Wall clock time and date at job start Mon Mar 30 2020 03:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.60569 * 2 1 4 4 N 1.47022 * 109.49104 * 239.75700 * 2 1 3 5 5 C 1.46845 * 110.48015 * 179.97438 * 4 2 1 6 6 C 1.53152 * 109.75393 * 59.64222 * 5 4 2 7 7 H 1.09003 * 109.51376 * 62.77556 * 6 5 4 8 8 C 1.53164 * 108.72295 * 182.40078 * 6 5 4 9 9 C 1.53005 * 109.62909 * 178.64104 * 8 6 5 10 10 C 1.53182 * 108.87409 * 302.06562 * 9 8 6 11 11 C 1.52581 * 109.03737 * 58.20560 * 10 9 8 12 12 N 1.46831 * 109.76351 * 302.51722 * 6 5 4 13 13 C 1.47125 * 111.16825 * 57.50537 * 12 6 5 14 14 H 1.08997 * 109.42718 * 61.61001 * 13 12 6 15 15 C 1.50702 * 109.42149 * 181.49730 * 13 12 6 16 16 H 1.07996 * 120.00334 * 65.77743 * 15 13 12 17 17 C 1.37882 * 119.99972 * 245.77383 * 15 13 12 18 18 N 1.31519 * 119.99455 * 10.89425 * 17 15 13 19 19 Si 1.86797 * 119.99983 * 190.89687 * 17 15 13 20 20 H 1.48504 * 109.46893 * 179.97438 * 19 17 15 21 21 H 1.48493 * 109.47008 * 299.99983 * 19 17 15 22 22 H 1.48504 * 109.47258 * 60.00016 * 19 17 15 23 23 H 1.09000 * 109.47299 * 305.71706 * 1 2 3 24 24 H 1.08996 * 109.47234 * 65.71881 * 1 2 3 25 25 H 1.09002 * 109.47027 * 185.71800 * 1 2 3 26 26 H 1.00901 * 111.05017 * 303.56179 * 4 2 1 27 27 H 1.09001 * 109.41734 * 299.56184 * 5 4 2 28 28 H 1.08991 * 109.38016 * 179.70449 * 5 4 2 29 29 H 1.09004 * 109.44696 * 298.69638 * 8 6 5 30 30 H 1.09004 * 109.44112 * 58.59238 * 8 6 5 31 31 H 1.09003 * 109.56781 * 61.88593 * 9 8 6 32 32 H 1.09000 * 109.56684 * 182.12585 * 9 8 6 33 33 H 1.08990 * 109.54841 * 178.14002 * 10 9 8 34 34 H 1.08998 * 109.54946 * 298.43189 * 10 9 8 35 35 H 1.09000 * 109.44661 * 180.26137 * 11 10 9 36 36 H 1.09004 * 109.18166 * 60.62693 * 11 10 9 37 37 H 0.96997 * 120.00559 * 5.67617 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 7 2.0205 -0.6981 -1.1973 5 6 3.4888 -0.7103 -1.2195 6 6 4.0194 -1.4221 0.0284 7 1 3.6913 -2.4615 0.0219 8 6 5.5500 -1.3685 0.0114 9 6 6.1019 -2.0451 1.2679 10 6 5.5322 -1.3387 2.5020 11 6 4.0086 -1.4064 2.4551 12 7 3.5118 -0.7550 1.2340 13 6 2.0409 -0.7255 1.2454 14 1 1.6579 -1.7460 1.2531 15 6 1.5638 -0.0018 2.4782 16 1 1.7682 1.0517 2.5990 17 6 0.8662 -0.6847 3.4519 18 7 0.8008 -1.9978 3.4152 19 14 0.0142 0.2550 4.8231 20 1 -0.6613 -0.7033 5.7345 21 1 1.0194 1.0388 5.5849 22 1 -0.9935 1.1767 4.2397 23 1 -0.3634 0.5999 0.8344 24 1 -0.3633 0.4226 -0.9367 25 1 -0.3633 -1.0226 0.1024 26 1 1.6507 -1.6355 -1.2473 27 1 3.8594 0.3146 -1.2375 28 1 3.8326 -1.2358 -2.1103 29 1 5.9215 -1.8867 -0.8727 30 1 5.8764 -0.3288 -0.0140 31 1 5.8053 -3.0939 1.2781 32 1 7.1895 -1.9732 1.2734 33 1 5.8925 -1.8330 3.4040 34 1 5.8495 -0.2959 2.5042 35 1 3.5959 -0.9013 3.3284 36 1 3.6962 -2.4507 2.4612 37 1 1.3099 -2.4904 2.7527 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259665944.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:13 Heat of formation + Delta-G solvation = -29.704046 kcal Electronic energy + Delta-G solvation = -16931.608653 eV Core-core repulsion = 14513.781523 eV Total energy + Delta-G solvation = -2417.827130 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.95079 -37.39609 -35.73181 -33.11412 -32.84719 -30.68335 -27.84708 -26.47930 -24.77244 -23.51577 -22.82116 -21.35902 -20.54991 -18.77309 -16.76043 -16.59518 -16.12273 -15.86831 -15.62684 -15.30603 -15.00242 -14.61380 -14.16727 -13.88285 -13.57658 -13.20287 -12.96326 -12.68228 -12.55933 -12.29439 -12.14701 -12.01124 -11.99325 -11.75421 -11.65972 -11.48378 -11.26457 -10.77823 -10.47965 -9.33523 -8.98796 -8.54056 -6.27485 1.52453 1.57816 1.77379 2.54380 2.98401 3.33192 3.42548 3.87947 3.92464 4.01352 4.17046 4.27866 4.35141 4.44524 4.51763 4.58438 4.62106 4.73128 4.82246 4.87975 4.92402 5.01286 5.07387 5.09381 5.13333 5.19409 5.32093 5.37333 5.40915 5.48227 5.79792 6.11730 6.16523 6.37900 6.47361 6.54472 6.79932 7.47830 8.75311 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.026040 B = 0.012326 C = 0.009080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.028910 B = 2271.040753 C = 3083.044945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.102 3.898 3 H 0.062 0.938 4 N -0.684 5.684 5 C 0.071 3.929 6 C 0.038 3.962 7 H 0.003 0.997 8 C -0.100 4.100 9 C -0.114 4.114 10 C -0.111 4.111 11 C 0.080 3.920 12 N -0.528 5.528 13 C 0.166 3.834 14 H -0.023 1.023 15 C -0.571 4.571 16 H 0.041 0.959 17 C -0.017 4.017 18 N -0.932 5.932 19 Si 1.102 2.898 20 H -0.289 1.289 21 H -0.275 1.275 22 H -0.268 1.268 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.027 0.973 26 H 0.330 0.670 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.050 0.950 36 H -0.017 1.017 37 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.500 1.360 -6.396 9.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.008 4.008 3 H 0.080 0.920 4 N -0.311 5.311 5 C -0.059 4.059 6 C -0.072 4.072 7 H 0.021 0.979 8 C -0.138 4.138 9 C -0.151 4.151 10 C -0.149 4.149 11 C -0.048 4.048 12 N -0.254 5.254 13 C 0.058 3.942 14 H -0.005 1.005 15 C -0.611 4.611 16 H 0.059 0.941 17 C -0.216 4.216 18 N -0.570 5.570 19 Si 0.925 3.075 20 H -0.215 1.215 21 H -0.200 1.200 22 H -0.193 1.193 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.047 0.953 26 H 0.146 0.854 27 H 0.091 0.909 28 H 0.116 0.884 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.001 0.999 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.627 2.237 -5.553 8.931 hybrid contribution 0.623 -1.684 -0.185 1.805 sum 7.250 0.553 -5.738 9.262 Atomic orbital electron populations 1.21455 0.94231 1.00320 1.01151 1.21483 0.95179 0.97235 0.86898 0.91986 1.61103 1.08260 1.21685 1.40005 1.22138 0.87197 1.01033 0.95549 1.22560 0.97346 0.94273 0.93048 0.97926 1.21538 0.92224 1.01701 0.98362 1.21548 1.00947 0.98385 0.94265 1.21529 0.93317 1.01299 0.98758 1.21592 0.95603 0.93510 0.94092 1.62740 1.10423 1.51601 1.00625 1.20175 0.84436 0.93537 0.96046 1.00491 1.21809 1.37709 0.96347 1.05228 0.94058 1.27003 0.96591 0.96295 1.01726 1.70965 1.42076 1.07602 1.36395 0.83129 0.76324 0.74365 0.73690 1.21455 1.20027 1.19347 0.92760 0.91326 0.95339 0.85379 0.90900 0.88391 0.89538 0.91133 0.93425 0.89301 0.91380 0.91439 0.93150 0.99891 0.93700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.66 9.12 71.98 0.66 -4.01 16 2 C 0.10 4.41 2.69 44.87 0.12 4.53 16 3 H 0.06 2.81 8.14 -2.38 -0.02 2.79 16 4 N -0.68 -24.94 6.58 -491.29 -3.23 -28.17 16 5 C 0.07 2.30 5.92 86.36 0.51 2.81 16 6 C 0.04 1.38 2.34 45.03 0.11 1.49 16 7 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 8 C -0.10 -2.83 5.30 30.65 0.16 -2.67 16 9 C -0.11 -3.22 6.01 30.66 0.18 -3.03 16 10 C -0.11 -3.81 6.09 30.52 0.19 -3.62 16 11 C 0.08 3.64 5.13 86.14 0.44 4.08 16 12 N -0.53 -23.46 4.51 -849.83 -3.84 -27.30 16 13 C 0.17 8.20 1.56 44.10 0.07 8.27 16 14 H -0.02 -1.28 6.00 -2.39 -0.01 -1.29 16 15 C -0.57 -31.02 5.79 25.60 0.15 -30.87 16 16 H 0.04 2.31 7.84 -2.91 -0.02 2.28 16 17 C -0.02 -0.92 5.24 84.66 0.44 -0.48 16 18 N -0.93 -55.75 13.56 21.45 0.29 -55.46 16 19 Si 1.10 49.68 29.92 68.60 2.05 51.74 16 20 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 H 0.05 2.37 7.47 -2.39 -0.02 2.35 16 24 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 25 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.33 11.97 8.80 -89.69 -0.79 11.18 16 27 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 1.97 8.14 -2.39 -0.02 1.96 16 33 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 34 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.05 2.63 6.60 -2.39 -0.02 2.62 16 36 H -0.02 -0.86 8.14 -2.38 -0.02 -0.88 16 37 H 0.25 15.52 6.55 -92.71 -0.61 14.92 16 Total: -1.00 -61.31 280.20 -1.30 -62.60 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.40 Total: 20.10 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: 3.03 Total: -23.51 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -6.78 Total: -110.94 kcal Atomic # 14 Polarization: 49.68 SS G_CDS: 2.05 Total: 51.74 kcal Total: -61.31 -1.30 -62.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259665944.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.900 kcal (2) G-P(sol) polarization free energy of solvation -61.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds