Wall clock time and date at job start Mon Mar 30 2020 03:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.60716 * 2 1 4 4 N 1.46911 * 109.55563 * 239.87536 * 2 1 3 5 5 C 1.46842 * 110.49055 * 300.24650 * 4 2 1 6 6 C 1.53147 * 109.76089 * 300.38283 * 5 4 2 7 7 H 1.09007 * 109.65031 * 297.12426 * 6 5 4 8 8 C 1.53166 * 108.58789 * 177.50006 * 6 5 4 9 9 C 1.53009 * 109.62013 * 181.41905 * 8 6 5 10 10 C 1.53176 * 108.87424 * 57.93921 * 9 8 6 11 11 C 1.52916 * 109.00356 * 301.71863 * 10 9 8 12 12 N 1.46821 * 109.76585 * 57.47477 * 6 5 4 13 13 C 1.47127 * 111.17786 * 302.51620 * 12 6 5 14 14 H 1.09002 * 109.42689 * 178.43697 * 13 12 6 15 15 C 1.50697 * 109.42403 * 298.32085 * 13 12 6 16 16 H 1.08004 * 120.00061 * 5.78920 * 15 13 12 17 17 C 1.37886 * 120.00248 * 185.79182 * 15 13 12 18 18 N 1.31514 * 119.99689 * 197.87311 * 17 15 13 19 19 Si 1.86798 * 119.99715 * 17.58822 * 17 15 13 20 20 H 1.48503 * 109.46940 * 180.27692 * 19 17 15 21 21 H 1.48490 * 109.47337 * 300.27923 * 19 17 15 22 22 H 1.48503 * 109.46731 * 60.28078 * 19 17 15 23 23 H 1.08998 * 109.47513 * 299.77932 * 1 2 3 24 24 H 1.09000 * 109.47088 * 59.78716 * 1 2 3 25 25 H 1.09004 * 109.47245 * 179.78115 * 1 2 3 26 26 H 1.00894 * 111.01973 * 63.85174 * 4 2 1 27 27 H 1.09004 * 109.42278 * 180.29700 * 5 4 2 28 28 H 1.08998 * 109.37609 * 60.44556 * 5 4 2 29 29 H 1.09005 * 109.44872 * 61.37730 * 8 6 5 30 30 H 1.08997 * 109.42439 * 301.44986 * 8 6 5 31 31 H 1.08998 * 109.57199 * 298.11543 * 9 8 6 32 32 H 1.09003 * 109.56584 * 177.75353 * 9 8 6 33 33 H 1.09000 * 109.54804 * 181.86785 * 10 9 8 34 34 H 1.08998 * 109.55067 * 61.57821 * 10 9 8 35 35 H 1.08997 * 109.40787 * 299.46988 * 11 10 9 36 36 H 1.08998 * 109.39872 * 179.71814 * 11 10 9 37 37 H 0.96994 * 120.00099 * 354.32790 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 7 2.0218 -0.6948 -1.1974 5 6 1.5409 -2.0821 -1.2206 6 6 2.0338 -2.8218 0.0265 7 1 3.1230 -2.8642 0.0210 8 6 1.4663 -4.2443 0.0066 9 6 1.9160 -4.9945 1.2620 10 6 1.4428 -4.2219 2.4971 11 6 2.0244 -2.8084 2.4532 12 7 1.5763 -2.1210 1.2328 13 6 2.0415 -0.7253 1.2453 14 1 1.6635 -0.2251 2.1370 15 6 3.5482 -0.6993 1.2569 16 1 4.1049 -1.6198 1.1609 17 6 4.2161 0.4996 1.3902 18 7 5.4850 0.5861 1.0554 19 14 3.3166 2.0027 2.0389 20 1 4.2488 3.1579 2.0801 21 1 2.1742 2.3201 1.1449 22 1 2.8118 1.7249 3.4076 23 1 -0.3634 0.5104 0.8919 24 1 -0.3633 0.5171 -0.8881 25 1 -0.3634 -1.0277 -0.0039 26 1 1.7518 -0.2044 -2.0368 27 1 1.9197 -2.5821 -2.1120 28 1 0.4511 -2.0868 -1.2378 29 1 1.8292 -4.7675 -0.8782 30 1 0.3776 -4.1999 -0.0192 31 1 3.0033 -5.0696 1.2727 32 1 1.4792 -5.9932 1.2666 33 1 1.7861 -4.7296 3.3985 34 1 0.3541 -4.1685 2.4990 35 1 3.1129 -2.8642 2.4584 36 1 1.6874 -2.2509 3.3272 37 1 5.9727 -0.2102 0.7931 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259665948.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:15 Heat of formation + Delta-G solvation = -19.126375 kcal Electronic energy + Delta-G solvation = -17116.176322 eV Core-core repulsion = 14698.807874 eV Total energy + Delta-G solvation = -2417.368448 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.98401 -37.41184 -35.15661 -33.61623 -32.49542 -30.58267 -28.60939 -26.18518 -24.59158 -23.52348 -23.05972 -20.75384 -20.35135 -18.66456 -17.64596 -16.44058 -15.92042 -15.65872 -15.48516 -15.18756 -15.02682 -14.59334 -14.11870 -13.93858 -13.57371 -13.49830 -12.91037 -12.72367 -12.66112 -12.48462 -12.09427 -11.89890 -11.80870 -11.58201 -11.55403 -11.19348 -11.10942 -10.69549 -10.39654 -9.23345 -8.95407 -8.45262 -6.19378 1.43475 1.51790 1.69265 2.52272 3.14523 3.26309 3.51577 3.95253 3.96880 4.10255 4.28052 4.38635 4.43041 4.51165 4.55318 4.62488 4.69303 4.74932 4.86985 4.90745 4.97867 5.03513 5.08771 5.11104 5.16745 5.24100 5.26207 5.36924 5.52078 5.56114 5.99951 6.05508 6.21439 6.37927 6.50998 6.78016 6.81826 7.55108 8.74855 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.028433 B = 0.012388 C = 0.010914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.550183 B = 2259.673354 C = 2564.866814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.081 3.919 3 H 0.061 0.939 4 N -0.686 5.686 5 C 0.072 3.928 6 C 0.091 3.909 7 H -0.001 1.001 8 C -0.104 4.104 9 C -0.117 4.117 10 C -0.106 4.106 11 C 0.059 3.941 12 N -0.510 5.510 13 C 0.188 3.812 14 H 0.029 0.971 15 C -0.577 4.577 16 H 0.006 0.994 17 C -0.022 4.022 18 N -0.945 5.945 19 Si 1.081 2.919 20 H -0.295 1.295 21 H -0.242 1.242 22 H -0.267 1.267 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.337 0.663 27 H 0.074 0.926 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.036 0.964 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.079 0.921 35 H -0.001 1.001 36 H 0.060 0.940 37 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.126 -6.935 -1.435 14.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.030 4.030 3 H 0.079 0.921 4 N -0.317 5.317 5 C -0.057 4.057 6 C -0.018 4.018 7 H 0.017 0.983 8 C -0.142 4.142 9 C -0.154 4.154 10 C -0.144 4.144 11 C -0.070 4.070 12 N -0.234 5.234 13 C 0.079 3.921 14 H 0.046 0.954 15 C -0.616 4.616 16 H 0.025 0.975 17 C -0.219 4.219 18 N -0.582 5.582 19 Si 0.903 3.097 20 H -0.221 1.221 21 H -0.167 1.167 22 H -0.193 1.193 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.155 0.845 27 H 0.092 0.908 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.055 0.945 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.017 0.983 36 H 0.078 0.922 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -12.865 -5.502 -0.875 14.019 hybrid contribution 0.989 -1.389 -0.511 1.780 sum -11.876 -6.891 -1.386 13.800 Atomic orbital electron populations 1.22352 0.96340 1.02485 1.01503 1.21955 0.92562 0.96973 0.91507 0.92068 1.60439 1.63977 1.02976 1.04263 1.21940 0.97703 0.89228 0.96839 1.21515 0.95451 0.94183 0.90657 0.98282 1.21601 1.01506 0.92839 0.98303 1.21545 0.99624 0.99505 0.94736 1.21561 1.01398 0.93165 0.98267 1.21953 0.96192 0.95818 0.93037 1.62726 1.56977 1.02265 1.01445 1.19557 0.92046 0.87312 0.93220 0.95373 1.22302 0.93164 0.93563 1.52592 0.97524 1.26983 0.96667 1.04420 0.93789 1.70970 1.12365 1.30314 1.44582 0.83635 0.75501 0.72795 0.77757 1.22106 1.16659 1.19261 0.92510 0.92425 0.91440 0.84468 0.90771 0.93356 0.90856 0.90203 0.94467 0.89203 0.90750 0.90239 0.98281 0.92174 0.94738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.52 8.81 71.98 0.63 -4.88 16 2 C 0.08 3.37 2.82 44.89 0.13 3.49 16 3 H 0.06 2.77 4.81 -2.39 -0.01 2.76 16 4 N -0.69 -27.79 6.32 -491.55 -3.11 -30.90 16 5 C 0.07 2.54 5.53 86.36 0.48 3.01 16 6 C 0.09 3.55 2.01 45.04 0.09 3.64 16 7 H 0.00 -0.05 6.58 -2.38 -0.02 -0.06 16 8 C -0.10 -3.02 5.29 30.65 0.16 -2.86 16 9 C -0.12 -3.22 6.01 30.66 0.18 -3.03 16 10 C -0.11 -3.08 6.10 30.63 0.19 -2.90 16 11 C 0.06 2.31 5.02 86.25 0.43 2.75 16 12 N -0.51 -20.85 3.98 -849.18 -3.38 -24.24 16 13 C 0.19 8.80 1.35 44.10 0.06 8.86 16 14 H 0.03 1.35 6.74 -2.39 -0.02 1.34 16 15 C -0.58 -33.06 6.96 25.60 0.18 -32.88 16 16 H 0.01 0.43 6.03 -2.91 -0.02 0.41 16 17 C -0.02 -1.27 5.32 84.66 0.45 -0.82 16 18 N -0.94 -61.40 13.69 21.45 0.29 -61.11 16 19 Si 1.08 50.95 26.35 68.60 1.81 52.76 16 20 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 21 H -0.24 -10.04 5.63 99.48 0.56 -9.48 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.07 2.18 5.89 -2.38 -0.01 2.17 16 26 H 0.34 11.69 8.89 -89.70 -0.80 10.89 16 27 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 28 H 0.05 1.51 6.26 -2.39 -0.01 1.49 16 29 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.00 -0.06 6.76 -2.39 -0.02 -0.07 16 36 H 0.06 2.34 8.08 -2.39 -0.02 2.32 16 37 H 0.24 16.37 8.73 -92.71 -0.81 15.56 16 Total: -1.00 -68.36 267.48 -1.34 -69.69 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.07 Total: 19.43 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 2.98 Total: -25.63 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -6.20 Total: -116.24 kcal Atomic # 14 Polarization: 50.95 SS G_CDS: 1.81 Total: 52.76 kcal Total: -68.36 -1.34 -69.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259665948.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.568 kcal (2) G-P(sol) polarization free energy of solvation -68.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds