Wall clock time and date at job start Mon Mar 30 2020 03:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.38060 * 2 1 4 4 C 1.52932 * 109.42524 * 240.13319 * 2 1 3 5 5 H 1.08999 * 109.53964 * 58.70347 * 4 2 1 6 6 C 1.50697 * 109.53963 * 178.88069 * 4 2 1 7 7 H 1.08000 * 120.00537 * 5.37052 * 6 4 2 8 8 C 1.37881 * 119.99916 * 185.37767 * 6 4 2 9 9 N 1.31519 * 119.99927 * 9.33373 * 8 6 4 10 10 Si 1.86796 * 120.00165 * 189.33768 * 8 6 4 11 11 H 1.48497 * 109.47167 * 94.98331 * 10 8 6 12 12 H 1.48496 * 109.47189 * 214.98632 * 10 8 6 13 13 H 1.48498 * 109.46994 * 334.98392 * 10 8 6 14 14 N 1.47028 * 109.03892 * 298.74896 * 4 2 1 15 15 C 1.46838 * 110.54210 * 299.87226 * 14 4 2 16 16 C 1.53151 * 109.76422 * 59.60676 * 15 14 4 17 17 H 1.09003 * 109.52639 * 62.81728 * 16 15 14 18 18 C 1.53178 * 108.57422 * 182.54940 * 16 15 14 19 19 C 1.53006 * 109.63696 * 178.50985 * 18 16 15 20 20 C 1.53175 * 108.81810 * 302.03571 * 19 18 16 21 21 C 1.52918 * 108.99924 * 58.40085 * 20 19 18 22 22 N 1.46826 * 109.75461 * 302.54763 * 16 15 14 23 23 H 1.09000 * 109.47341 * 300.14060 * 1 2 3 24 24 H 1.09001 * 109.47007 * 60.14332 * 1 2 3 25 25 H 1.09004 * 109.47334 * 180.13950 * 1 2 3 26 26 H 0.96998 * 119.99815 * 179.97438 * 9 8 6 27 27 H 1.00905 * 110.99850 * 176.25131 * 14 4 2 28 28 H 1.08999 * 109.41910 * 179.69837 * 15 14 4 29 29 H 1.08998 * 109.42216 * 299.51967 * 15 14 4 30 30 H 1.08995 * 109.44392 * 298.56115 * 18 16 15 31 31 H 1.08999 * 109.43919 * 58.49619 * 18 16 15 32 32 H 1.09000 * 109.56566 * 61.89509 * 19 18 16 33 33 H 1.08990 * 109.56870 * 182.25195 * 19 18 16 34 34 H 1.08996 * 109.61592 * 298.50519 * 20 19 18 35 35 H 1.09001 * 109.48535 * 178.21531 * 20 19 18 36 36 H 1.08997 * 109.40632 * 180.19384 * 21 20 19 37 37 H 1.09006 * 109.40260 * 60.35614 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8917 1.0282 0.0000 4 6 2.0387 -0.7182 -1.2507 5 1 1.6567 -0.2166 -2.1398 6 6 3.5454 -0.6957 -1.2672 7 1 4.0888 -0.2943 -0.4246 8 6 4.2303 -1.1875 -2.3582 9 7 3.5783 -1.5053 -3.4553 10 14 6.0841 -1.4025 -2.2779 11 1 6.4040 -2.8005 -1.8928 12 1 6.6746 -1.1080 -3.6082 13 1 6.6473 -0.4699 -1.2689 14 7 1.5677 -2.1109 -1.2289 15 6 2.0719 -2.8067 -0.0382 16 6 1.5826 -2.0925 1.2250 17 1 0.4942 -2.1342 1.2687 18 6 2.1752 -2.8012 2.4468 19 6 1.7311 -2.0836 3.7231 20 6 2.1838 -0.6221 3.6513 21 6 1.5755 0.0270 2.4076 22 7 2.0193 -0.6908 1.2034 23 1 -0.3634 0.5160 0.8887 24 1 -0.3633 0.5116 -0.8913 25 1 -0.3634 -1.0277 0.0025 26 1 4.0602 -1.8509 -4.2229 27 1 1.8356 -2.5964 -2.0720 28 1 1.7081 -3.8342 -0.0377 29 1 3.1618 -2.8090 -0.0541 30 1 1.8274 -3.8338 2.4714 31 1 3.2632 -2.7861 2.3826 32 1 0.6452 -2.1270 3.8072 33 1 2.1855 -2.5645 4.5893 34 1 3.2712 -0.5784 3.5907 35 1 1.8452 -0.0924 4.5418 36 1 1.8964 1.0670 2.3481 37 1 0.4882 -0.0133 2.4731 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259622599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:32 Heat of formation + Delta-G solvation = -3.972298 kcal Electronic energy + Delta-G solvation = -16963.960640 eV Core-core repulsion = 14547.249322 eV Total energy + Delta-G solvation = -2416.711318 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.40777 -35.60322 -33.13551 -32.19043 -30.14943 -29.12550 -26.75955 -24.49608 -23.14788 -22.30426 -21.51680 -19.32910 -17.80418 -16.05929 -15.63553 -14.96961 -14.44911 -14.15350 -13.83020 -13.62360 -13.12431 -12.90503 -12.59228 -12.36254 -11.76857 -11.60137 -11.31079 -11.23732 -10.91374 -10.76546 -10.59186 -10.52475 -10.29282 -10.18024 -9.95107 -9.63495 -9.33109 -8.95639 -8.38257 -7.43056 -6.93017 -5.95682 -4.01648 3.31419 3.39308 3.44367 4.46658 4.62351 5.16977 5.22640 5.24387 5.31699 5.58181 5.81267 5.89388 5.95578 5.97146 6.03172 6.04609 6.14957 6.22841 6.23744 6.32205 6.36423 6.47408 6.49489 6.62007 6.69708 6.74622 6.95669 7.08539 7.22081 7.62974 7.94589 7.95502 8.06714 8.34099 8.66641 8.96329 9.09540 9.63777 11.06478 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.030514 B = 0.010614 C = 0.009609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.383382 B = 2637.296234 C = 2913.328021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.094 3.906 3 H 0.067 0.933 4 C 0.211 3.789 5 H 0.049 0.951 6 C -0.517 4.517 7 H 0.063 0.937 8 C 0.061 3.939 9 N -0.898 5.898 10 Si 0.887 3.113 11 H -0.284 1.284 12 H -0.290 1.290 13 H -0.274 1.274 14 N -0.689 5.689 15 C 0.072 3.928 16 C 0.096 3.904 17 H 0.035 0.965 18 C -0.113 4.113 19 C -0.117 4.117 20 C -0.115 4.115 21 C 0.050 3.950 22 N -0.506 5.506 23 H 0.033 0.967 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.260 0.740 27 H 0.347 0.653 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.187 -0.564 10.398 11.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.014 4.014 3 H 0.086 0.914 4 C 0.103 3.897 5 H 0.067 0.933 6 C -0.557 4.557 7 H 0.081 0.919 8 C -0.140 4.140 9 N -0.538 5.538 10 Si 0.715 3.285 11 H -0.210 1.210 12 H -0.216 1.216 13 H -0.199 1.199 14 N -0.320 5.320 15 C -0.059 4.059 16 C -0.012 4.012 17 H 0.053 0.947 18 C -0.152 4.152 19 C -0.155 4.155 20 C -0.153 4.153 21 C -0.079 4.079 22 N -0.230 5.230 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.165 0.835 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -4.256 -0.470 10.483 11.324 hybrid contribution 1.159 -0.277 -0.277 1.223 sum -3.098 -0.747 10.206 10.692 Atomic orbital electron populations 1.22379 0.99147 1.02069 0.99768 1.21838 0.90883 0.97496 0.91208 0.91436 1.19158 0.93135 0.86161 0.91279 0.93336 1.21751 0.92356 1.39584 1.02049 0.91898 1.25022 0.98033 0.95893 0.95067 1.69916 1.35718 1.45226 1.02914 0.86660 0.86368 0.78342 0.77117 1.20990 1.21570 1.19907 1.61221 1.61105 1.05250 1.04433 1.21671 0.98970 0.94631 0.90649 1.21535 0.96251 0.88778 0.94686 0.94746 1.21633 1.01676 0.98025 0.93838 1.21541 1.00165 0.96078 0.97719 1.21565 1.01493 0.95501 0.96754 1.22106 0.96798 0.97886 0.91077 1.62416 1.58546 1.01120 1.00938 0.94804 0.93036 0.91685 0.93023 0.83461 0.93775 0.93738 0.92345 0.91281 0.92775 0.92537 0.91290 0.92542 0.91619 0.95611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 8.33 37.16 0.31 -2.95 16 2 C 0.09 1.99 2.31 -67.62 -0.16 1.83 16 3 H 0.07 1.45 8.09 -51.93 -0.42 1.03 16 4 C 0.21 5.18 2.37 -68.83 -0.16 5.02 16 5 H 0.05 1.33 8.09 -51.93 -0.42 0.91 16 6 C -0.52 -13.93 6.83 -34.44 -0.24 -14.17 16 7 H 0.06 1.76 7.65 -52.49 -0.40 1.36 16 8 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 9 N -0.90 -25.25 12.33 55.43 0.68 -24.57 16 10 Si 0.89 21.56 29.55 -169.99 -5.02 16.54 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 14 N -0.69 -16.06 5.99 -107.86 -0.65 -16.71 16 15 C 0.07 1.52 5.62 -3.78 -0.02 1.50 16 16 C 0.10 1.81 1.93 -67.58 -0.13 1.68 16 17 H 0.03 0.66 6.51 -51.93 -0.34 0.32 16 18 C -0.11 -1.80 5.29 -26.64 -0.14 -1.94 16 19 C -0.12 -1.60 6.02 -26.64 -0.16 -1.76 16 20 C -0.12 -1.63 6.10 -26.68 -0.16 -1.79 16 21 C 0.05 0.81 4.91 -3.79 -0.02 0.79 16 22 N -0.51 -9.92 4.20 -218.36 -0.92 -10.84 16 23 H 0.03 0.56 6.47 -51.93 -0.34 0.22 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.06 1.27 6.01 -51.93 -0.31 0.96 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.35 8.76 7.74 -39.29 -0.30 8.46 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.04 1.07 7.06 -51.93 -0.37 0.70 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 37 H 0.03 0.41 6.50 -51.93 -0.34 0.08 16 LS Contribution 274.03 15.07 4.13 4.13 Total: -1.00 -27.23 274.03 -8.92 -36.15 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.17 Total: 5.51 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -0.97 Total: -10.20 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.88 Total: -52.11 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.23 -8.92 -36.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259622599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.173 kcal (2) G-P(sol) polarization free energy of solvation -27.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds