Wall clock time and date at job start Mon Mar 30 2020 03:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50694 * 119.99888 * 2 1 4 4 N 1.46899 * 109.47319 * 124.99840 * 3 2 1 5 5 C 1.46964 * 111.00041 * 66.04508 * 4 3 2 6 6 C 1.53044 * 109.36663 * 183.19239 * 5 4 3 7 7 H 1.08997 * 109.50684 * 61.57124 * 6 5 4 8 8 C 1.50699 * 109.48975 * 181.63212 * 6 5 4 9 9 H 1.08003 * 119.99761 * 119.89229 * 8 6 5 10 10 C 1.37872 * 119.99945 * 299.89059 * 8 6 5 11 11 N 1.31517 * 120.00000 * 359.97438 * 10 8 6 12 12 Si 1.86796 * 119.99952 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47456 * 89.99782 * 12 10 8 14 14 H 1.48507 * 109.47213 * 209.99758 * 12 10 8 15 15 H 1.48500 * 109.47353 * 329.99603 * 12 10 8 16 16 N 1.46965 * 109.36190 * 301.59939 * 6 5 4 17 17 C 1.46904 * 110.99867 * 183.19114 * 16 6 5 18 18 C 1.46954 * 110.88048 * 59.32041 * 16 6 5 19 19 H 1.09002 * 109.48875 * 60.64714 * 18 16 6 20 20 C 1.52998 * 109.48655 * 180.69228 * 18 16 6 21 21 C 1.46952 * 111.00198 * 189.84467 * 4 3 2 22 22 H 1.07996 * 120.00182 * 0.02562 * 1 2 3 23 23 H 1.08004 * 119.99701 * 179.97438 * 1 2 3 24 24 H 1.07998 * 119.99750 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47443 * 4.99421 * 3 2 1 26 26 H 1.09007 * 109.47199 * 244.99723 * 3 2 1 27 27 H 1.09002 * 109.48740 * 63.22286 * 5 4 3 28 28 H 1.09006 * 109.48425 * 303.15865 * 5 4 3 29 29 H 0.97001 * 119.99680 * 180.02562 * 11 10 8 30 30 H 1.09005 * 109.46410 * 292.24205 * 17 16 6 31 31 H 1.08995 * 109.47153 * 52.24021 * 17 16 6 32 32 H 1.09003 * 109.46930 * 172.24993 * 17 16 6 33 33 H 1.09001 * 109.47273 * 59.95515 * 20 18 16 34 34 H 1.09003 * 109.47301 * 179.97438 * 20 18 16 35 35 H 1.09003 * 109.47201 * 299.95037 * 20 18 16 36 36 H 1.08999 * 109.48996 * 56.84747 * 21 4 3 37 37 H 1.08996 * 109.48784 * 296.77741 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 4.0499 0.3200 0.9743 6 6 4.9518 0.3263 2.2106 7 1 4.3637 0.0693 3.0915 8 6 6.0569 -0.6826 2.0319 9 1 7.0882 -0.3619 2.0449 10 6 5.7515 -2.0149 1.8518 11 7 4.4958 -2.4055 1.8365 12 14 7.1214 -3.2655 1.6310 13 1 7.5278 -3.7941 2.9578 14 1 6.6392 -4.3828 0.7796 15 1 8.2862 -2.6141 0.9798 16 7 5.5332 1.6651 2.3828 17 6 6.4661 1.6919 3.5174 18 6 4.4797 2.6769 2.5431 19 1 3.8858 2.4467 3.4277 20 6 5.1185 4.0580 2.7024 21 6 3.5776 2.6706 1.3067 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9354 -0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3586 2.1316 0.0895 26 1 2.6213 1.4026 -0.9314 27 1 4.6437 0.5503 0.0897 28 1 3.5947 -0.6640 0.8611 29 1 4.2810 -3.3429 1.7102 30 1 5.9120 1.5572 4.4464 31 1 7.1938 0.8879 3.4084 32 1 6.9842 2.6507 3.5391 33 1 5.7122 4.2880 1.8177 34 1 4.3368 4.8085 2.8208 35 1 5.7615 4.0616 3.5826 36 1 2.7783 3.4003 1.4360 37 1 4.1661 2.9275 0.4259 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251680585.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:48 Heat of formation + Delta-G solvation = 35.536612 kcal Electronic energy + Delta-G solvation = -16384.706820 eV Core-core repulsion = 13969.708737 eV Total energy + Delta-G solvation = -2414.998083 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.69196 -35.61646 -33.34982 -32.55446 -30.91181 -27.87701 -26.33003 -25.24850 -24.36875 -21.43761 -21.05100 -18.97610 -18.64355 -16.38206 -15.32275 -15.02775 -14.76365 -14.45052 -14.07267 -13.52888 -13.05091 -13.00412 -12.66898 -12.23861 -11.70843 -11.57644 -11.42781 -11.25005 -11.00983 -10.92960 -10.65109 -10.48208 -10.40306 -10.06020 -9.97953 -9.43902 -9.06585 -8.83448 -8.47704 -7.48635 -7.11839 -6.04460 -4.09111 2.73705 3.28942 3.35835 3.39713 4.38034 4.79903 4.99290 5.25894 5.38429 5.50215 5.66962 5.76283 5.85524 5.92633 6.00575 6.02943 6.11519 6.20122 6.32239 6.33252 6.42888 6.45723 6.70878 6.79271 6.85147 6.97614 7.11189 7.21975 7.41377 7.58182 7.76444 7.92215 7.99057 8.16693 8.33059 8.63009 8.98896 9.55959 11.02160 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.018875 B = 0.012204 C = 0.007762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.109960 B = 2293.771284 C = 3606.607211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.122 4.122 3 C 0.082 3.918 4 N -0.542 5.542 5 C 0.065 3.935 6 C 0.222 3.778 7 H 0.007 0.993 8 C -0.507 4.507 9 H 0.065 0.935 10 C 0.061 3.939 11 N -0.890 5.890 12 Si 0.896 3.104 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 N -0.538 5.538 17 C 0.036 3.964 18 C 0.081 3.919 19 H 0.036 0.964 20 C -0.141 4.141 21 C 0.068 3.932 22 H 0.088 0.912 23 H 0.093 0.907 24 H 0.116 0.884 25 H 0.065 0.935 26 H 0.034 0.966 27 H 0.015 0.985 28 H 0.112 0.888 29 H 0.261 0.739 30 H 0.009 0.991 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.091 7.682 -1.407 8.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.141 4.141 3 C -0.045 4.045 4 N -0.266 5.266 5 C -0.062 4.062 6 C 0.116 3.884 7 H 0.025 0.975 8 C -0.546 4.546 9 H 0.083 0.917 10 C -0.141 4.141 11 N -0.528 5.528 12 Si 0.724 3.276 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.199 1.199 16 N -0.264 5.264 17 C -0.113 4.113 18 C -0.028 4.028 19 H 0.054 0.946 20 C -0.200 4.200 21 C -0.061 4.061 22 H 0.107 0.893 23 H 0.111 0.889 24 H 0.134 0.866 25 H 0.083 0.917 26 H 0.052 0.948 27 H 0.033 0.967 28 H 0.130 0.870 29 H 0.071 0.929 30 H 0.027 0.973 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.198 7.511 -1.436 8.289 hybrid contribution 0.623 -0.781 -0.107 1.004 sum -2.575 6.731 -1.543 7.370 Atomic orbital electron populations 1.23619 0.95767 1.00978 1.04303 1.23024 0.95741 0.98954 0.96341 1.21144 0.95231 0.95426 0.92722 1.62391 1.19200 1.05117 1.39924 1.22554 0.90324 0.95403 0.97888 1.19242 0.92533 0.83299 0.93351 0.97491 1.21149 0.92920 0.91075 1.49440 0.91670 1.24953 0.95601 0.98381 0.95153 1.69884 1.16632 1.16293 1.50035 0.86520 0.82141 0.80864 0.78044 1.20727 1.21230 1.19861 1.62258 1.16585 1.07202 1.40350 1.22242 0.96991 1.00869 0.91173 1.21558 0.92343 0.92519 0.96421 0.94585 1.21838 1.00308 0.95924 1.01881 1.22067 0.95861 0.91006 0.97142 0.89317 0.88892 0.86571 0.91685 0.94794 0.96692 0.87024 0.92870 0.97261 0.90425 0.93549 0.92323 0.93156 0.92656 0.92091 0.95034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.16 14.32 29.01 0.42 -2.75 16 2 C -0.12 -2.18 9.19 -36.03 -0.33 -2.51 16 3 C 0.08 1.48 5.40 -4.98 -0.03 1.45 16 4 N -0.54 -11.37 4.70 -235.91 -1.11 -12.48 16 5 C 0.07 1.59 4.47 -3.77 -0.02 1.58 16 6 C 0.22 5.72 1.95 -68.81 -0.13 5.58 16 7 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 8 C -0.51 -13.81 7.83 -34.44 -0.27 -14.08 16 9 H 0.07 1.77 6.49 -52.48 -0.34 1.43 16 10 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 11 N -0.89 -24.90 11.35 55.43 0.63 -24.27 16 12 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 14 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 16 N -0.54 -11.99 4.59 -228.14 -1.05 -13.04 16 17 C 0.04 0.72 8.80 60.07 0.53 1.25 16 18 C 0.08 1.56 2.56 -67.66 -0.17 1.38 16 19 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 20 C -0.14 -2.16 8.86 37.16 0.33 -1.83 16 21 C 0.07 1.27 4.89 -3.77 -0.02 1.25 16 22 H 0.09 1.20 7.84 -52.49 -0.41 0.78 16 23 H 0.09 1.29 8.06 -52.48 -0.42 0.87 16 24 H 0.12 2.31 6.89 -52.49 -0.36 1.95 16 25 H 0.06 1.02 7.68 -51.93 -0.40 0.62 16 26 H 0.03 0.60 8.12 -51.92 -0.42 0.18 16 27 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.11 2.95 4.51 -51.93 -0.23 2.72 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.08 1.66 6.04 -51.93 -0.31 1.35 16 32 H 0.05 0.80 6.48 -51.93 -0.34 0.46 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.81 6.45 -51.93 -0.33 0.47 16 36 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 287.01 15.07 4.33 4.33 Total: -1.00 -28.10 287.01 -8.10 -36.21 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -6.09 Total: 0.30 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 0.21 Total: -7.11 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: -1.53 Total: -49.79 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.10 -8.10 -36.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251680585.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.746 kcal (2) G-P(sol) polarization free energy of solvation -28.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds