Wall clock time and date at job start Mon Mar 30 2020 03:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.60569 * 2 1 4 4 N 1.47022 * 109.49104 * 239.75700 * 2 1 3 5 5 C 1.46845 * 110.48015 * 179.97438 * 4 2 1 6 6 C 1.53152 * 109.75393 * 59.64222 * 5 4 2 7 7 H 1.09003 * 109.51376 * 62.77556 * 6 5 4 8 8 C 1.53164 * 108.72295 * 182.40078 * 6 5 4 9 9 C 1.53005 * 109.62909 * 178.64104 * 8 6 5 10 10 C 1.53182 * 108.87409 * 302.06562 * 9 8 6 11 11 C 1.52581 * 109.03737 * 58.20560 * 10 9 8 12 12 N 1.46831 * 109.76351 * 302.51722 * 6 5 4 13 13 C 1.47125 * 111.16825 * 57.50537 * 12 6 5 14 14 H 1.08997 * 109.42718 * 61.61001 * 13 12 6 15 15 C 1.50702 * 109.42149 * 181.49730 * 13 12 6 16 16 H 1.07996 * 120.00334 * 65.77743 * 15 13 12 17 17 C 1.37882 * 119.99972 * 245.77383 * 15 13 12 18 18 N 1.31519 * 119.99455 * 10.89425 * 17 15 13 19 19 Si 1.86797 * 119.99983 * 190.89687 * 17 15 13 20 20 H 1.48504 * 109.46893 * 179.97438 * 19 17 15 21 21 H 1.48493 * 109.47008 * 299.99983 * 19 17 15 22 22 H 1.48504 * 109.47258 * 60.00016 * 19 17 15 23 23 H 1.09000 * 109.47299 * 305.71706 * 1 2 3 24 24 H 1.08996 * 109.47234 * 65.71881 * 1 2 3 25 25 H 1.09002 * 109.47027 * 185.71800 * 1 2 3 26 26 H 1.00901 * 111.05017 * 303.56179 * 4 2 1 27 27 H 1.09001 * 109.41734 * 299.56184 * 5 4 2 28 28 H 1.08991 * 109.38016 * 179.70449 * 5 4 2 29 29 H 1.09004 * 109.44696 * 298.69638 * 8 6 5 30 30 H 1.09004 * 109.44112 * 58.59238 * 8 6 5 31 31 H 1.09003 * 109.56781 * 61.88593 * 9 8 6 32 32 H 1.09000 * 109.56684 * 182.12585 * 9 8 6 33 33 H 1.08990 * 109.54841 * 178.14002 * 10 9 8 34 34 H 1.08998 * 109.54946 * 298.43189 * 10 9 8 35 35 H 1.09000 * 109.44661 * 180.26137 * 11 10 9 36 36 H 1.09004 * 109.18166 * 60.62693 * 11 10 9 37 37 H 0.96997 * 120.00559 * 5.67617 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 7 2.0205 -0.6981 -1.1973 5 6 3.4888 -0.7103 -1.2195 6 6 4.0194 -1.4221 0.0284 7 1 3.6913 -2.4615 0.0219 8 6 5.5500 -1.3685 0.0114 9 6 6.1019 -2.0451 1.2679 10 6 5.5322 -1.3387 2.5020 11 6 4.0086 -1.4064 2.4551 12 7 3.5118 -0.7550 1.2340 13 6 2.0409 -0.7255 1.2454 14 1 1.6579 -1.7460 1.2531 15 6 1.5638 -0.0018 2.4782 16 1 1.7682 1.0517 2.5990 17 6 0.8662 -0.6847 3.4519 18 7 0.8008 -1.9978 3.4152 19 14 0.0142 0.2550 4.8231 20 1 -0.6613 -0.7033 5.7345 21 1 1.0194 1.0388 5.5849 22 1 -0.9935 1.1767 4.2397 23 1 -0.3634 0.5999 0.8344 24 1 -0.3633 0.4226 -0.9367 25 1 -0.3633 -1.0226 0.1024 26 1 1.6507 -1.6355 -1.2473 27 1 3.8594 0.3146 -1.2375 28 1 3.8326 -1.2358 -2.1103 29 1 5.9215 -1.8867 -0.8727 30 1 5.8764 -0.3288 -0.0140 31 1 5.8053 -3.0939 1.2781 32 1 7.1895 -1.9732 1.2734 33 1 5.8925 -1.8330 3.4040 34 1 5.8495 -0.2959 2.5042 35 1 3.5959 -0.9013 3.3284 36 1 3.6962 -2.4507 2.4612 37 1 1.3099 -2.4904 2.7527 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259665944.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:13 Heat of formation + Delta-G solvation = -10.552674 kcal Electronic energy + Delta-G solvation = -16930.778187 eV Core-core repulsion = 14513.781523 eV Total energy + Delta-G solvation = -2416.996664 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.30387 -35.83051 -33.87552 -31.35570 -31.21802 -29.10123 -26.02108 -24.71797 -23.11877 -21.84892 -21.20829 -19.64342 -19.04538 -16.75528 -15.09707 -14.93982 -14.51638 -14.15114 -13.89746 -13.75586 -13.34500 -13.05277 -12.50551 -12.19975 -11.94681 -11.53367 -11.31451 -10.89598 -10.84482 -10.67257 -10.57052 -10.46592 -10.31631 -10.16461 -10.14196 -9.80437 -9.51436 -8.88545 -8.43715 -7.63341 -7.16815 -6.39721 -4.11728 3.40537 3.41599 3.60405 4.45222 4.73828 4.95786 5.24734 5.29424 5.35738 5.40461 5.66285 5.84243 5.87156 6.03780 6.05316 6.13428 6.14944 6.26701 6.32686 6.36359 6.38558 6.50887 6.54553 6.62523 6.74465 6.82369 6.92469 7.12031 7.15978 7.21181 7.58291 7.91571 8.02039 8.19428 8.41930 8.53203 8.81324 9.57164 10.92274 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.026040 B = 0.012326 C = 0.009080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.028910 B = 2271.040753 C = 3083.044945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.095 3.905 3 H 0.072 0.928 4 N -0.692 5.692 5 C 0.069 3.931 6 C 0.042 3.958 7 H 0.021 0.979 8 C -0.106 4.106 9 C -0.118 4.118 10 C -0.117 4.117 11 C 0.073 3.927 12 N -0.523 5.523 13 C 0.163 3.837 14 H 0.014 0.986 15 C -0.572 4.572 16 H 0.054 0.946 17 C 0.026 3.974 18 N -0.906 5.906 19 Si 1.062 2.938 20 H -0.284 1.284 21 H -0.287 1.287 22 H -0.286 1.286 23 H 0.070 0.930 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.327 0.673 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.012 0.988 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.015 0.657 -5.064 7.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.014 4.014 3 H 0.090 0.910 4 N -0.319 5.319 5 C -0.061 4.061 6 C -0.069 4.069 7 H 0.039 0.961 8 C -0.144 4.144 9 C -0.156 4.156 10 C -0.155 4.155 11 C -0.055 4.055 12 N -0.249 5.249 13 C 0.056 3.944 14 H 0.031 0.969 15 C -0.612 4.612 16 H 0.072 0.928 17 C -0.179 4.179 18 N -0.543 5.543 19 Si 0.890 3.110 20 H -0.209 1.209 21 H -0.214 1.214 22 H -0.212 1.212 23 H 0.089 0.911 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.143 0.857 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.030 0.970 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.120 1.521 -4.195 6.792 hybrid contribution 1.043 -1.460 -0.555 1.879 sum 6.164 0.061 -4.750 7.782 Atomic orbital electron populations 1.21549 0.94782 1.01267 1.00410 1.21683 0.94687 0.98056 0.86994 0.90967 1.61127 1.06993 1.21680 1.42111 1.22008 0.88458 1.00688 0.94964 1.22396 0.94785 0.95548 0.94154 0.96126 1.21536 0.95140 1.00876 0.96853 1.21551 0.99023 0.99157 0.95834 1.21571 0.96938 1.00466 0.96538 1.21713 0.92467 0.96019 0.95341 1.62801 1.11873 1.51030 0.99233 1.20258 0.83025 0.95587 0.95539 0.96871 1.21663 1.38026 0.97061 1.04403 0.92777 1.25834 0.96016 0.96346 0.99745 1.70850 1.40757 1.06684 1.35965 0.83653 0.76497 0.75076 0.75803 1.20947 1.21392 1.21226 0.91143 0.94057 0.94081 0.85680 0.90939 0.91888 0.92783 0.91578 0.92964 0.92758 0.92681 0.91750 0.89211 0.96997 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.51 9.12 37.16 0.34 -2.17 16 2 C 0.10 2.06 2.69 -67.69 -0.18 1.87 16 3 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 4 N -0.69 -13.11 6.58 -106.64 -0.70 -13.82 16 5 C 0.07 1.21 5.92 -3.78 -0.02 1.19 16 6 C 0.04 0.79 2.34 -67.59 -0.16 0.63 16 7 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 8 C -0.11 -1.67 5.30 -26.64 -0.14 -1.82 16 9 C -0.12 -1.84 6.01 -26.63 -0.16 -2.00 16 10 C -0.12 -2.08 6.09 -26.85 -0.16 -2.24 16 11 C 0.07 1.60 5.13 -3.96 -0.02 1.58 16 12 N -0.52 -11.52 4.51 -219.96 -0.99 -12.51 16 13 C 0.16 3.91 1.56 -68.78 -0.11 3.80 16 14 H 0.01 0.37 6.00 -51.93 -0.31 0.05 16 15 C -0.57 -15.05 5.79 -34.44 -0.20 -15.25 16 16 H 0.05 1.48 7.84 -52.49 -0.41 1.07 16 17 C 0.03 0.70 5.24 -17.82 -0.09 0.61 16 18 N -0.91 -25.98 13.56 55.43 0.75 -25.23 16 19 Si 1.06 24.28 29.92 -169.99 -5.09 19.19 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.28 7.11 56.52 0.40 -5.87 16 23 H 0.07 1.53 7.47 -51.93 -0.39 1.14 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.33 6.10 8.80 -39.29 -0.35 5.75 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.09 2.24 6.60 -51.93 -0.34 1.90 16 36 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.27 7.76 6.55 -40.82 -0.27 7.49 16 LS Contribution 280.20 15.07 4.22 4.22 Total: -1.00 -27.37 280.20 -9.07 -36.44 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -6.36 Total: 5.50 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -0.91 Total: -13.80 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -0.94 Total: -51.56 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -5.09 Total: 19.19 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.37 -9.07 -36.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259665944.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.888 kcal (2) G-P(sol) polarization free energy of solvation -27.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds