Wall clock time and date at job start Mon Mar 30 2020 03:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50694 * 119.99888 * 2 1 4 4 N 1.46899 * 109.47319 * 124.99840 * 3 2 1 5 5 C 1.46964 * 111.00041 * 66.04508 * 4 3 2 6 6 C 1.53044 * 109.36663 * 183.19239 * 5 4 3 7 7 H 1.08997 * 109.50684 * 61.57124 * 6 5 4 8 8 C 1.50699 * 109.48975 * 181.63212 * 6 5 4 9 9 H 1.08003 * 119.99761 * 119.89229 * 8 6 5 10 10 C 1.37872 * 119.99945 * 299.89059 * 8 6 5 11 11 N 1.31517 * 120.00000 * 359.97438 * 10 8 6 12 12 Si 1.86796 * 119.99952 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47456 * 89.99782 * 12 10 8 14 14 H 1.48507 * 109.47213 * 209.99758 * 12 10 8 15 15 H 1.48500 * 109.47353 * 329.99603 * 12 10 8 16 16 N 1.46965 * 109.36190 * 301.59939 * 6 5 4 17 17 C 1.46904 * 110.99867 * 183.19114 * 16 6 5 18 18 C 1.46954 * 110.88048 * 59.32041 * 16 6 5 19 19 H 1.09002 * 109.48875 * 60.64714 * 18 16 6 20 20 C 1.52998 * 109.48655 * 180.69228 * 18 16 6 21 21 C 1.46952 * 111.00198 * 189.84467 * 4 3 2 22 22 H 1.07996 * 120.00182 * 0.02562 * 1 2 3 23 23 H 1.08004 * 119.99701 * 179.97438 * 1 2 3 24 24 H 1.07998 * 119.99750 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47443 * 4.99421 * 3 2 1 26 26 H 1.09007 * 109.47199 * 244.99723 * 3 2 1 27 27 H 1.09002 * 109.48740 * 63.22286 * 5 4 3 28 28 H 1.09006 * 109.48425 * 303.15865 * 5 4 3 29 29 H 0.97001 * 119.99680 * 180.02562 * 11 10 8 30 30 H 1.09005 * 109.46410 * 292.24205 * 17 16 6 31 31 H 1.08995 * 109.47153 * 52.24021 * 17 16 6 32 32 H 1.09003 * 109.46930 * 172.24993 * 17 16 6 33 33 H 1.09001 * 109.47273 * 59.95515 * 20 18 16 34 34 H 1.09003 * 109.47301 * 179.97438 * 20 18 16 35 35 H 1.09003 * 109.47201 * 299.95037 * 20 18 16 36 36 H 1.08999 * 109.48996 * 56.84747 * 21 4 3 37 37 H 1.08996 * 109.48784 * 296.77741 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 4.0499 0.3200 0.9743 6 6 4.9518 0.3263 2.2106 7 1 4.3637 0.0693 3.0915 8 6 6.0569 -0.6826 2.0319 9 1 7.0882 -0.3619 2.0449 10 6 5.7515 -2.0149 1.8518 11 7 4.4958 -2.4055 1.8365 12 14 7.1214 -3.2655 1.6310 13 1 7.5278 -3.7941 2.9578 14 1 6.6392 -4.3828 0.7796 15 1 8.2862 -2.6141 0.9798 16 7 5.5332 1.6651 2.3828 17 6 6.4661 1.6919 3.5174 18 6 4.4797 2.6769 2.5431 19 1 3.8858 2.4467 3.4277 20 6 5.1185 4.0580 2.7024 21 6 3.5776 2.6706 1.3067 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9354 -0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3586 2.1316 0.0895 26 1 2.6213 1.4026 -0.9314 27 1 4.6437 0.5503 0.0897 28 1 3.5947 -0.6640 0.8611 29 1 4.2810 -3.3429 1.7102 30 1 5.9120 1.5572 4.4464 31 1 7.1938 0.8879 3.4084 32 1 6.9842 2.6507 3.5391 33 1 5.7122 4.2880 1.8177 34 1 4.3368 4.8085 2.8208 35 1 5.7615 4.0616 3.5826 36 1 2.7783 3.4003 1.4360 37 1 4.1661 2.9275 0.4259 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251680585.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:47 Heat of formation + Delta-G solvation = 16.044092 kcal Electronic energy + Delta-G solvation = -16385.552079 eV Core-core repulsion = 13969.708737 eV Total energy + Delta-G solvation = -2415.843342 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.36776 -37.16534 -35.29239 -34.01061 -32.67353 -29.58680 -27.77817 -27.21204 -25.92475 -23.17310 -22.70032 -20.39053 -20.34270 -18.42409 -17.12647 -16.66625 -16.21454 -16.03988 -15.86498 -15.25204 -14.75232 -14.61827 -14.06409 -13.90817 -13.29770 -13.07494 -12.93017 -12.84225 -12.80699 -12.50300 -12.44906 -12.01202 -11.96594 -11.88145 -11.84061 -11.11411 -10.89481 -10.54812 -10.29649 -9.14269 -8.93139 -8.13152 -6.25997 1.40347 1.41713 1.42785 1.52538 2.40308 3.09448 3.30297 3.38593 3.97523 4.06379 4.30325 4.34368 4.36551 4.54280 4.55443 4.64584 4.69611 4.73921 4.80631 4.83812 5.00754 5.04754 5.08634 5.11394 5.19972 5.34604 5.48537 5.63203 5.69332 5.79442 5.90564 6.10863 6.25176 6.31126 6.50795 6.76376 6.89468 7.43198 8.92447 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.018875 B = 0.012204 C = 0.007762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.109960 B = 2293.771284 C = 3606.607211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.161 4.161 3 C 0.086 3.914 4 N -0.556 5.556 5 C 0.084 3.916 6 C 0.229 3.771 7 H -0.041 1.041 8 C -0.526 4.526 9 H 0.061 0.939 10 C 0.015 3.985 11 N -0.915 5.915 12 Si 0.961 3.039 13 H -0.275 1.275 14 H -0.282 1.282 15 H -0.269 1.269 16 N -0.547 5.547 17 C 0.039 3.961 18 C 0.075 3.925 19 H 0.018 0.982 20 C -0.130 4.130 21 C 0.067 3.933 22 H 0.116 0.884 23 H 0.105 0.895 24 H 0.081 0.919 25 H 0.097 0.903 26 H 0.031 0.969 27 H -0.006 1.006 28 H 0.086 0.914 29 H 0.262 0.738 30 H 0.004 0.996 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.513 9.359 -1.654 10.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.179 4.179 3 C -0.041 4.041 4 N -0.280 5.280 5 C -0.044 4.044 6 C 0.122 3.878 7 H -0.023 1.023 8 C -0.565 4.565 9 H 0.079 0.921 10 C -0.185 4.185 11 N -0.554 5.554 12 Si 0.786 3.214 13 H -0.201 1.201 14 H -0.208 1.208 15 H -0.193 1.193 16 N -0.273 5.273 17 C -0.109 4.109 18 C -0.034 4.034 19 H 0.036 0.964 20 C -0.188 4.188 21 C -0.061 4.061 22 H 0.134 0.866 23 H 0.123 0.877 24 H 0.099 0.901 25 H 0.115 0.885 26 H 0.049 0.951 27 H 0.012 0.988 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.022 0.978 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.114 0.886 37 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.621 9.214 -1.679 10.041 hybrid contribution 0.652 -1.271 -0.007 1.429 sum -2.968 7.943 -1.686 8.645 Atomic orbital electron populations 1.23893 0.94629 1.02840 0.99847 1.22855 0.96801 0.97759 1.00533 1.21205 0.94963 0.96489 0.91399 1.62333 1.18437 1.05589 1.41663 1.22094 0.90607 0.95530 0.96168 1.18987 0.91891 0.85144 0.91802 1.02328 1.21413 0.93177 0.92099 1.49795 0.92064 1.25737 0.97811 1.00178 0.94740 1.70029 1.18364 1.16595 1.50377 0.85513 0.79368 0.78385 0.78112 1.20119 1.20769 1.19318 1.62264 1.17611 1.06042 1.41373 1.22244 0.96314 1.02076 0.90290 1.21769 0.91852 0.93782 0.96018 0.96350 1.21763 1.01137 0.93631 1.02285 1.22199 0.96853 0.90339 0.96708 0.86562 0.87717 0.90060 0.88527 0.95128 0.98818 0.89632 0.92854 0.97757 0.92284 0.90015 0.92046 0.90175 0.91977 0.88608 0.95189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.91 14.32 67.78 0.97 -3.94 16 2 C -0.16 -5.74 9.19 25.64 0.24 -5.50 16 3 C 0.09 3.02 5.40 85.56 0.46 3.48 16 4 N -0.56 -23.40 4.70 -900.28 -4.23 -27.63 16 5 C 0.08 4.29 4.47 86.31 0.39 4.67 16 6 C 0.23 12.28 1.95 44.17 0.09 12.37 16 7 H -0.04 -2.52 8.14 -2.39 -0.02 -2.54 16 8 C -0.53 -29.69 7.83 25.60 0.20 -29.49 16 9 H 0.06 3.42 6.49 -2.91 -0.02 3.40 16 10 C 0.01 0.83 5.30 84.65 0.45 1.27 16 11 N -0.91 -53.23 11.35 21.45 0.24 -52.99 16 12 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 13 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 14 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 16 N -0.55 -24.60 4.59 -875.69 -4.02 -28.62 16 17 C 0.04 1.57 8.80 127.69 1.12 2.69 16 18 C 0.07 2.79 2.56 44.92 0.11 2.91 16 19 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 20 C -0.13 -3.56 8.86 71.98 0.64 -2.92 16 21 C 0.07 2.40 4.89 86.31 0.42 2.82 16 22 H 0.12 2.66 7.84 -2.91 -0.02 2.64 16 23 H 0.10 2.68 8.06 -2.91 -0.02 2.66 16 24 H 0.08 3.45 6.89 -2.91 -0.02 3.43 16 25 H 0.10 2.74 7.68 -2.39 -0.02 2.72 16 26 H 0.03 1.08 8.12 -2.38 -0.02 1.06 16 27 H -0.01 -0.35 8.14 -2.39 -0.02 -0.36 16 28 H 0.09 4.81 4.51 -2.38 -0.01 4.80 16 29 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 31 H 0.06 2.57 6.04 -2.39 -0.01 2.55 16 32 H 0.08 2.68 6.48 -2.39 -0.02 2.66 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 34 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.06 1.61 6.45 -2.39 -0.02 1.59 16 36 H 0.10 2.77 8.07 -2.39 -0.02 2.75 16 37 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -63.40 287.01 0.12 -63.28 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 1.02 Total: 11.50 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: 5.09 Total: -11.65 kcal Atomic # 7 Polarization: -101.22 SS G_CDS: -8.01 Total: -109.23 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -63.40 0.12 -63.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251680585.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.322 kcal (2) G-P(sol) polarization free energy of solvation -63.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds