Wall clock time and date at job start Mon Mar 30 2020 02:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00001 * 2 1 4 4 H 1.48501 * 109.47181 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46924 * 299.99433 * 3 2 1 6 6 H 1.48493 * 109.47342 * 59.99662 * 3 2 1 7 7 C 1.37875 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00188 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00178 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.76666 * 56.80286 * 9 7 2 11 11 C 1.55136 * 110.70599 * 293.60048 * 9 7 2 12 12 C 1.54902 * 101.65355 * 205.96455 * 11 9 7 13 13 N 1.47846 * 104.79729 * 37.07075 * 12 11 9 14 14 C 1.46896 * 110.99906 * 213.63720 * 13 12 11 15 15 C 1.53002 * 109.47352 * 290.84029 * 14 13 12 16 16 H 1.09003 * 110.64497 * 51.85098 * 15 14 13 17 17 C 1.54594 * 110.72302 * 175.00020 * 15 14 13 18 18 C 1.53998 * 105.13885 * 140.49641 * 17 15 14 19 19 N 1.47902 * 107.05813 * 1.22537 * 18 17 15 20 20 C 1.48536 * 105.81944 * 334.66802 * 19 18 17 21 21 C 1.47439 * 108.56607 * 335.90437 * 13 12 11 22 22 H 0.96994 * 120.00285 * 0.02562 * 1 2 3 23 23 H 1.09006 * 110.99429 * 324.05596 * 11 9 7 24 24 H 1.09006 * 110.99213 * 87.86951 * 11 9 7 25 25 H 1.09000 * 110.37274 * 278.24196 * 12 11 9 26 26 H 1.09002 * 110.37891 * 155.90405 * 12 11 9 27 27 H 1.09007 * 109.47285 * 170.84339 * 14 13 12 28 28 H 1.09002 * 109.47516 * 50.84351 * 14 13 12 29 29 H 1.08999 * 110.31149 * 21.58139 * 17 15 14 30 30 H 1.09005 * 110.39594 * 259.45134 * 17 15 14 31 31 H 1.09002 * 109.91633 * 241.87103 * 18 17 15 32 32 H 1.09001 * 109.91569 * 120.57726 * 18 17 15 33 33 H 1.00901 * 111.00008 * 95.18016 * 19 18 17 34 34 H 1.08997 * 110.67070 * 157.63763 * 20 19 18 35 35 H 1.09002 * 110.66872 * 280.77469 * 20 19 18 36 36 H 1.08998 * 109.89064 * 120.39294 * 21 13 12 37 37 H 1.08997 * 109.88911 * 241.42297 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3963 -1.2127 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.5742 -2.5555 -0.8508 11 6 0.4741 -2.6828 1.3319 12 6 0.3737 -4.2258 1.4252 13 7 1.6623 -4.7207 0.8957 14 6 1.4856 -5.9953 0.1871 15 6 1.1370 -7.0941 1.1931 16 1 0.2989 -6.7894 1.8200 17 6 0.8220 -8.4215 0.4660 18 6 1.4614 -9.5187 1.3372 19 7 2.0729 -8.8454 2.5034 20 6 2.3674 -7.4582 2.0616 21 6 2.2283 -3.6935 0.0022 22 1 -0.4850 0.8400 -0.0004 23 1 1.0372 -2.2767 2.1723 24 1 -0.5156 -2.2300 1.2718 25 1 -0.4524 -4.5899 0.8145 26 1 0.2454 -4.5358 2.4623 27 1 2.4098 -6.2553 -0.3291 28 1 0.6787 -5.8984 -0.5393 29 1 1.2660 -8.4223 -0.5295 30 1 -0.2556 -8.5716 0.3992 31 1 2.2278 -10.0450 0.7682 32 1 0.6967 -10.2197 1.6719 33 1 1.4446 -8.8477 3.2928 34 1 2.4444 -6.7895 2.9189 35 1 3.2802 -7.4294 1.4666 36 1 3.2025 -3.3752 0.3733 37 1 2.3287 -4.0940 -1.0066 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260219602.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:09 Heat of formation + Delta-G solvation = -5.548824 kcal Electronic energy + Delta-G solvation = -15739.338831 eV Core-core repulsion = 13322.559150 eV Total energy + Delta-G solvation = -2416.779681 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.05164 -37.49430 -33.33633 -31.54418 -29.46341 -28.43163 -28.25044 -24.78860 -23.46575 -21.67061 -20.44902 -19.54363 -19.34976 -16.70416 -16.50170 -15.37423 -14.68726 -14.44025 -14.29198 -13.81487 -13.66612 -12.86992 -12.49347 -12.29788 -12.14632 -11.59079 -11.46768 -11.19634 -11.03814 -10.99609 -10.77840 -10.62086 -10.47752 -10.37396 -10.13482 -9.64583 -9.27699 -8.86366 -8.65814 -8.40185 -7.58449 -6.03386 -4.05772 3.29315 3.37454 3.41767 4.23818 4.42714 4.54170 4.74968 4.97583 5.08286 5.23240 5.30268 5.52048 5.58714 5.70768 5.78038 5.86330 5.88297 5.90569 6.07235 6.13588 6.21574 6.23893 6.34237 6.42909 6.58715 6.73349 6.87519 7.14734 7.18396 7.31506 7.58714 7.60753 7.82035 7.89892 7.98912 8.41158 8.96479 9.58412 11.06875 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.070611 B = 0.005297 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.442709 B = 5284.403483 C = 5364.995091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.058 0.942 9 C 0.034 3.966 10 H 0.029 0.971 11 C -0.105 4.105 12 C 0.038 3.962 13 N -0.531 5.531 14 C 0.065 3.935 15 C -0.116 4.116 16 H 0.074 0.926 17 C -0.150 4.150 18 C 0.043 3.957 19 N -0.681 5.681 20 C 0.060 3.940 21 C 0.048 3.952 22 H 0.259 0.741 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.030 0.970 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.028 0.972 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.334 0.666 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.454 -14.216 2.234 14.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.076 0.924 9 C 0.015 3.985 10 H 0.047 0.953 11 C -0.144 4.144 12 C -0.089 4.089 13 N -0.255 5.255 14 C -0.065 4.065 15 C -0.137 4.137 16 H 0.092 0.908 17 C -0.190 4.190 18 C -0.087 4.087 19 N -0.307 5.307 20 C -0.069 4.069 21 C -0.079 4.079 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.048 0.952 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.149 0.851 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 1.355 -14.489 2.579 14.779 hybrid contribution -1.198 1.502 -0.827 2.092 sum 0.156 -12.987 1.752 13.105 Atomic orbital electron populations 1.69971 1.05960 1.26408 1.50663 1.24985 0.94838 0.99127 0.95012 0.86547 0.80219 0.83796 0.77523 1.19702 1.21100 1.21040 1.21126 0.92839 0.90180 1.50627 0.92376 1.19812 0.92853 0.92174 0.93670 0.95287 1.22636 1.01330 0.90225 1.00184 1.23125 0.89498 0.98165 0.98150 1.63593 1.24319 1.02692 1.34922 1.22189 0.99717 0.90331 0.94214 1.22694 0.99200 0.94087 0.97701 0.90799 1.22846 1.00813 0.95153 1.00148 1.22702 0.97446 0.96439 0.92108 1.62772 1.45760 1.15475 1.06740 1.23047 0.97286 0.87675 0.98931 1.22986 1.00010 0.92183 0.92760 0.93124 0.92479 0.91371 0.95180 0.92339 0.91430 0.95351 0.91206 0.91762 0.90889 0.92038 0.85149 0.90239 0.90289 0.91267 0.95001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 12.49 55.43 0.69 -24.95 16 2 C 0.06 1.72 5.36 -17.82 -0.10 1.62 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.27 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.51 -13.99 8.47 -34.44 -0.29 -14.28 16 8 H 0.06 1.58 7.53 -52.48 -0.40 1.18 16 9 C 0.03 0.86 2.78 -89.95 -0.25 0.61 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.46 5.94 -24.60 -0.15 -2.60 16 12 C 0.04 0.74 5.73 -2.30 -0.01 0.72 16 13 N -0.53 -9.92 5.08 -231.25 -1.18 -11.09 16 14 C 0.06 1.01 3.89 -3.83 -0.01 0.99 16 15 C -0.12 -1.52 3.06 -88.76 -0.27 -1.79 16 16 H 0.07 1.02 7.32 -51.93 -0.38 0.64 16 17 C -0.15 -1.64 6.51 -25.37 -0.17 -1.81 16 18 C 0.04 0.44 7.52 -2.75 -0.02 0.42 16 19 N -0.68 -7.82 7.51 -110.08 -0.83 -8.65 16 20 C 0.06 0.77 6.92 -1.90 -0.01 0.75 16 21 C 0.05 1.01 6.45 -2.84 -0.02 0.99 16 22 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 23 H 0.06 1.39 8.04 -51.93 -0.42 0.97 16 24 H 0.07 1.70 7.76 -51.93 -0.40 1.30 16 25 H 0.03 0.57 7.62 -51.93 -0.40 0.17 16 26 H 0.06 1.04 8.09 -51.93 -0.42 0.62 16 27 H 0.07 1.02 7.89 -51.93 -0.41 0.61 16 28 H 0.03 0.46 7.85 -51.93 -0.41 0.05 16 29 H 0.07 0.76 7.85 -51.93 -0.41 0.35 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.33 3.39 8.92 -39.29 -0.35 3.04 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.07 7.95 -51.93 -0.41 0.66 16 36 H 0.07 1.52 7.63 -51.93 -0.40 1.12 16 37 H 0.03 0.64 7.55 -51.93 -0.39 0.25 16 LS Contribution 289.59 15.07 4.36 4.36 Total: -1.00 -28.04 289.59 -9.70 -37.75 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.44 Total: 0.68 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -1.30 Total: -14.37 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -1.31 Total: -44.69 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.04 -9.70 -37.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260219602.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.196 kcal (2) G-P(sol) polarization free energy of solvation -28.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds