Wall clock time and date at job start Mon Mar 30 2020 03:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.61145 * 2 1 4 4 N 1.47034 * 109.54088 * 239.78679 * 2 1 3 5 5 C 1.46851 * 110.66140 * 180.08304 * 4 2 1 6 6 C 1.53146 * 109.74947 * 59.37183 * 5 4 2 7 7 H 1.08998 * 109.51418 * 63.12647 * 6 5 4 8 8 C 1.53174 * 108.58596 * 182.66710 * 6 5 4 9 9 C 1.53012 * 109.61610 * 178.60228 * 8 6 5 10 10 C 1.53174 * 108.87412 * 302.06417 * 9 8 6 11 11 C 1.52915 * 109.01580 * 58.26969 * 10 9 8 12 12 N 1.46750 * 109.92163 * 300.49935 * 11 10 9 13 13 C 1.47131 * 109.90578 * 184.74289 * 12 11 10 14 14 H 1.09004 * 109.41889 * 57.57125 * 13 12 11 15 15 C 1.50701 * 109.42137 * 297.69220 * 13 12 11 16 16 H 1.08000 * 119.99801 * 294.90584 * 15 13 12 17 17 C 1.37874 * 119.99759 * 114.90961 * 15 13 12 18 18 N 1.31514 * 120.00520 * 7.48860 * 17 15 13 19 19 Si 1.86802 * 119.99895 * 187.48788 * 17 15 13 20 20 H 1.48504 * 109.47073 * 89.99886 * 19 17 15 21 21 H 1.48493 * 109.47283 * 209.99903 * 19 17 15 22 22 H 1.48501 * 109.47235 * 330.00215 * 19 17 15 23 23 H 1.08995 * 109.46544 * 297.18971 * 1 2 3 24 24 H 1.08997 * 109.46860 * 57.18339 * 1 2 3 25 25 H 1.08997 * 109.47210 * 177.18238 * 1 2 3 26 26 H 1.00900 * 111.00041 * 56.38393 * 4 2 1 27 27 H 1.09007 * 109.28594 * 299.37754 * 5 4 2 28 28 H 1.08992 * 109.56960 * 179.54514 * 5 4 2 29 29 H 1.08996 * 109.44475 * 58.56185 * 8 6 5 30 30 H 1.08999 * 109.42207 * 298.63188 * 8 6 5 31 31 H 1.08999 * 109.57351 * 182.24696 * 9 8 6 32 32 H 1.09000 * 109.66920 * 61.94002 * 9 8 6 33 33 H 1.08998 * 109.54792 * 178.12590 * 10 9 8 34 34 H 1.09005 * 109.55120 * 298.40862 * 10 9 8 35 35 H 1.09002 * 109.40142 * 60.53668 * 11 10 9 36 36 H 1.09000 * 109.40923 * 180.29129 * 11 10 9 37 37 H 0.97000 * 120.00691 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8959 1.0268 0.0000 4 7 2.0218 -0.6973 -1.1974 5 6 3.4901 -0.7135 -1.2212 6 6 4.0201 -1.4221 0.0286 7 1 3.6945 -2.4623 0.0231 8 6 5.5507 -1.3651 0.0101 9 6 6.1051 -2.0371 1.2680 10 6 5.5348 -1.3286 2.5005 11 6 4.0080 -1.4017 2.4553 12 7 3.5125 -0.7556 1.2343 13 6 2.0415 -0.7253 1.2453 14 1 1.6965 -0.2019 2.1370 15 6 1.5113 -2.1359 1.2555 16 1 1.6836 -2.7836 0.4087 17 6 0.8062 -2.5994 2.3459 18 7 0.4687 -1.7721 3.3109 19 14 0.3300 -4.4026 2.4525 20 1 1.4071 -5.1591 3.1403 21 1 -0.9352 -4.5360 3.2182 22 1 0.1400 -4.9461 1.0837 23 1 -0.3632 0.4696 0.9141 24 1 -0.3633 0.5569 -0.8636 25 1 -0.3633 -1.0264 -0.0505 26 1 1.6513 -0.2787 -2.0374 27 1 3.8611 0.3113 -1.2417 28 1 3.8350 -1.2407 -2.1106 29 1 5.8747 -0.3248 -0.0184 30 1 5.9221 -1.8852 -0.8729 31 1 7.1924 -1.9609 1.2737 32 1 5.8125 -3.0870 1.2824 33 1 5.8967 -1.8199 3.4036 34 1 5.8501 -0.2852 2.5000 35 1 3.6951 -2.4458 2.4631 36 1 3.5951 -0.8946 3.3273 37 1 -0.0270 -2.0982 4.0782 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259665955.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:18 Heat of formation + Delta-G solvation = -23.304861 kcal Electronic energy + Delta-G solvation = -17012.917282 eV Core-core repulsion = 14595.367641 eV Total energy + Delta-G solvation = -2417.549641 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.65770 -37.20790 -35.15705 -33.19463 -32.69781 -30.65448 -27.91389 -26.41984 -24.92502 -23.42472 -22.75190 -20.44676 -20.40486 -17.94496 -17.03594 -16.52748 -16.18615 -15.73274 -15.53445 -14.91026 -14.77445 -14.56756 -14.16654 -13.89357 -13.38997 -12.96639 -12.88356 -12.82318 -12.59212 -12.41436 -12.23070 -12.02779 -11.81254 -11.63025 -11.31679 -11.22585 -10.82632 -10.79571 -10.48589 -9.13266 -8.81107 -7.99292 -6.10558 1.34142 1.37767 1.46025 2.43596 3.15359 3.49502 3.55760 4.04784 4.07590 4.20195 4.38297 4.48812 4.55146 4.61713 4.71765 4.74829 4.81674 4.86967 4.96506 5.08664 5.12710 5.15171 5.21373 5.23220 5.32859 5.40775 5.44611 5.56105 5.65467 5.77789 5.84910 6.25454 6.43802 6.54326 6.78470 6.88690 7.08134 7.54524 8.99706 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.022527 B = 0.013858 C = 0.010492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.657265 B = 2020.000724 C = 2668.011345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.105 3.895 3 H 0.012 0.988 4 N -0.683 5.683 5 C 0.074 3.926 6 C 0.087 3.913 7 H 0.016 0.984 8 C -0.104 4.104 9 C -0.113 4.113 10 C -0.110 4.110 11 C 0.079 3.921 12 N -0.534 5.534 13 C 0.192 3.808 14 H 0.040 0.960 15 C -0.495 4.495 16 H 0.044 0.956 17 C 0.027 3.973 18 N -0.921 5.921 19 Si 0.929 3.071 20 H -0.282 1.282 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.037 0.963 24 H 0.059 0.941 25 H 0.046 0.954 26 H 0.339 0.661 27 H 0.029 0.971 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.006 0.994 36 H 0.034 0.966 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.331 1.973 -6.530 10.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.005 4.005 3 H 0.030 0.970 4 N -0.315 5.315 5 C -0.055 4.055 6 C -0.022 4.022 7 H 0.034 0.966 8 C -0.142 4.142 9 C -0.151 4.151 10 C -0.148 4.148 11 C -0.050 4.050 12 N -0.259 5.259 13 C 0.085 3.915 14 H 0.058 0.942 15 C -0.535 4.535 16 H 0.062 0.938 17 C -0.172 4.172 18 N -0.562 5.562 19 Si 0.757 3.243 20 H -0.209 1.209 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.056 0.944 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.157 0.843 27 H 0.047 0.953 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.024 0.976 36 H 0.053 0.947 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.354 1.849 -6.096 10.506 hybrid contribution -0.957 -0.986 0.401 1.431 sum 7.397 0.863 -5.695 9.375 Atomic orbital electron populations 1.21425 0.94570 1.01293 0.99699 1.21430 0.95005 0.92723 0.91380 0.96995 1.60427 1.08110 1.58700 1.04252 1.21937 0.87689 0.98452 0.97457 1.21516 0.94737 0.95482 0.90468 0.96560 1.21594 0.93011 1.01383 0.98259 1.21513 1.00605 0.98560 0.94381 1.21593 0.93587 1.01137 0.98503 1.21550 0.94985 0.95994 0.92469 1.62793 1.10561 1.51243 1.01287 1.19520 0.83923 0.94517 0.93492 0.94221 1.21427 1.32763 0.98547 1.00766 0.93801 1.25507 0.95930 0.99734 0.96070 1.69999 1.40637 1.35157 1.10413 0.86000 0.77422 0.83077 0.77818 1.20873 1.21191 1.19890 0.94410 0.92193 0.93452 0.84287 0.95253 0.89470 0.91267 0.90231 0.89572 0.93523 0.91385 0.91344 0.97584 0.94714 0.93303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.66 9.15 71.98 0.66 -4.01 16 2 C 0.10 4.52 2.89 44.86 0.13 4.65 16 3 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 4 N -0.68 -25.88 6.07 -491.26 -2.98 -28.86 16 5 C 0.07 2.53 5.93 86.36 0.51 3.04 16 6 C 0.09 3.36 2.01 45.04 0.09 3.45 16 7 H 0.02 0.75 6.81 -2.39 -0.02 0.73 16 8 C -0.10 -3.08 5.30 30.66 0.16 -2.92 16 9 C -0.11 -3.27 6.01 30.66 0.18 -3.08 16 10 C -0.11 -3.66 6.10 30.62 0.19 -3.47 16 11 C 0.08 3.49 5.03 86.30 0.43 3.92 16 12 N -0.53 -23.70 4.64 -849.97 -3.95 -27.65 16 13 C 0.19 9.61 2.21 44.10 0.10 9.71 16 14 H 0.04 2.30 6.87 -2.39 -0.02 2.29 16 15 C -0.50 -26.73 4.59 25.60 0.12 -26.61 16 16 H 0.04 2.50 6.93 -2.91 -0.02 2.48 16 17 C 0.03 1.47 5.45 84.65 0.46 1.93 16 18 N -0.92 -53.37 12.63 21.45 0.27 -53.10 16 19 Si 0.93 44.84 29.54 68.60 2.03 46.87 16 20 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 21 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 22 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 23 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.05 2.20 7.27 -2.39 -0.02 2.18 16 26 H 0.34 10.73 8.82 -89.69 -0.79 9.94 16 27 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 35 H 0.01 0.30 7.24 -2.39 -0.02 0.28 16 36 H 0.03 1.69 8.08 -2.39 -0.02 1.67 16 37 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -60.66 278.76 -1.36 -62.01 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.24 Total: 14.10 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: 3.03 Total: -13.38 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -6.66 Total: -109.60 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -60.66 -1.36 -62.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259665955.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.710 kcal (2) G-P(sol) polarization free energy of solvation -60.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds