Wall clock time and date at job start Mon Mar 30 2020 03:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.48979 * 2 1 4 4 C 1.53051 * 109.48811 * 120.04374 * 2 1 3 5 5 N 1.46962 * 109.36362 * 178.36927 * 4 2 1 6 6 C 1.46904 * 111.00047 * 176.81562 * 5 4 2 7 7 C 1.46963 * 110.87920 * 300.67627 * 5 4 2 8 8 C 1.53055 * 109.36027 * 59.32102 * 7 5 4 9 9 H 1.09005 * 109.48848 * 61.56937 * 8 7 5 10 10 C 1.50703 * 109.48608 * 181.60631 * 8 7 5 11 11 H 1.07998 * 119.99410 * 120.00117 * 10 8 7 12 12 C 1.37874 * 120.00023 * 299.99927 * 10 8 7 13 13 N 1.31519 * 119.99820 * 179.97438 * 12 10 8 14 14 Si 1.86802 * 120.00130 * 0.02562 * 12 10 8 15 15 H 1.48502 * 109.47244 * 89.99638 * 14 12 10 16 16 H 1.48496 * 109.46924 * 209.99704 * 14 12 10 17 17 H 1.48501 * 109.47037 * 329.99638 * 14 12 10 18 18 N 1.46950 * 109.36520 * 301.59852 * 8 7 5 19 19 C 1.46909 * 110.99896 * 183.18919 * 18 8 7 20 20 C 1.53002 * 117.49736 * 350.23592 * 19 18 8 21 21 C 1.52999 * 117.49858 * 281.57317 * 19 18 8 22 22 H 1.09008 * 109.47210 * 299.95187 * 1 2 3 23 23 H 1.08994 * 109.47345 * 59.95509 * 1 2 3 24 24 H 1.09000 * 109.47400 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.49107 * 298.33612 * 4 2 1 26 26 H 1.09005 * 109.49116 * 58.40286 * 4 2 1 27 27 H 1.08993 * 109.47402 * 59.99425 * 6 5 4 28 28 H 1.08997 * 109.47081 * 179.97438 * 6 5 4 29 29 H 1.09003 * 109.46635 * 299.99634 * 6 5 4 30 30 H 1.08994 * 109.48741 * 179.28410 * 7 5 4 31 31 H 1.08998 * 109.49011 * 299.35741 * 7 5 4 32 32 H 0.96999 * 119.99760 * 180.02562 * 13 12 10 33 33 H 1.08996 * 115.54695 * 135.90640 * 19 18 8 34 34 H 1.09000 * 117.49799 * 359.97438 * 20 19 18 35 35 H 1.08990 * 117.49747 * 145.01997 * 20 19 18 36 36 H 1.08994 * 117.49863 * 214.97746 * 21 19 18 37 37 H 1.08998 * 117.49577 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0406 -0.7224 1.2490 5 7 3.5097 -0.7550 1.2266 6 6 4.0411 -1.3748 2.4479 7 6 3.9999 -1.4492 0.0276 8 6 3.4893 -0.7268 -1.2213 9 1 3.8756 0.2924 -1.2354 10 6 3.9577 -1.4590 -2.4524 11 1 3.2366 -1.8589 -3.1499 12 6 5.3067 -1.6182 -2.6883 13 7 5.7155 -2.2577 -3.7624 14 14 6.5539 -0.9271 -1.4815 15 1 6.8660 -1.9505 -0.4517 16 1 7.7961 -0.5615 -2.2085 17 1 5.9911 0.2802 -0.8250 18 7 2.0203 -0.6941 -1.1989 19 6 1.4888 -0.0744 -2.4203 20 6 2.4858 0.6146 -3.3543 21 6 1.5224 1.4526 -2.5098 22 1 -0.3634 0.5131 0.8905 23 1 -0.3634 0.5145 -0.8895 24 1 -0.3634 -1.0276 -0.0005 25 1 1.7021 -0.1926 2.1394 26 1 1.6543 -1.7416 1.2631 27 1 3.6700 -2.3965 2.5280 28 1 5.1302 -1.3865 2.4050 29 1 3.7175 -0.8015 3.3166 30 1 5.0899 -1.4491 0.0276 31 1 3.6359 -2.4766 0.0278 32 1 6.6646 -2.3701 -3.9282 33 1 0.6423 -0.5868 -2.8773 34 1 3.5359 0.6084 -3.0623 35 1 2.2949 0.5558 -4.4257 36 1 0.6983 1.9447 -3.0262 37 1 1.9385 1.9974 -1.6624 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251673295.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:26 Heat of formation + Delta-G solvation = 35.206347 kcal Electronic energy + Delta-G solvation = -16925.893313 eV Core-core repulsion = 14510.880909 eV Total energy + Delta-G solvation = -2415.012404 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.02715 -37.95425 -35.28632 -34.44297 -32.90091 -29.14322 -27.97260 -27.22414 -24.06412 -23.42193 -22.25059 -22.07019 -19.79565 -18.76535 -17.65788 -16.82145 -16.19988 -16.13219 -15.77090 -15.39717 -15.22611 -14.71696 -14.24021 -13.63296 -13.38367 -13.21675 -13.00409 -12.87181 -12.77595 -12.53653 -12.36826 -12.21529 -11.73206 -11.58781 -11.39856 -11.30444 -11.11510 -10.69034 -10.62862 -9.34481 -8.97176 -8.28091 -6.25858 1.23085 1.31889 1.41670 2.28130 2.93908 3.04602 3.10759 3.18308 3.91620 4.09811 4.17999 4.21775 4.23356 4.34031 4.43932 4.45619 4.56507 4.64176 4.64748 4.81211 4.84760 4.85314 4.91445 5.02641 5.16130 5.20281 5.22554 5.31488 5.43672 5.54136 5.61122 5.99484 6.07538 6.12805 6.45391 6.71066 6.79046 7.33710 8.87960 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.022463 B = 0.015188 C = 0.010112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.210389 B = 1843.119404 C = 2768.453044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.076 3.924 3 H 0.034 0.966 4 C 0.066 3.934 5 N -0.565 5.565 6 C 0.024 3.976 7 C 0.062 3.938 8 C 0.200 3.800 9 H -0.010 1.010 10 C -0.480 4.480 11 H 0.049 0.951 12 C 0.021 3.979 13 N -0.940 5.940 14 Si 0.928 3.072 15 H -0.270 1.270 16 H -0.296 1.296 17 H -0.256 1.256 18 N -0.508 5.508 19 C 0.033 3.967 20 C -0.182 4.182 21 C -0.193 4.193 22 H 0.079 0.921 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.103 0.897 26 H 0.034 0.966 27 H 0.027 0.973 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.024 0.976 32 H 0.265 0.735 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.428 6.026 10.449 14.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.033 4.033 3 H 0.052 0.948 4 C -0.062 4.062 5 N -0.289 5.289 6 C -0.124 4.124 7 C -0.067 4.067 8 C 0.091 3.909 9 H 0.007 0.993 10 C -0.519 4.519 11 H 0.067 0.933 12 C -0.177 4.177 13 N -0.581 5.581 14 Si 0.757 3.243 15 H -0.196 1.196 16 H -0.223 1.223 17 H -0.181 1.181 18 N -0.232 5.232 19 C -0.076 4.076 20 C -0.220 4.220 21 C -0.231 4.231 22 H 0.098 0.902 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.121 0.879 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.134 0.866 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.134 0.866 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.280 5.950 10.392 14.558 hybrid contribution 1.264 -0.205 -0.079 1.283 sum -7.016 5.745 10.313 13.733 Atomic orbital electron populations 1.21703 0.91847 1.02368 1.02784 1.21817 0.96834 0.95204 0.89404 0.94767 1.22269 0.86150 0.99499 0.98290 1.62256 1.09876 1.54079 1.02704 1.22418 1.00154 0.97594 0.92229 1.22481 0.97749 0.95926 0.90495 1.19488 0.85562 0.93505 0.92302 0.99257 1.20996 0.91760 1.33784 1.05404 0.93290 1.25537 0.99940 0.95572 0.96650 1.69995 1.15732 1.43973 1.28420 0.86159 0.78834 0.80117 0.79209 1.19620 1.22320 1.18084 1.62125 1.08596 1.51524 1.00998 1.22512 1.00182 0.91204 0.93668 1.23252 0.97539 1.03961 0.97201 1.23420 1.02847 0.94282 1.02575 0.90178 0.91880 0.92510 0.87912 0.94770 0.95409 0.92330 0.88819 0.93338 0.95722 0.92607 0.86570 0.89590 0.89420 0.86614 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 9.01 71.98 0.65 -2.59 16 2 C 0.08 2.50 2.15 44.92 0.10 2.59 16 3 H 0.03 1.20 6.59 -2.39 -0.02 1.18 16 4 C 0.07 2.05 4.90 86.31 0.42 2.47 16 5 N -0.56 -20.68 4.97 -921.90 -4.58 -25.26 16 6 C 0.02 0.69 9.60 127.69 1.23 1.92 16 7 C 0.06 2.77 4.36 86.31 0.38 3.15 16 8 C 0.20 9.57 1.00 44.18 0.04 9.62 16 9 H -0.01 -0.51 6.15 -2.38 -0.01 -0.53 16 10 C -0.48 -26.94 6.36 25.60 0.16 -26.78 16 11 H 0.05 3.06 7.32 -2.91 -0.02 3.04 16 12 C 0.02 1.20 5.45 84.65 0.46 1.66 16 13 N -0.94 -58.11 13.96 21.45 0.30 -57.81 16 14 Si 0.93 45.69 24.36 68.60 1.67 47.36 16 15 H -0.27 -12.73 6.88 99.48 0.68 -12.04 16 16 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 17 H -0.26 -12.33 6.53 99.48 0.65 -11.68 16 18 N -0.51 -20.94 4.58 -824.83 -3.78 -24.72 16 19 C 0.03 1.26 4.40 44.91 0.20 1.46 16 20 C -0.18 -7.47 8.25 30.62 0.25 -7.21 16 21 C -0.19 -6.25 9.08 30.62 0.28 -5.97 16 22 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 23 H 0.06 1.54 6.61 -2.39 -0.02 1.53 16 24 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 1.73 8.13 -2.39 -0.02 1.71 16 29 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.05 2.29 3.30 -2.39 -0.01 2.28 16 31 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 33 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 34 H 0.09 4.21 5.06 -2.39 -0.01 4.20 16 35 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 36 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 37 H 0.08 2.71 6.72 -2.39 -0.02 2.70 16 Total: -1.00 -64.43 272.55 -1.27 -65.70 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.95 Total: 14.39 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: 4.17 Total: -19.67 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -8.06 Total: -107.79 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.67 Total: 47.36 kcal Total: -64.43 -1.27 -65.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251673295.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.906 kcal (2) G-P(sol) polarization free energy of solvation -64.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds