Wall clock time and date at job start Mon Mar 30 2020 03:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.61145 * 2 1 4 4 N 1.47034 * 109.54088 * 239.78679 * 2 1 3 5 5 C 1.46851 * 110.66140 * 180.08304 * 4 2 1 6 6 C 1.53146 * 109.74947 * 59.37183 * 5 4 2 7 7 H 1.08998 * 109.51418 * 63.12647 * 6 5 4 8 8 C 1.53174 * 108.58596 * 182.66710 * 6 5 4 9 9 C 1.53012 * 109.61610 * 178.60228 * 8 6 5 10 10 C 1.53174 * 108.87412 * 302.06417 * 9 8 6 11 11 C 1.52915 * 109.01580 * 58.26969 * 10 9 8 12 12 N 1.46750 * 109.92163 * 300.49935 * 11 10 9 13 13 C 1.47131 * 109.90578 * 184.74289 * 12 11 10 14 14 H 1.09004 * 109.41889 * 57.57125 * 13 12 11 15 15 C 1.50701 * 109.42137 * 297.69220 * 13 12 11 16 16 H 1.08000 * 119.99801 * 294.90584 * 15 13 12 17 17 C 1.37874 * 119.99759 * 114.90961 * 15 13 12 18 18 N 1.31514 * 120.00520 * 7.48860 * 17 15 13 19 19 Si 1.86802 * 119.99895 * 187.48788 * 17 15 13 20 20 H 1.48504 * 109.47073 * 89.99886 * 19 17 15 21 21 H 1.48493 * 109.47283 * 209.99903 * 19 17 15 22 22 H 1.48501 * 109.47235 * 330.00215 * 19 17 15 23 23 H 1.08995 * 109.46544 * 297.18971 * 1 2 3 24 24 H 1.08997 * 109.46860 * 57.18339 * 1 2 3 25 25 H 1.08997 * 109.47210 * 177.18238 * 1 2 3 26 26 H 1.00900 * 111.00041 * 56.38393 * 4 2 1 27 27 H 1.09007 * 109.28594 * 299.37754 * 5 4 2 28 28 H 1.08992 * 109.56960 * 179.54514 * 5 4 2 29 29 H 1.08996 * 109.44475 * 58.56185 * 8 6 5 30 30 H 1.08999 * 109.42207 * 298.63188 * 8 6 5 31 31 H 1.08999 * 109.57351 * 182.24696 * 9 8 6 32 32 H 1.09000 * 109.66920 * 61.94002 * 9 8 6 33 33 H 1.08998 * 109.54792 * 178.12590 * 10 9 8 34 34 H 1.09005 * 109.55120 * 298.40862 * 10 9 8 35 35 H 1.09002 * 109.40142 * 60.53668 * 11 10 9 36 36 H 1.09000 * 109.40923 * 180.29129 * 11 10 9 37 37 H 0.97000 * 120.00691 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8959 1.0268 0.0000 4 7 2.0218 -0.6973 -1.1974 5 6 3.4901 -0.7135 -1.2212 6 6 4.0201 -1.4221 0.0286 7 1 3.6945 -2.4623 0.0231 8 6 5.5507 -1.3651 0.0101 9 6 6.1051 -2.0371 1.2680 10 6 5.5348 -1.3286 2.5005 11 6 4.0080 -1.4017 2.4553 12 7 3.5125 -0.7556 1.2343 13 6 2.0415 -0.7253 1.2453 14 1 1.6965 -0.2019 2.1370 15 6 1.5113 -2.1359 1.2555 16 1 1.6836 -2.7836 0.4087 17 6 0.8062 -2.5994 2.3459 18 7 0.4687 -1.7721 3.3109 19 14 0.3300 -4.4026 2.4525 20 1 1.4071 -5.1591 3.1403 21 1 -0.9352 -4.5360 3.2182 22 1 0.1400 -4.9461 1.0837 23 1 -0.3632 0.4696 0.9141 24 1 -0.3633 0.5569 -0.8636 25 1 -0.3633 -1.0264 -0.0505 26 1 1.6513 -0.2787 -2.0374 27 1 3.8611 0.3113 -1.2417 28 1 3.8350 -1.2407 -2.1106 29 1 5.8747 -0.3248 -0.0184 30 1 5.9221 -1.8852 -0.8729 31 1 7.1924 -1.9609 1.2737 32 1 5.8125 -3.0870 1.2824 33 1 5.8967 -1.8199 3.4036 34 1 5.8501 -0.2852 2.5000 35 1 3.6951 -2.4458 2.4631 36 1 3.5951 -0.8946 3.3273 37 1 -0.0270 -2.0982 4.0782 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259665955.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:18 Heat of formation + Delta-G solvation = -4.287331 kcal Electronic energy + Delta-G solvation = -17012.092620 eV Core-core repulsion = 14595.367641 eV Total energy + Delta-G solvation = -2416.724979 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.99845 -35.63581 -33.30178 -31.35534 -31.11521 -29.05384 -26.02494 -24.66468 -23.25552 -21.80761 -21.15988 -18.92429 -18.56370 -15.99196 -15.33790 -14.75462 -14.43380 -14.12799 -13.83224 -13.43730 -13.03349 -12.99171 -12.44493 -12.31956 -11.75203 -11.12285 -11.04804 -10.97913 -10.94724 -10.67080 -10.47271 -10.35051 -10.26179 -10.19506 -9.63868 -9.38246 -9.22724 -8.89779 -8.45978 -7.52361 -6.95195 -5.92978 -3.98134 3.31405 3.39310 3.44048 4.47508 4.98583 5.06553 5.37866 5.47224 5.50219 5.58563 5.91528 5.98313 6.06713 6.15937 6.25800 6.27871 6.33088 6.38933 6.47138 6.51027 6.60853 6.62114 6.73588 6.86274 6.93028 7.04260 7.23674 7.23951 7.41487 7.63467 7.98160 7.99867 8.17454 8.37465 8.46143 8.68173 9.17876 9.65705 11.09208 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.022527 B = 0.013858 C = 0.010492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.657265 B = 2020.000724 C = 2668.011345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.101 3.899 3 H 0.009 0.991 4 N -0.673 5.673 5 C 0.074 3.926 6 C 0.092 3.908 7 H 0.051 0.949 8 C -0.111 4.111 9 C -0.115 4.115 10 C -0.118 4.118 11 C 0.074 3.926 12 N -0.535 5.535 13 C 0.192 3.808 14 H 0.081 0.919 15 C -0.507 4.507 16 H 0.061 0.939 17 C 0.069 3.931 18 N -0.894 5.894 19 Si 0.880 3.120 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.274 1.274 23 H 0.053 0.947 24 H 0.023 0.977 25 H 0.072 0.928 26 H 0.320 0.680 27 H 0.019 0.981 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.600 1.891 -4.836 8.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.009 4.009 3 H 0.027 0.973 4 N -0.303 5.303 5 C -0.056 4.056 6 C -0.018 4.018 7 H 0.069 0.931 8 C -0.149 4.149 9 C -0.153 4.153 10 C -0.156 4.156 11 C -0.055 4.055 12 N -0.260 5.260 13 C 0.086 3.914 14 H 0.099 0.901 15 C -0.546 4.546 16 H 0.079 0.921 17 C -0.133 4.133 18 N -0.533 5.533 19 Si 0.708 3.292 20 H -0.209 1.209 21 H -0.215 1.215 22 H -0.199 1.199 23 H 0.072 0.928 24 H 0.042 0.958 25 H 0.091 0.909 26 H 0.136 0.864 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.614 1.770 -4.379 8.128 hybrid contribution -0.435 -0.978 -0.100 1.075 sum 6.179 0.792 -4.479 7.673 Atomic orbital electron populations 1.21550 0.94904 1.02618 0.98913 1.21620 0.94734 0.92965 0.91592 0.97270 1.60533 1.06833 1.58645 1.04276 1.21857 0.88731 0.97755 0.97298 1.21364 0.91921 0.97614 0.90905 0.93061 1.21618 0.96184 1.00294 0.96832 1.21501 0.98593 0.99552 0.95659 1.21650 0.97356 0.99994 0.96619 1.21615 0.91681 0.98790 0.93406 1.62814 1.12108 1.50918 1.00128 1.19694 0.82320 0.95736 0.93642 0.90121 1.21450 1.33562 0.97888 1.01725 0.92100 1.24970 0.95405 0.96850 0.96037 1.69885 1.39540 1.33969 1.09929 0.86786 0.77753 0.86590 0.78056 1.20934 1.21492 1.19927 0.92751 0.95771 0.90895 0.86390 0.96259 0.92282 0.92248 0.92923 0.93123 0.92534 0.92888 0.92292 0.94148 0.91805 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 9.15 37.16 0.34 -2.21 16 2 C 0.10 2.19 2.89 -67.68 -0.20 1.99 16 3 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 4 N -0.67 -13.32 6.07 -106.63 -0.65 -13.97 16 5 C 0.07 1.36 5.93 -3.78 -0.02 1.33 16 6 C 0.09 1.83 2.01 -67.59 -0.14 1.69 16 7 H 0.05 1.18 6.81 -51.93 -0.35 0.82 16 8 C -0.11 -1.83 5.30 -26.64 -0.14 -1.97 16 9 C -0.12 -1.84 6.01 -26.64 -0.16 -2.00 16 10 C -0.12 -2.05 6.10 -26.68 -0.16 -2.22 16 11 C 0.07 1.59 5.03 -3.95 -0.02 1.57 16 12 N -0.53 -11.81 4.64 -220.01 -1.02 -12.83 16 13 C 0.19 4.67 2.21 -68.78 -0.15 4.52 16 14 H 0.08 2.23 6.87 -51.93 -0.36 1.88 16 15 C -0.51 -13.29 4.59 -34.44 -0.16 -13.44 16 16 H 0.06 1.70 6.93 -52.49 -0.36 1.33 16 17 C 0.07 1.87 5.45 -17.82 -0.10 1.77 16 18 N -0.89 -24.91 12.63 55.43 0.70 -24.21 16 19 Si 0.88 21.34 29.54 -169.99 -5.02 16.32 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 23 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 1.68 7.27 -51.93 -0.38 1.31 16 26 H 0.32 5.50 8.82 -39.29 -0.35 5.16 16 27 H 0.02 0.35 8.14 -51.92 -0.42 -0.07 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.04 0.98 7.24 -51.93 -0.38 0.60 16 36 H 0.06 1.48 8.08 -51.93 -0.42 1.06 16 37 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 278.76 15.07 4.20 4.20 Total: -1.00 -27.26 278.76 -9.07 -36.33 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.38 Total: 3.12 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -0.91 Total: -8.96 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.97 Total: -51.01 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.26 -9.07 -36.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259665955.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.044 kcal (2) G-P(sol) polarization free energy of solvation -27.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds