Wall clock time and date at job start Mon Mar 30 2020 02:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99720 * 2 1 4 4 H 1.48498 * 109.46811 * 274.99876 * 3 2 1 5 5 H 1.48497 * 109.47223 * 34.99726 * 3 2 1 6 6 H 1.48496 * 109.47067 * 154.99649 * 3 2 1 7 7 C 1.37878 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00063 * 175.14108 * 7 2 1 9 9 C 1.50700 * 119.99824 * 355.13509 * 7 2 1 10 10 H 1.09001 * 110.64727 * 302.11415 * 9 7 2 11 11 C 1.54592 * 110.72506 * 65.26561 * 9 7 2 12 12 C 1.53993 * 105.13891 * 140.31321 * 11 9 7 13 13 N 1.47902 * 107.05916 * 1.22623 * 12 11 9 14 14 C 1.46900 * 110.99940 * 214.15458 * 13 12 11 15 15 C 1.52996 * 109.47393 * 294.22188 * 14 13 12 16 16 H 1.09000 * 110.62700 * 59.00439 * 15 14 13 17 17 C 1.55146 * 110.70691 * 182.10670 * 15 14 13 18 18 C 1.55113 * 101.55513 * 153.90969 * 17 15 14 19 19 N 1.47842 * 104.90730 * 323.15743 * 18 17 15 20 20 C 1.47442 * 108.56873 * 23.97615 * 19 18 17 21 21 C 1.48534 * 105.82047 * 334.66935 * 13 12 11 22 22 H 0.96995 * 120.00256 * 0.02562 * 1 2 3 23 23 H 1.09001 * 110.31029 * 21.39911 * 11 9 7 24 24 H 1.08999 * 110.30975 * 259.22770 * 11 9 7 25 25 H 1.09001 * 109.91986 * 241.87658 * 12 11 9 26 26 H 1.08998 * 110.08262 * 120.66859 * 12 11 9 27 27 H 1.08997 * 109.47254 * 54.22745 * 14 13 12 28 28 H 1.09004 * 109.47210 * 174.22290 * 14 13 12 29 29 H 1.09004 * 110.98852 * 272.13006 * 17 15 14 30 30 H 1.09004 * 110.98824 * 35.94519 * 17 15 14 31 31 H 1.09005 * 110.41925 * 204.24031 * 18 17 15 32 32 H 1.08997 * 110.31059 * 82.02006 * 18 17 15 33 33 H 1.00902 * 110.99743 * 146.24406 * 19 18 17 34 34 H 1.08998 * 109.88845 * 239.60429 * 20 19 18 35 35 H 1.08991 * 109.89284 * 118.41368 * 20 19 18 36 36 H 1.08996 * 110.66915 * 157.64288 * 21 13 12 37 37 H 1.09003 * 110.66866 * 280.77430 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3909 2.1074 -1.3948 5 1 1.5033 2.6199 0.8030 6 1 3.5954 1.4121 0.5918 7 6 2.0046 -1.1941 -0.0005 8 1 3.0816 -1.1957 -0.0798 9 6 1.2551 -2.4968 0.1096 10 1 0.6587 -2.5213 1.0216 11 6 0.3636 -2.7219 -1.1332 12 6 0.4892 -4.2232 -1.4517 13 7 1.3767 -4.8118 -0.4253 14 6 2.1916 -5.8946 -0.9922 15 6 1.2831 -7.0545 -1.4045 16 1 0.5485 -6.7245 -2.1391 17 6 2.1206 -8.2368 -1.9592 18 6 1.1903 -9.4423 -1.6633 19 7 0.5621 -9.1276 -0.3625 20 6 0.5851 -7.6658 -0.1714 21 6 2.2327 -3.6978 0.0569 22 1 -0.4850 0.8400 -0.0004 23 1 0.7252 -2.1258 -1.9711 24 1 -0.6720 -2.4685 -0.9068 25 1 0.9259 -4.3577 -2.4413 26 1 -0.4912 -4.6978 -1.4111 27 1 2.7290 -5.5257 -1.8658 28 1 2.9063 -6.2406 -0.2454 29 1 2.2916 -8.1256 -3.0300 30 1 3.0644 -8.3325 -1.4224 31 1 1.7708 -10.3621 -1.5918 32 1 0.4305 -9.5333 -2.4395 33 1 -0.3813 -9.4829 -0.3212 34 1 1.1435 -7.4185 0.7314 35 1 -0.4336 -7.2857 -0.0957 36 1 2.6266 -3.9170 1.0492 37 1 3.0432 -3.5035 -0.6457 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260219604.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:11 Heat of formation + Delta-G solvation = -24.623015 kcal Electronic energy + Delta-G solvation = -15746.297373 eV Core-core repulsion = 13328.690573 eV Total energy + Delta-G solvation = -2417.606800 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.25951 -38.77807 -35.22747 -33.20003 -30.80516 -29.97154 -29.62295 -26.62073 -25.01723 -22.35732 -21.96465 -21.47020 -20.44539 -18.39769 -17.68307 -16.80002 -16.72888 -16.14587 -15.83731 -14.88740 -14.55345 -14.27726 -14.14360 -13.64110 -13.48392 -13.36583 -12.98467 -12.80562 -12.66192 -12.47746 -12.25990 -12.12995 -11.81185 -11.70578 -11.63096 -11.50601 -11.05774 -10.83461 -10.48936 -9.35218 -9.24712 -8.14726 -6.24930 1.40407 1.41986 1.52849 2.42027 3.12986 3.17239 3.38264 3.75306 3.88498 3.93754 4.11718 4.31992 4.40419 4.47250 4.51885 4.55276 4.63159 4.68276 4.78721 4.85029 4.91561 5.02088 5.04395 5.13296 5.20907 5.26262 5.29518 5.42102 5.59573 5.79373 5.85435 5.95130 6.02437 6.29246 6.39558 6.50937 6.85292 7.42935 8.94883 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.072141 B = 0.005322 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.035249 B = 5259.840765 C = 5373.291989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.535 4.535 8 H 0.055 0.945 9 C 0.043 3.957 10 H 0.002 0.998 11 C -0.095 4.095 12 C 0.048 3.952 13 N -0.522 5.522 14 C 0.061 3.939 15 C -0.100 4.100 16 H 0.070 0.930 17 C -0.121 4.121 18 C 0.047 3.953 19 N -0.697 5.697 20 C 0.067 3.933 21 C 0.054 3.946 22 H 0.261 0.739 23 H 0.033 0.967 24 H 0.036 0.964 25 H 0.041 0.959 26 H 0.072 0.928 27 H 0.032 0.968 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.344 0.656 34 H 0.063 0.937 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.303 -15.333 -4.865 16.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.574 4.574 8 H 0.073 0.927 9 C 0.024 3.976 10 H 0.020 0.980 11 C -0.134 4.134 12 C -0.080 4.080 13 N -0.246 5.246 14 C -0.068 4.068 15 C -0.120 4.120 16 H 0.089 0.911 17 C -0.160 4.160 18 C -0.082 4.082 19 N -0.327 5.327 20 C -0.062 4.062 21 C -0.074 4.074 22 H 0.070 0.930 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.090 0.910 27 H 0.050 0.950 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.160 0.840 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.426 -15.604 -4.036 16.299 hybrid contribution -0.136 1.915 -1.152 2.239 sum 2.290 -13.689 -5.188 14.817 Atomic orbital electron populations 1.70112 1.07354 1.27316 1.50929 1.25775 0.95643 1.02520 0.94635 0.85574 0.78896 0.79318 0.78069 1.20219 1.20852 1.19061 1.21454 0.93276 0.91859 1.50774 0.92682 1.19485 0.92723 0.92027 0.93399 0.97968 1.22122 0.99383 0.93073 0.98781 1.22799 0.97448 0.94610 0.93111 1.64741 1.18473 1.08678 1.32694 1.22254 0.94998 0.91693 0.97856 1.22328 0.97583 0.94684 0.97402 0.91145 1.22789 0.98576 0.93020 1.01578 1.22891 0.97116 0.98628 0.89572 1.61890 1.25001 1.12338 1.33485 1.22379 0.99485 0.86533 0.97810 1.23119 0.94893 0.90617 0.98757 0.93019 0.94855 0.94527 0.94116 0.90960 0.94979 0.90592 0.89606 0.90686 0.89544 0.93077 0.83954 0.91906 0.93654 0.91354 0.94918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.05 12.55 21.45 0.27 -53.78 16 2 C 0.01 0.75 5.38 84.65 0.46 1.21 16 3 Si 0.96 43.80 29.54 68.60 2.03 45.82 16 4 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.54 -29.88 8.38 25.60 0.21 -29.66 16 8 H 0.05 3.00 7.78 -2.91 -0.02 2.98 16 9 C 0.04 2.21 2.96 -10.34 -0.03 2.18 16 10 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 11 C -0.09 -4.57 5.61 31.47 0.18 -4.40 16 12 C 0.05 1.83 5.61 86.45 0.48 2.32 16 13 N -0.52 -19.18 5.05 -883.02 -4.46 -23.64 16 14 C 0.06 1.77 4.05 86.30 0.35 2.12 16 15 C -0.10 -2.45 2.85 -9.61 -0.03 -2.47 16 16 H 0.07 1.78 7.42 -2.39 -0.02 1.76 16 17 C -0.12 -2.33 6.55 32.05 0.21 -2.12 16 18 C 0.05 0.83 7.57 86.85 0.66 1.48 16 19 N -0.70 -14.95 7.39 -504.06 -3.73 -18.68 16 20 C 0.07 1.70 6.94 86.65 0.60 2.31 16 21 C 0.05 2.28 5.97 86.65 0.52 2.79 16 22 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 23 H 0.03 1.69 7.84 -2.39 -0.02 1.67 16 24 H 0.04 1.88 8.09 -2.39 -0.02 1.86 16 25 H 0.04 1.43 7.64 -2.39 -0.02 1.41 16 26 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.03 0.94 7.93 -2.39 -0.02 0.92 16 28 H 0.08 2.15 8.11 -2.39 -0.02 2.13 16 29 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.07 1.47 8.05 -2.39 -0.02 1.45 16 31 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.34 6.27 8.91 -89.69 -0.80 5.47 16 34 H 0.06 1.82 7.80 -2.39 -0.02 1.81 16 35 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.03 1.38 7.92 -2.39 -0.02 1.36 16 Total: -1.00 -60.48 290.52 -2.06 -62.54 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.22 Total: 11.98 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: 3.61 Total: -24.25 kcal Atomic # 7 Polarization: -88.18 SS G_CDS: -7.92 Total: -96.10 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -60.48 -2.06 -62.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260219604.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.913 kcal (2) G-P(sol) polarization free energy of solvation -60.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds