrid contribution 0.895 0.202 0.678 1.141
sum -5.859 4.810 8.664 11.512
Atomic orbital electron populations
1.21762 0.94802 1.01955 1.01128 1.21617 0.94545 0.96042 0.90662
0.94017 1.22125 0.87641 0.99224 0.97175 1.62279 1.08276 1.54328
1.02905 1.22308 1.00294 0.96844 0.92832 1.22801 0.98646 0.96795
0.89055 1.19808 0.83427 0.95265 0.93296 0.97384 1.20920 0.92511
1.35008 1.04837 0.89522 1.24885 0.98041 0.94989 0.95181 1.69867
1.15364 1.41684 1.26359 0.87107 0.81248 0.80534 0.81084 1.20673
1.22248 1.18459 1.62165 1.10632 1.49932 0.99087 1.22393 1.00505
0.89387 0.94293 1.23450 0.98966 1.00470 0.96453 1.23450 1.03922
0.95821 1.04078 0.93178 0.92169 0.92313 0.91478 0.94435 0.95951
0.91993 0.92059 0.92006 0.94024 0.92594 0.87580 0.85797 0.89803
0.90006 0.89849
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.99 9.01 37.16 0.33 -1.66 16
2 C 0.08 1.43 2.15 -67.66 -0.15 1.28 16
3 H 0.04 0.79 6.59 -51.93 -0.34 0.45 16
4 C 0.07 1.15 4.90 -3.76 -0.02 1.13 16
5 N -0.55 -10.78 4.97 -242.74 -1.21 -11.98 16
6 C 0.03 0.41 9.60 60.07 0.58 0.99 16
7 C 0.05 1.23 4.36 -3.76 -0.02 1.22 16
8 C 0.19 4.51 1.00 -68.81 -0.07 4.44 16
9 H 0.01 0.22 6.15 -51.93 -0.32 -0.10 16
10 C -0.49 -13.35 6.36 -34.44 -0.22 -13.56 16
11 H 0.09 2.57 7.32 -52.49 -0.38 2.19 16
12 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16
13 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16
14 Si 0.87 21.59 24.36 -169.99 -4.14 17.45 16
15 H -0.28 -6.80 6.88 56.52 0.39 -6.41 16
16 H -0.30 -7.35 7.11 56.52 0.40 -6.94 16
17 H -0.26 -6.38 6.53 56.52 0.37 -6.01 16
18 N -0.49 -10.35 4.58 -212.06 -0.97 -11.32 16
19 C 0.04 0.84 4.40 -67.71 -0.30 0.54 16
20 C -0.16 -3.16 8.25 -26.69 -0.22 -3.38 16
21 C -0.23 -4.04 9.08 -26.69 -0.24 -4.28 16
22 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16
23 H 0.06 0.85 6.61 -51.93 -0.34 0.51 16
24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
25 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16
26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16
27 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16
28 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16
29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16
30 H 0.06 1.47 3.30 -51.93 -0.17 1.30 16
31 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16
32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
33 H 0.11 1.96 8.14 -51.93 -0.42 1.53 16
34 H 0.12 2.91 5.06 -51.93 -0.26 2.65 16
35 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16
36 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16
37 H 0.08 1.49 6.72 -51.93 -0.35 1.14 16
LS Contribution 272.55 15.07 4.11 4.11
Total: -1.00 -28.87 272.55 -7.85 -36.72
By element:
Atomic # 1 Polarization: 8.24 SS G_CDS: -6.00 Total: 2.24 kcal
Atomic # 6 Polarization: -10.98 SS G_CDS: -0.41 Total: -11.40 kcal
Atomic # 7 Polarization: -47.72 SS G_CDS: -1.40 Total: -49.12 kcal
Atomic # 14 Polarization: 21.59 SS G_CDS: -4.14 Total: 17.45 kcal
Total LS contribution 4.11 Total: 4.11 kcal
Total: -28.87 -7.85 -36.72 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000251673295.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.720 kcal
(2) G-P(sol) polarization free energy of solvation -28.869 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.851 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.721 kcal
(6) G-S(sol) free energy of system = (1) + (5) 56.999 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds