Wall clock time and date at job start Mon Mar 30 2020 03:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.38060 * 2 1 4 4 C 1.52932 * 109.42524 * 240.13319 * 2 1 3 5 5 H 1.08999 * 109.53964 * 58.70347 * 4 2 1 6 6 C 1.50697 * 109.53963 * 178.88069 * 4 2 1 7 7 H 1.08000 * 120.00537 * 5.37052 * 6 4 2 8 8 C 1.37881 * 119.99916 * 185.37767 * 6 4 2 9 9 N 1.31519 * 119.99927 * 9.33373 * 8 6 4 10 10 Si 1.86796 * 120.00165 * 189.33768 * 8 6 4 11 11 H 1.48497 * 109.47167 * 94.98331 * 10 8 6 12 12 H 1.48496 * 109.47189 * 214.98632 * 10 8 6 13 13 H 1.48498 * 109.46994 * 334.98392 * 10 8 6 14 14 N 1.47028 * 109.03892 * 298.74896 * 4 2 1 15 15 C 1.46838 * 110.54210 * 299.87226 * 14 4 2 16 16 C 1.53151 * 109.76422 * 59.60676 * 15 14 4 17 17 H 1.09003 * 109.52639 * 62.81728 * 16 15 14 18 18 C 1.53178 * 108.57422 * 182.54940 * 16 15 14 19 19 C 1.53006 * 109.63696 * 178.50985 * 18 16 15 20 20 C 1.53175 * 108.81810 * 302.03571 * 19 18 16 21 21 C 1.52918 * 108.99924 * 58.40085 * 20 19 18 22 22 N 1.46826 * 109.75461 * 302.54763 * 16 15 14 23 23 H 1.09000 * 109.47341 * 300.14060 * 1 2 3 24 24 H 1.09001 * 109.47007 * 60.14332 * 1 2 3 25 25 H 1.09004 * 109.47334 * 180.13950 * 1 2 3 26 26 H 0.96998 * 119.99815 * 179.97438 * 9 8 6 27 27 H 1.00905 * 110.99850 * 176.25131 * 14 4 2 28 28 H 1.08999 * 109.41910 * 179.69837 * 15 14 4 29 29 H 1.08998 * 109.42216 * 299.51967 * 15 14 4 30 30 H 1.08995 * 109.44392 * 298.56115 * 18 16 15 31 31 H 1.08999 * 109.43919 * 58.49619 * 18 16 15 32 32 H 1.09000 * 109.56566 * 61.89509 * 19 18 16 33 33 H 1.08990 * 109.56870 * 182.25195 * 19 18 16 34 34 H 1.08996 * 109.61592 * 298.50519 * 20 19 18 35 35 H 1.09001 * 109.48535 * 178.21531 * 20 19 18 36 36 H 1.08997 * 109.40632 * 180.19384 * 21 20 19 37 37 H 1.09006 * 109.40260 * 60.35614 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8917 1.0282 0.0000 4 6 2.0387 -0.7182 -1.2507 5 1 1.6567 -0.2166 -2.1398 6 6 3.5454 -0.6957 -1.2672 7 1 4.0888 -0.2943 -0.4246 8 6 4.2303 -1.1875 -2.3582 9 7 3.5783 -1.5053 -3.4553 10 14 6.0841 -1.4025 -2.2779 11 1 6.4040 -2.8005 -1.8928 12 1 6.6746 -1.1080 -3.6082 13 1 6.6473 -0.4699 -1.2689 14 7 1.5677 -2.1109 -1.2289 15 6 2.0719 -2.8067 -0.0382 16 6 1.5826 -2.0925 1.2250 17 1 0.4942 -2.1342 1.2687 18 6 2.1752 -2.8012 2.4468 19 6 1.7311 -2.0836 3.7231 20 6 2.1838 -0.6221 3.6513 21 6 1.5755 0.0270 2.4076 22 7 2.0193 -0.6908 1.2034 23 1 -0.3634 0.5160 0.8887 24 1 -0.3633 0.5116 -0.8913 25 1 -0.3634 -1.0277 0.0025 26 1 4.0602 -1.8509 -4.2229 27 1 1.8356 -2.5964 -2.0720 28 1 1.7081 -3.8342 -0.0377 29 1 3.1618 -2.8090 -0.0541 30 1 1.8274 -3.8338 2.4714 31 1 3.2632 -2.7861 2.3826 32 1 0.6452 -2.1270 3.8072 33 1 2.1855 -2.5645 4.5893 34 1 3.2712 -0.5784 3.5907 35 1 1.8452 -0.0924 4.5418 36 1 1.8964 1.0670 2.3481 37 1 0.4882 -0.0133 2.4731 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259622599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:32 Heat of formation + Delta-G solvation = -22.397020 kcal Electronic energy + Delta-G solvation = -16964.759596 eV Core-core repulsion = 14547.249322 eV Total energy + Delta-G solvation = -2417.510274 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.93884 -37.17690 -34.74167 -34.08934 -31.72381 -30.56853 -28.59365 -26.24982 -24.59446 -23.94116 -23.06378 -20.63355 -19.52839 -18.08700 -17.29240 -16.70493 -16.05511 -15.75592 -15.20367 -14.94112 -14.79993 -14.67738 -14.08275 -13.85164 -13.54068 -13.22867 -12.90141 -12.67992 -12.65802 -12.49255 -12.40697 -11.92947 -11.77092 -11.76580 -11.49824 -11.19590 -11.00233 -10.71914 -10.44009 -9.04299 -8.77886 -8.04771 -6.18719 1.35423 1.38542 1.48251 2.42324 3.11881 3.20244 3.87581 3.99206 4.06609 4.14550 4.31758 4.49782 4.51733 4.56589 4.58481 4.63004 4.70671 4.81460 4.94598 5.00144 5.03503 5.15579 5.15881 5.22273 5.27516 5.31673 5.39081 5.45076 5.61998 5.72570 5.78422 6.23678 6.47586 6.53586 6.74209 6.91253 7.00546 7.49318 8.93773 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.030514 B = 0.010614 C = 0.009609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.383382 B = 2637.296234 C = 2913.328021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.097 3.903 3 H 0.057 0.943 4 C 0.212 3.788 5 H 0.012 0.988 6 C -0.522 4.522 7 H 0.048 0.952 8 C 0.018 3.982 9 N -0.921 5.921 10 Si 0.943 3.057 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 N -0.683 5.683 15 C 0.072 3.928 16 C 0.100 3.900 17 H 0.037 0.963 18 C -0.110 4.110 19 C -0.111 4.111 20 C -0.112 4.112 21 C 0.048 3.952 22 N -0.525 5.525 23 H 0.058 0.942 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.261 0.739 27 H 0.331 0.669 28 H 0.062 0.938 29 H 0.012 0.988 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.565 -0.862 12.639 13.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.012 4.012 3 H 0.075 0.925 4 C 0.103 3.897 5 H 0.030 0.970 6 C -0.562 4.562 7 H 0.066 0.934 8 C -0.180 4.180 9 N -0.562 5.562 10 Si 0.770 3.230 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 N -0.312 5.312 15 C -0.059 4.059 16 C -0.008 4.008 17 H 0.055 0.945 18 C -0.149 4.149 19 C -0.149 4.149 20 C -0.149 4.149 21 C -0.080 4.080 22 N -0.250 5.250 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.148 0.852 28 H 0.081 0.919 29 H 0.031 0.969 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.638 -0.762 12.747 13.587 hybrid contribution 1.272 -0.176 -0.986 1.619 sum -3.367 -0.937 11.761 12.269 Atomic orbital electron populations 1.22217 0.97075 1.01830 1.00871 1.21616 0.92469 0.96459 0.90650 0.92458 1.19022 0.91925 0.86972 0.91788 0.97042 1.21872 0.93697 1.39237 1.01378 0.93382 1.25633 1.01646 0.95878 0.94877 1.70012 1.36981 1.45911 1.03307 0.85776 0.82070 0.78151 0.76998 1.20678 1.21203 1.19919 1.61230 1.60710 1.04672 1.04588 1.21776 0.97023 0.95985 0.91107 1.21522 0.96354 0.88414 0.94539 0.94499 1.21618 1.00489 0.99047 0.93698 1.21527 1.00987 0.95360 0.97026 1.21567 1.00603 0.96178 0.96593 1.22206 0.97512 0.97775 0.90462 1.62356 1.59379 1.01737 1.01507 0.92287 0.93306 0.92477 0.93029 0.85226 0.91929 0.96920 0.90577 0.92918 0.91638 0.90199 0.92560 0.89603 0.91651 0.94633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.83 8.33 71.98 0.60 -5.23 16 2 C 0.10 4.10 2.31 44.85 0.10 4.20 16 3 H 0.06 2.50 8.09 -2.39 -0.02 2.48 16 4 C 0.21 10.69 2.37 44.12 0.10 10.79 16 5 H 0.01 0.66 8.09 -2.39 -0.02 0.64 16 6 C -0.52 -28.80 6.83 25.60 0.17 -28.63 16 7 H 0.05 2.75 7.65 -2.91 -0.02 2.73 16 8 C 0.02 1.03 5.30 84.65 0.45 1.48 16 9 N -0.92 -53.00 12.33 21.45 0.26 -52.73 16 10 Si 0.94 44.88 29.55 68.60 2.03 46.91 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 13 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 14 N -0.68 -32.42 5.99 -495.17 -2.97 -35.39 16 15 C 0.07 3.03 5.62 86.37 0.49 3.52 16 16 C 0.10 3.62 1.93 45.04 0.09 3.71 16 17 H 0.04 1.33 6.51 -2.39 -0.02 1.32 16 18 C -0.11 -3.22 5.29 30.66 0.16 -3.06 16 19 C -0.11 -2.59 6.02 30.65 0.18 -2.41 16 20 C -0.11 -2.77 6.10 30.63 0.19 -2.59 16 21 C 0.05 1.45 4.91 86.25 0.42 1.88 16 22 N -0.53 -20.08 4.20 -844.76 -3.55 -23.63 16 23 H 0.06 1.82 6.47 -2.39 -0.02 1.81 16 24 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.06 2.15 6.01 -2.38 -0.01 2.14 16 26 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 27 H 0.33 17.24 7.74 -89.69 -0.69 16.54 16 28 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.01 0.61 7.06 -2.39 -0.02 0.59 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.93 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 37 H 0.04 1.01 6.50 -2.38 -0.02 1.00 16 Total: -1.00 -59.04 274.03 -0.92 -59.96 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.34 Total: 21.21 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 2.96 Total: -16.33 kcal Atomic # 7 Polarization: -105.50 SS G_CDS: -6.25 Total: -111.75 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -59.04 -0.92 -59.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259622599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.564 kcal (2) G-P(sol) polarization free energy of solvation -59.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds