Wall clock time and date at job start Mon Mar 30 2020 03:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.60716 * 2 1 4 4 N 1.46911 * 109.55563 * 239.87536 * 2 1 3 5 5 C 1.46842 * 110.49055 * 300.24650 * 4 2 1 6 6 C 1.53147 * 109.76089 * 300.38283 * 5 4 2 7 7 H 1.09007 * 109.65031 * 297.12426 * 6 5 4 8 8 C 1.53166 * 108.58789 * 177.50006 * 6 5 4 9 9 C 1.53009 * 109.62013 * 181.41905 * 8 6 5 10 10 C 1.53176 * 108.87424 * 57.93921 * 9 8 6 11 11 C 1.52916 * 109.00356 * 301.71863 * 10 9 8 12 12 N 1.46821 * 109.76585 * 57.47477 * 6 5 4 13 13 C 1.47127 * 111.17786 * 302.51620 * 12 6 5 14 14 H 1.09002 * 109.42689 * 178.43697 * 13 12 6 15 15 C 1.50697 * 109.42403 * 298.32085 * 13 12 6 16 16 H 1.08004 * 120.00061 * 5.78920 * 15 13 12 17 17 C 1.37886 * 120.00248 * 185.79182 * 15 13 12 18 18 N 1.31514 * 119.99689 * 197.87311 * 17 15 13 19 19 Si 1.86798 * 119.99715 * 17.58822 * 17 15 13 20 20 H 1.48503 * 109.46940 * 180.27692 * 19 17 15 21 21 H 1.48490 * 109.47337 * 300.27923 * 19 17 15 22 22 H 1.48503 * 109.46731 * 60.28078 * 19 17 15 23 23 H 1.08998 * 109.47513 * 299.77932 * 1 2 3 24 24 H 1.09000 * 109.47088 * 59.78716 * 1 2 3 25 25 H 1.09004 * 109.47245 * 179.78115 * 1 2 3 26 26 H 1.00894 * 111.01973 * 63.85174 * 4 2 1 27 27 H 1.09004 * 109.42278 * 180.29700 * 5 4 2 28 28 H 1.08998 * 109.37609 * 60.44556 * 5 4 2 29 29 H 1.09005 * 109.44872 * 61.37730 * 8 6 5 30 30 H 1.08997 * 109.42439 * 301.44986 * 8 6 5 31 31 H 1.08998 * 109.57199 * 298.11543 * 9 8 6 32 32 H 1.09003 * 109.56584 * 177.75353 * 9 8 6 33 33 H 1.09000 * 109.54804 * 181.86785 * 10 9 8 34 34 H 1.08998 * 109.55067 * 61.57821 * 10 9 8 35 35 H 1.08997 * 109.40787 * 299.46988 * 11 10 9 36 36 H 1.08998 * 109.39872 * 179.71814 * 11 10 9 37 37 H 0.96994 * 120.00099 * 354.32790 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 7 2.0218 -0.6948 -1.1974 5 6 1.5409 -2.0821 -1.2206 6 6 2.0338 -2.8218 0.0265 7 1 3.1230 -2.8642 0.0210 8 6 1.4663 -4.2443 0.0066 9 6 1.9160 -4.9945 1.2620 10 6 1.4428 -4.2219 2.4971 11 6 2.0244 -2.8084 2.4532 12 7 1.5763 -2.1210 1.2328 13 6 2.0415 -0.7253 1.2453 14 1 1.6635 -0.2251 2.1370 15 6 3.5482 -0.6993 1.2569 16 1 4.1049 -1.6198 1.1609 17 6 4.2161 0.4996 1.3902 18 7 5.4850 0.5861 1.0554 19 14 3.3166 2.0027 2.0389 20 1 4.2488 3.1579 2.0801 21 1 2.1742 2.3201 1.1449 22 1 2.8118 1.7249 3.4076 23 1 -0.3634 0.5104 0.8919 24 1 -0.3633 0.5171 -0.8881 25 1 -0.3634 -1.0277 -0.0039 26 1 1.7518 -0.2044 -2.0368 27 1 1.9197 -2.5821 -2.1120 28 1 0.4511 -2.0868 -1.2378 29 1 1.8292 -4.7675 -0.8782 30 1 0.3776 -4.1999 -0.0192 31 1 3.0033 -5.0696 1.2727 32 1 1.4792 -5.9932 1.2666 33 1 1.7861 -4.7296 3.3985 34 1 0.3541 -4.1685 2.4990 35 1 3.1129 -2.8642 2.4584 36 1 1.6874 -2.2509 3.3272 37 1 5.9727 -0.2102 0.7931 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259665948.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:15 Heat of formation + Delta-G solvation = 3.479723 kcal Electronic energy + Delta-G solvation = -17115.196048 eV Core-core repulsion = 14698.807874 eV Total energy + Delta-G solvation = -2416.388174 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.36558 -35.91150 -33.25639 -31.70744 -31.01677 -29.04179 -26.82671 -24.52264 -23.01547 -21.92994 -21.33723 -19.24757 -18.43948 -16.79718 -15.96492 -14.89064 -14.41152 -13.91303 -13.79523 -13.54652 -13.46012 -12.92784 -12.60008 -12.29350 -12.14188 -11.71831 -11.33317 -11.22359 -11.04115 -10.69276 -10.53083 -10.39779 -10.20620 -10.08741 -9.81579 -9.58105 -9.38083 -8.83577 -8.23331 -7.52011 -7.15483 -6.24497 -3.89660 3.39367 3.44871 3.61976 4.55017 4.85806 4.99067 5.26938 5.31411 5.38883 5.45130 5.78085 5.86226 5.90960 5.99113 6.04023 6.09475 6.14009 6.15828 6.20914 6.34233 6.34677 6.44436 6.52112 6.60425 6.61925 6.75139 6.85777 6.95996 7.02815 7.20481 7.89174 7.91989 8.09720 8.24461 8.38396 8.50115 9.04103 9.76314 11.07088 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.028433 B = 0.012388 C = 0.010914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.550183 B = 2259.673354 C = 2564.866814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.081 3.919 3 H 0.080 0.920 4 N -0.658 5.658 5 C 0.070 3.930 6 C 0.095 3.905 7 H 0.054 0.946 8 C -0.112 4.112 9 C -0.117 4.117 10 C -0.116 4.116 11 C 0.062 3.938 12 N -0.522 5.522 13 C 0.191 3.809 14 H 0.032 0.968 15 C -0.595 4.595 16 H 0.055 0.945 17 C 0.034 3.966 18 N -0.908 5.908 19 Si 1.042 2.958 20 H -0.287 1.287 21 H -0.276 1.276 22 H -0.286 1.286 23 H 0.049 0.951 24 H 0.032 0.968 25 H 0.064 0.936 26 H 0.322 0.678 27 H 0.059 0.941 28 H 0.026 0.974 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.062 0.938 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.617 -6.319 -1.147 11.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.030 4.030 3 H 0.098 0.902 4 N -0.286 5.286 5 C -0.060 4.060 6 C -0.015 4.015 7 H 0.072 0.928 8 C -0.150 4.150 9 C -0.154 4.154 10 C -0.154 4.154 11 C -0.067 4.067 12 N -0.247 5.247 13 C 0.083 3.917 14 H 0.049 0.951 15 C -0.634 4.634 16 H 0.073 0.927 17 C -0.171 4.171 18 N -0.543 5.543 19 Si 0.872 3.128 20 H -0.213 1.213 21 H -0.203 1.203 22 H -0.212 1.212 23 H 0.068 0.932 24 H 0.051 0.949 25 H 0.083 0.917 26 H 0.138 0.862 27 H 0.077 0.923 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.326 -4.853 -0.574 10.528 hybrid contribution -0.173 -1.470 -0.598 1.597 sum -9.499 -6.323 -1.171 11.471 Atomic orbital electron populations 1.22514 0.99701 1.01807 0.99934 1.22167 0.89951 0.98453 0.92418 0.90199 1.60537 1.62651 1.01625 1.03769 1.21885 0.96513 0.90569 0.97007 1.21412 0.98391 0.91262 0.90423 0.92801 1.21634 1.00702 0.95653 0.97039 1.21516 1.00563 0.97864 0.95495 1.21610 1.00715 0.96136 0.96930 1.21867 0.98538 0.92876 0.93379 1.62644 1.58038 1.03387 1.00584 1.19594 0.95118 0.84967 0.92039 0.95074 1.22194 0.90677 0.95716 1.54771 0.92724 1.25548 0.96797 1.00807 0.93965 1.70811 1.10925 1.31403 1.41136 0.84095 0.75495 0.76441 0.76774 1.21316 1.20337 1.21213 0.93188 0.94858 0.91739 0.86185 0.92307 0.95625 0.92599 0.92090 0.92495 0.92797 0.92575 0.92010 0.93983 0.91990 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.31 8.81 37.16 0.33 -2.98 16 2 C 0.08 1.75 2.82 -67.74 -0.19 1.56 16 3 H 0.08 1.87 4.81 -51.93 -0.25 1.63 16 4 N -0.66 -13.69 6.32 -106.72 -0.67 -14.36 16 5 C 0.07 1.30 5.53 -3.78 -0.02 1.28 16 6 C 0.09 1.86 2.01 -67.59 -0.14 1.72 16 7 H 0.05 1.27 6.58 -51.93 -0.34 0.93 16 8 C -0.11 -1.78 5.29 -26.64 -0.14 -1.92 16 9 C -0.12 -1.75 6.01 -26.64 -0.16 -1.91 16 10 C -0.12 -1.82 6.10 -26.68 -0.16 -1.98 16 11 C 0.06 1.22 5.02 -3.78 -0.02 1.20 16 12 N -0.52 -10.85 3.98 -219.76 -0.88 -11.73 16 13 C 0.19 4.49 1.35 -68.78 -0.09 4.40 16 14 H 0.03 0.76 6.74 -51.93 -0.35 0.41 16 15 C -0.59 -16.31 6.96 -34.44 -0.24 -16.55 16 16 H 0.05 1.66 6.03 -52.48 -0.32 1.35 16 17 C 0.03 0.97 5.32 -17.82 -0.09 0.88 16 18 N -0.91 -28.05 13.69 55.43 0.76 -27.29 16 19 Si 1.04 25.19 26.35 -169.99 -4.48 20.71 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.17 5.63 56.52 0.32 -5.85 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 1.18 5.89 -51.93 -0.31 0.88 16 26 H 0.32 5.88 8.89 -39.30 -0.35 5.53 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.03 0.45 6.26 -51.93 -0.33 0.13 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.04 0.94 6.76 -51.93 -0.35 0.59 16 36 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 37 H 0.27 8.29 8.73 -40.82 -0.36 7.93 16 LS Contribution 267.48 15.07 4.03 4.03 Total: -1.00 -29.60 267.48 -8.22 -37.82 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.05 Total: 5.12 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -0.93 Total: -14.30 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.79 Total: -53.38 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -4.48 Total: 20.71 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.60 -8.22 -37.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259665948.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.296 kcal (2) G-P(sol) polarization free energy of solvation -29.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds