Wall clock time and date at job start Mon Mar 30 2020 02:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00001 * 2 1 4 4 H 1.48501 * 109.47181 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46924 * 299.99433 * 3 2 1 6 6 H 1.48493 * 109.47342 * 59.99662 * 3 2 1 7 7 C 1.37875 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00188 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00178 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.76666 * 56.80286 * 9 7 2 11 11 C 1.55136 * 110.70599 * 293.60048 * 9 7 2 12 12 C 1.54902 * 101.65355 * 205.96455 * 11 9 7 13 13 N 1.47846 * 104.79729 * 37.07075 * 12 11 9 14 14 C 1.46896 * 110.99906 * 213.63720 * 13 12 11 15 15 C 1.53002 * 109.47352 * 290.84029 * 14 13 12 16 16 H 1.09003 * 110.64497 * 51.85098 * 15 14 13 17 17 C 1.54594 * 110.72302 * 175.00020 * 15 14 13 18 18 C 1.53998 * 105.13885 * 140.49641 * 17 15 14 19 19 N 1.47902 * 107.05813 * 1.22537 * 18 17 15 20 20 C 1.48536 * 105.81944 * 334.66802 * 19 18 17 21 21 C 1.47439 * 108.56607 * 335.90437 * 13 12 11 22 22 H 0.96994 * 120.00285 * 0.02562 * 1 2 3 23 23 H 1.09006 * 110.99429 * 324.05596 * 11 9 7 24 24 H 1.09006 * 110.99213 * 87.86951 * 11 9 7 25 25 H 1.09000 * 110.37274 * 278.24196 * 12 11 9 26 26 H 1.09002 * 110.37891 * 155.90405 * 12 11 9 27 27 H 1.09007 * 109.47285 * 170.84339 * 14 13 12 28 28 H 1.09002 * 109.47516 * 50.84351 * 14 13 12 29 29 H 1.08999 * 110.31149 * 21.58139 * 17 15 14 30 30 H 1.09005 * 110.39594 * 259.45134 * 17 15 14 31 31 H 1.09002 * 109.91633 * 241.87103 * 18 17 15 32 32 H 1.09001 * 109.91569 * 120.57726 * 18 17 15 33 33 H 1.00901 * 111.00008 * 95.18016 * 19 18 17 34 34 H 1.08997 * 110.67070 * 157.63763 * 20 19 18 35 35 H 1.09002 * 110.66872 * 280.77469 * 20 19 18 36 36 H 1.08998 * 109.89064 * 120.39294 * 21 13 12 37 37 H 1.08997 * 109.88911 * 241.42297 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3963 -1.2127 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.5742 -2.5555 -0.8508 11 6 0.4741 -2.6828 1.3319 12 6 0.3737 -4.2258 1.4252 13 7 1.6623 -4.7207 0.8957 14 6 1.4856 -5.9953 0.1871 15 6 1.1370 -7.0941 1.1931 16 1 0.2989 -6.7894 1.8200 17 6 0.8220 -8.4215 0.4660 18 6 1.4614 -9.5187 1.3372 19 7 2.0729 -8.8454 2.5034 20 6 2.3674 -7.4582 2.0616 21 6 2.2283 -3.6935 0.0022 22 1 -0.4850 0.8400 -0.0004 23 1 1.0372 -2.2767 2.1723 24 1 -0.5156 -2.2300 1.2718 25 1 -0.4524 -4.5899 0.8145 26 1 0.2454 -4.5358 2.4623 27 1 2.4098 -6.2553 -0.3291 28 1 0.6787 -5.8984 -0.5393 29 1 1.2660 -8.4223 -0.5295 30 1 -0.2556 -8.5716 0.3992 31 1 2.2278 -10.0450 0.7682 32 1 0.6967 -10.2197 1.6719 33 1 1.4446 -8.8477 3.2928 34 1 2.4444 -6.7895 2.9189 35 1 3.2802 -7.4294 1.4666 36 1 3.2025 -3.3752 0.3733 37 1 2.3287 -4.0940 -1.0066 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260219602.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:09 Heat of formation + Delta-G solvation = -24.992241 kcal Electronic energy + Delta-G solvation = -15740.181961 eV Core-core repulsion = 13322.559150 eV Total energy + Delta-G solvation = -2417.622811 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.30410 -38.87054 -35.19560 -33.12947 -30.65137 -30.03818 -29.61213 -26.57475 -24.98489 -22.68980 -21.85488 -21.29566 -20.65267 -18.59007 -17.64977 -16.83408 -16.50230 -15.89487 -15.63478 -15.15850 -14.57628 -14.41120 -14.18726 -13.93989 -13.38675 -13.07995 -12.97934 -12.87844 -12.68131 -12.39507 -12.18891 -12.15094 -11.81845 -11.72185 -11.58424 -11.37614 -11.12586 -10.91752 -10.51037 -9.57051 -9.13005 -8.15947 -6.25478 1.39780 1.41778 1.53528 2.42071 3.09126 3.15919 3.40525 3.77795 3.90797 4.05747 4.16116 4.25068 4.39827 4.48872 4.51226 4.54117 4.66378 4.70953 4.78565 4.84618 4.90714 5.00547 5.02960 5.15395 5.19946 5.25494 5.33518 5.39378 5.56729 5.69897 5.83469 5.86085 6.14532 6.29644 6.35147 6.50043 6.83639 7.42331 8.94047 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.070611 B = 0.005297 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.442709 B = 5284.403483 C = 5364.995091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.013 3.987 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.025 3.975 10 H -0.003 1.003 11 C -0.099 4.099 12 C 0.053 3.947 13 N -0.529 5.529 14 C 0.065 3.935 15 C -0.111 4.111 16 H 0.069 0.931 17 C -0.145 4.145 18 C 0.045 3.955 19 N -0.686 5.686 20 C 0.064 3.936 21 C 0.059 3.941 22 H 0.261 0.739 23 H 0.042 0.958 24 H 0.044 0.956 25 H 0.035 0.965 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.023 0.977 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.342 0.658 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.903 -15.469 2.560 15.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.567 4.567 8 H 0.074 0.926 9 C 0.006 3.994 10 H 0.015 0.985 11 C -0.138 4.138 12 C -0.075 4.075 13 N -0.253 5.253 14 C -0.063 4.063 15 C -0.132 4.132 16 H 0.088 0.912 17 C -0.184 4.184 18 C -0.085 4.085 19 N -0.313 5.313 20 C -0.066 4.066 21 C -0.069 4.069 22 H 0.070 0.930 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.042 0.958 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.158 0.842 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.807 -15.764 2.909 16.131 hybrid contribution -1.352 1.861 -0.946 2.487 sum 0.455 -13.903 1.962 14.048 Atomic orbital electron populations 1.70089 1.07346 1.27269 1.51403 1.25773 0.95660 1.02547 0.94640 0.85523 0.79167 0.79512 0.77581 1.18960 1.20625 1.20617 1.21475 0.92999 0.91605 1.50620 0.92584 1.19788 0.93275 0.93164 0.93182 0.98473 1.22427 0.99375 0.93314 0.98687 1.22992 0.89995 0.94860 0.99653 1.63608 1.23847 1.03098 1.34711 1.22278 0.99996 0.89349 0.94723 1.22621 0.99154 0.94187 0.97199 0.91207 1.22817 1.01571 0.93943 1.00095 1.22744 0.97934 0.96317 0.91517 1.62745 1.46533 1.14489 1.07541 1.22926 0.96804 0.88436 0.98405 1.22752 0.98719 0.91571 0.93826 0.93037 0.93953 0.93738 0.94649 0.90149 0.90698 0.95838 0.91015 0.90795 0.90681 0.90158 0.84227 0.91082 0.91099 0.91951 0.94085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.04 12.49 21.45 0.27 -53.78 16 2 C 0.01 0.70 5.36 84.65 0.45 1.15 16 3 Si 0.96 43.91 29.54 68.60 2.03 45.94 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 7 C -0.53 -29.50 8.47 25.60 0.22 -29.28 16 8 H 0.06 3.07 7.53 -2.91 -0.02 3.05 16 9 C 0.03 1.29 2.78 -10.36 -0.03 1.26 16 10 H 0.00 -0.17 8.14 -2.39 -0.02 -0.18 16 11 C -0.10 -4.73 5.94 31.98 0.19 -4.54 16 12 C 0.05 1.98 5.73 86.77 0.50 2.48 16 13 N -0.53 -19.16 5.08 -885.56 -4.50 -23.66 16 14 C 0.07 1.92 3.89 86.30 0.34 2.25 16 15 C -0.11 -2.65 3.06 -9.59 -0.03 -2.68 16 16 H 0.07 1.75 7.32 -2.39 -0.02 1.73 16 17 C -0.14 -2.77 6.51 31.47 0.20 -2.57 16 18 C 0.04 0.78 7.52 86.45 0.65 1.43 16 19 N -0.69 -14.07 7.51 -502.18 -3.77 -17.84 16 20 C 0.06 1.51 6.92 86.65 0.60 2.11 16 21 C 0.06 2.50 6.45 86.65 0.56 3.05 16 22 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 23 H 0.04 2.09 8.04 -2.38 -0.02 2.08 16 24 H 0.04 2.29 7.76 -2.38 -0.02 2.27 16 25 H 0.04 1.30 7.62 -2.39 -0.02 1.28 16 26 H 0.08 2.71 8.09 -2.39 -0.02 2.69 16 27 H 0.07 2.11 7.89 -2.38 -0.02 2.09 16 28 H 0.02 0.72 7.85 -2.39 -0.02 0.71 16 29 H 0.07 1.36 7.85 -2.39 -0.02 1.34 16 30 H 0.07 1.29 8.14 -2.38 -0.02 1.28 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.34 6.09 8.92 -89.69 -0.80 5.29 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.07 1.80 7.95 -2.39 -0.02 1.78 16 36 H 0.06 2.72 7.63 -2.39 -0.02 2.70 16 37 H 0.04 1.63 7.55 -2.39 -0.02 1.62 16 Total: -1.00 -59.85 289.59 -2.10 -61.95 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.23 Total: 12.72 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: 3.65 Total: -25.33 kcal Atomic # 7 Polarization: -87.27 SS G_CDS: -8.01 Total: -95.28 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -59.85 -2.10 -61.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260219602.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.958 kcal (2) G-P(sol) polarization free energy of solvation -59.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds