Wall clock time and date at job start Mon Mar 30 2020 02:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99720 * 2 1 4 4 H 1.48498 * 109.46811 * 274.99876 * 3 2 1 5 5 H 1.48497 * 109.47223 * 34.99726 * 3 2 1 6 6 H 1.48496 * 109.47067 * 154.99649 * 3 2 1 7 7 C 1.37878 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00063 * 175.14108 * 7 2 1 9 9 C 1.50700 * 119.99824 * 355.13509 * 7 2 1 10 10 H 1.09001 * 110.64727 * 302.11415 * 9 7 2 11 11 C 1.54592 * 110.72506 * 65.26561 * 9 7 2 12 12 C 1.53993 * 105.13891 * 140.31321 * 11 9 7 13 13 N 1.47902 * 107.05916 * 1.22623 * 12 11 9 14 14 C 1.46900 * 110.99940 * 214.15458 * 13 12 11 15 15 C 1.52996 * 109.47393 * 294.22188 * 14 13 12 16 16 H 1.09000 * 110.62700 * 59.00439 * 15 14 13 17 17 C 1.55146 * 110.70691 * 182.10670 * 15 14 13 18 18 C 1.55113 * 101.55513 * 153.90969 * 17 15 14 19 19 N 1.47842 * 104.90730 * 323.15743 * 18 17 15 20 20 C 1.47442 * 108.56873 * 23.97615 * 19 18 17 21 21 C 1.48534 * 105.82047 * 334.66935 * 13 12 11 22 22 H 0.96995 * 120.00256 * 0.02562 * 1 2 3 23 23 H 1.09001 * 110.31029 * 21.39911 * 11 9 7 24 24 H 1.08999 * 110.30975 * 259.22770 * 11 9 7 25 25 H 1.09001 * 109.91986 * 241.87658 * 12 11 9 26 26 H 1.08998 * 110.08262 * 120.66859 * 12 11 9 27 27 H 1.08997 * 109.47254 * 54.22745 * 14 13 12 28 28 H 1.09004 * 109.47210 * 174.22290 * 14 13 12 29 29 H 1.09004 * 110.98852 * 272.13006 * 17 15 14 30 30 H 1.09004 * 110.98824 * 35.94519 * 17 15 14 31 31 H 1.09005 * 110.41925 * 204.24031 * 18 17 15 32 32 H 1.08997 * 110.31059 * 82.02006 * 18 17 15 33 33 H 1.00902 * 110.99743 * 146.24406 * 19 18 17 34 34 H 1.08998 * 109.88845 * 239.60429 * 20 19 18 35 35 H 1.08991 * 109.89284 * 118.41368 * 20 19 18 36 36 H 1.08996 * 110.66915 * 157.64288 * 21 13 12 37 37 H 1.09003 * 110.66866 * 280.77430 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3909 2.1074 -1.3948 5 1 1.5033 2.6199 0.8030 6 1 3.5954 1.4121 0.5918 7 6 2.0046 -1.1941 -0.0005 8 1 3.0816 -1.1957 -0.0798 9 6 1.2551 -2.4968 0.1096 10 1 0.6587 -2.5213 1.0216 11 6 0.3636 -2.7219 -1.1332 12 6 0.4892 -4.2232 -1.4517 13 7 1.3767 -4.8118 -0.4253 14 6 2.1916 -5.8946 -0.9922 15 6 1.2831 -7.0545 -1.4045 16 1 0.5485 -6.7245 -2.1391 17 6 2.1206 -8.2368 -1.9592 18 6 1.1903 -9.4423 -1.6633 19 7 0.5621 -9.1276 -0.3625 20 6 0.5851 -7.6658 -0.1714 21 6 2.2327 -3.6978 0.0569 22 1 -0.4850 0.8400 -0.0004 23 1 0.7252 -2.1258 -1.9711 24 1 -0.6720 -2.4685 -0.9068 25 1 0.9259 -4.3577 -2.4413 26 1 -0.4912 -4.6978 -1.4111 27 1 2.7290 -5.5257 -1.8658 28 1 2.9063 -6.2406 -0.2454 29 1 2.2916 -8.1256 -3.0300 30 1 3.0644 -8.3325 -1.4224 31 1 1.7708 -10.3621 -1.5918 32 1 0.4305 -9.5333 -2.4395 33 1 -0.3813 -9.4829 -0.3212 34 1 1.1435 -7.4185 0.7314 35 1 -0.4336 -7.2857 -0.0957 36 1 2.6266 -3.9170 1.0492 37 1 3.0432 -3.5035 -0.6457 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260219604.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:11 Heat of formation + Delta-G solvation = -5.074413 kcal Electronic energy + Delta-G solvation = -15745.449682 eV Core-core repulsion = 13328.690573 eV Total energy + Delta-G solvation = -2416.759109 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.98225 -37.39968 -33.38246 -31.60801 -29.58697 -28.42651 -28.16838 -24.84933 -23.46385 -21.32451 -20.65539 -19.73711 -18.97377 -16.75640 -16.35606 -15.39911 -14.98493 -14.56081 -14.31991 -13.57459 -13.27340 -12.93408 -12.51049 -12.29382 -12.17707 -11.90903 -11.49952 -11.17438 -11.03337 -10.95799 -10.77213 -10.61901 -10.44930 -10.33281 -10.14047 -9.68413 -9.18465 -8.76494 -8.42757 -8.37425 -7.72666 -6.02020 -4.04922 3.29722 3.37190 3.40855 4.27422 4.39749 4.51705 4.73693 4.95106 5.04125 5.27706 5.32383 5.50929 5.59021 5.67368 5.75253 5.85902 5.87990 5.92052 6.05076 6.11728 6.25996 6.29025 6.43462 6.48551 6.56958 6.85573 6.88266 7.15708 7.18578 7.34590 7.59664 7.68695 7.75576 7.88496 8.04647 8.45560 8.97859 9.59179 11.07817 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.072141 B = 0.005322 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.035249 B = 5259.840765 C = 5373.291989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.053 3.947 10 H 0.037 0.963 11 C -0.103 4.103 12 C 0.035 3.965 13 N -0.520 5.520 14 C 0.059 3.941 15 C -0.103 4.103 16 H 0.072 0.928 17 C -0.126 4.126 18 C 0.046 3.954 19 N -0.690 5.690 20 C 0.063 3.937 21 C 0.041 3.959 22 H 0.260 0.740 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.025 0.975 26 H 0.057 0.943 27 H 0.029 0.971 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.335 0.665 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.390 -14.141 -3.966 14.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.209 1.209 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.073 0.927 9 C 0.034 3.966 10 H 0.055 0.945 11 C -0.142 4.142 12 C -0.093 4.093 13 N -0.244 5.244 14 C -0.070 4.070 15 C -0.123 4.123 16 H 0.090 0.910 17 C -0.165 4.165 18 C -0.083 4.083 19 N -0.319 5.319 20 C -0.065 4.065 21 C -0.086 4.086 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.150 0.850 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.507 -14.387 -3.133 14.801 hybrid contribution 0.164 1.582 -1.455 2.156 sum 1.671 -12.805 -4.587 13.704 Atomic orbital electron populations 1.69987 1.05906 1.26467 1.50159 1.24968 0.94816 0.99016 0.95032 0.86621 0.80040 0.83701 0.77889 1.20877 1.21159 1.19845 1.21109 0.93074 0.90527 1.50812 0.92653 1.19529 0.91931 0.90788 0.94356 0.94488 1.22340 1.01374 0.90152 1.00300 1.22952 0.96260 0.97732 0.92312 1.64751 1.18377 1.08985 1.32282 1.22181 0.94808 0.92266 0.97769 1.22384 0.97667 0.94803 0.97471 0.90952 1.22789 0.98901 0.94053 1.00747 1.22820 0.96909 0.98546 0.90029 1.61924 1.24068 1.13627 1.32318 1.22521 1.00236 0.85303 0.98473 1.23361 0.95711 0.91310 0.98214 0.93064 0.92846 0.92221 0.95659 0.92411 0.95269 0.91150 0.91142 0.90650 0.90748 0.94330 0.85020 0.90067 0.92938 0.91868 0.94891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.55 12.55 55.43 0.70 -24.85 16 2 C 0.06 1.77 5.38 -17.82 -0.10 1.67 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.20 8.38 -34.44 -0.29 -14.49 16 8 H 0.06 1.50 7.78 -52.49 -0.41 1.09 16 9 C 0.05 1.34 2.96 -89.91 -0.27 1.07 16 10 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 11 C -0.10 -2.43 5.61 -25.38 -0.14 -2.57 16 12 C 0.04 0.69 5.61 -2.75 -0.02 0.67 16 13 N -0.52 -9.81 5.05 -230.45 -1.16 -10.97 16 14 C 0.06 0.92 4.05 -3.83 -0.02 0.90 16 15 C -0.10 -1.38 2.85 -88.80 -0.25 -1.64 16 16 H 0.07 1.01 7.42 -51.93 -0.39 0.62 16 17 C -0.13 -1.41 6.55 -24.48 -0.16 -1.57 16 18 C 0.05 0.48 7.57 -2.19 -0.02 0.46 16 19 N -0.69 -8.17 7.39 -110.67 -0.82 -8.98 16 20 C 0.06 0.85 6.94 -2.84 -0.02 0.83 16 21 C 0.04 0.88 5.97 -1.90 -0.01 0.86 16 22 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 23 H 0.05 1.34 7.84 -51.93 -0.41 0.93 16 24 H 0.06 1.49 8.09 -51.93 -0.42 1.07 16 25 H 0.03 0.47 7.64 -51.93 -0.40 0.07 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.03 0.46 7.93 -51.93 -0.41 0.05 16 28 H 0.07 1.07 8.11 -51.93 -0.42 0.64 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.33 3.40 8.91 -39.29 -0.35 3.05 16 34 H 0.08 1.22 7.80 -51.93 -0.41 0.81 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.03 0.71 7.92 -51.93 -0.41 0.30 16 LS Contribution 290.52 15.07 4.38 4.38 Total: -1.00 -28.18 290.52 -9.74 -37.93 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.53 Total: 0.06 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -1.28 Total: -13.79 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: -1.29 Total: -44.81 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.18 -9.74 -37.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260219604.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.851 kcal (2) G-P(sol) polarization free energy of solvation -28.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds