Wall clock time and date at job start Mon Mar 30 2020 03:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.28833 * 2 1 4 4 C 1.54382 * 110.41255 * 122.18462 * 2 1 3 5 5 N 1.48849 * 104.63044 * 142.79373 * 4 2 1 6 6 C 1.46903 * 111.13518 * 201.00972 * 5 4 2 7 7 C 1.53003 * 109.47349 * 190.77519 * 6 5 4 8 8 C 1.50700 * 115.54997 * 38.83433 * 7 6 5 9 9 H 1.08000 * 120.00114 * 269.63907 * 8 7 6 10 10 C 1.37883 * 119.99904 * 89.63691 * 8 7 6 11 11 N 1.31513 * 119.99839 * 174.28752 * 10 8 7 12 12 Si 1.86802 * 119.99799 * 354.28187 * 10 8 7 13 13 H 1.48505 * 109.46699 * 91.18320 * 12 10 8 14 14 H 1.48500 * 109.47137 * 211.18101 * 12 10 8 15 15 H 1.48493 * 109.47348 * 331.18679 * 12 10 8 16 16 C 1.52997 * 117.49709 * 253.13013 * 7 6 5 17 17 C 1.52997 * 117.49616 * 184.50717 * 7 6 5 18 18 C 1.48559 * 104.07860 * 320.54686 * 5 4 2 19 19 C 1.54259 * 110.32488 * 237.87552 * 2 1 3 20 20 H 1.09001 * 110.32839 * 122.10097 * 19 2 1 21 21 N 1.46900 * 110.32075 * 359.89545 * 19 2 1 22 22 H 1.09003 * 109.47196 * 182.12927 * 1 2 3 23 23 H 1.09005 * 109.47149 * 302.12141 * 1 2 3 24 24 H 1.08993 * 109.47536 * 62.12553 * 1 2 3 25 25 H 1.08996 * 110.41378 * 261.57299 * 4 2 1 26 26 H 1.09002 * 110.40865 * 23.89580 * 4 2 1 27 27 H 1.08998 * 109.46596 * 310.77228 * 6 5 4 28 28 H 1.09000 * 109.47068 * 70.76845 * 6 5 4 29 29 H 0.97002 * 119.99610 * 180.02562 * 11 10 8 30 30 H 1.08999 * 117.49589 * 359.97438 * 16 7 6 31 31 H 1.09000 * 117.49852 * 145.01888 * 16 7 6 32 32 H 1.09001 * 117.49418 * 214.97694 * 17 7 6 33 33 H 1.08999 * 117.50398 * 359.97438 * 17 7 6 34 34 H 1.09000 * 110.41543 * 280.63103 * 18 5 4 35 35 H 1.08995 * 110.41523 * 158.30822 * 18 5 4 36 36 H 1.00907 * 111.00203 * 182.91016 * 21 19 2 37 37 H 1.00900 * 111.00238 * 306.86222 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0684 -0.7707 1.2245 5 7 3.2746 -1.4823 0.7203 6 6 3.6159 -2.6222 1.5818 7 6 4.9954 -3.1591 1.1947 8 6 6.0216 -2.1156 0.8355 9 1 6.1250 -1.7901 -0.1890 10 6 6.8286 -1.5765 1.8150 11 7 7.7982 -0.7507 1.4873 12 14 6.5443 -2.0190 3.6075 13 1 7.3695 -3.2017 3.9621 14 1 6.9288 -0.8712 4.4677 15 1 5.1089 -2.3361 3.8175 16 6 5.0498 -4.4916 0.4448 17 6 5.4888 -4.4191 1.9087 18 6 2.8828 -1.9400 -0.6377 19 6 2.0658 -0.7692 -1.2251 20 1 2.7067 -0.1244 -1.8264 21 7 0.9512 -1.2802 -2.0341 22 1 -0.3634 -1.0270 0.0382 23 1 -0.3634 0.5464 0.8704 24 1 -0.3634 0.4804 -0.9083 25 1 2.3413 -0.0774 2.0201 26 1 1.3256 -1.4842 1.5813 27 1 3.6308 -2.2991 2.6227 28 1 2.8715 -3.4084 1.4560 29 1 8.3661 -0.3718 2.1763 30 1 4.1029 -4.9859 0.2277 31 1 5.8279 -4.6137 -0.3086 32 1 6.5559 -4.4934 2.1183 33 1 4.8310 -4.8653 2.6545 34 1 2.2683 -2.8380 -0.5737 35 1 3.7678 -2.1285 -1.2454 36 1 1.2897 -1.8255 -2.8127 37 1 0.3100 -1.8163 -1.4688 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300049066.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:56 Heat of formation + Delta-G solvation = 38.409858 kcal Electronic energy + Delta-G solvation = -16333.353975 eV Core-core repulsion = 13918.480485 eV Total energy + Delta-G solvation = -2414.873490 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.16893 -36.83590 -33.56286 -31.90243 -31.39909 -27.82442 -26.24025 -25.36150 -23.80005 -21.59136 -20.89957 -19.24453 -18.65072 -16.76265 -16.17209 -14.97994 -14.87812 -14.45435 -14.11557 -13.65557 -13.44161 -12.77054 -12.61430 -12.52178 -12.28671 -12.09623 -11.62121 -11.35815 -11.06055 -10.78753 -10.52259 -10.42711 -10.34765 -10.17027 -9.97186 -9.53164 -8.97285 -8.61140 -8.42745 -8.33089 -7.64723 -5.94006 -3.90786 3.36985 3.45827 3.48479 4.42638 4.55523 4.76674 4.92635 4.98439 5.09867 5.27615 5.36264 5.57062 5.59601 5.74932 5.83523 5.87706 5.94812 5.98336 6.09559 6.19031 6.20535 6.32523 6.35674 6.43487 6.46959 6.56523 6.60051 6.74208 7.07396 7.15056 7.18314 7.51358 7.56417 7.76752 7.95439 8.67898 9.10180 9.70701 11.19119 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.032232 B = 0.009048 C = 0.008472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.487542 B = 3093.702283 C = 3304.346359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.091 4.091 3 H 0.081 0.919 4 C 0.028 3.972 5 N -0.467 5.467 6 C 0.081 3.919 7 C 0.011 3.989 8 C -0.448 4.448 9 H 0.076 0.924 10 C 0.075 3.925 11 N -0.905 5.905 12 Si 0.879 3.121 13 H -0.284 1.284 14 H -0.297 1.297 15 H -0.263 1.263 16 C -0.186 4.186 17 C -0.204 4.204 18 C 0.012 3.988 19 C 0.088 3.912 20 H 0.091 0.909 21 N -0.840 5.840 22 H 0.046 0.954 23 H 0.046 0.954 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.031 0.969 27 H 0.067 0.933 28 H 0.009 0.991 29 H 0.261 0.739 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.027 0.973 35 H 0.084 0.916 36 H 0.337 0.663 37 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.142 -2.340 -2.018 13.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.110 4.110 3 H 0.099 0.901 4 C -0.100 4.100 5 N -0.189 5.189 6 C -0.048 4.048 7 C 0.010 3.990 8 C -0.486 4.486 9 H 0.094 0.906 10 C -0.125 4.125 11 N -0.543 5.543 12 Si 0.708 3.292 13 H -0.210 1.210 14 H -0.224 1.224 15 H -0.188 1.188 16 C -0.223 4.223 17 C -0.242 4.242 18 C -0.119 4.119 19 C -0.024 4.024 20 H 0.109 0.891 21 N -0.370 5.370 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.049 0.951 27 H 0.086 0.914 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.103 0.897 36 H 0.149 0.851 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.688 -1.104 -2.080 12.905 hybrid contribution -0.293 -1.846 1.492 2.392 sum -12.981 -2.951 -0.588 13.325 Atomic orbital electron populations 1.21625 0.94759 1.00971 1.01490 1.21900 0.95410 0.99921 0.93780 0.90066 1.23313 0.91903 0.97387 0.97388 1.65366 1.29363 1.23300 1.00912 1.22057 0.95788 0.90268 0.96671 1.19418 0.93874 0.87472 0.98241 1.19995 1.13337 1.19187 0.96074 0.90617 1.24873 0.94530 0.94779 0.98331 1.69896 1.18778 1.32447 1.33222 0.86905 0.79127 0.77132 0.86006 1.21013 1.22408 1.18768 1.22866 1.00628 1.04385 0.94426 1.22957 1.00759 1.06035 0.94415 1.23885 0.99304 0.95476 0.93225 1.22251 0.90697 0.95602 0.93878 0.89132 1.59164 1.18333 1.45928 1.13549 0.93476 0.93461 0.91484 0.90561 0.95051 0.91425 0.97285 0.92963 0.91659 0.89649 0.89341 0.91345 0.95526 0.89726 0.85066 0.85018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 8.04 37.16 0.30 -1.22 16 2 C -0.09 -1.29 3.65 -89.24 -0.33 -1.62 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.03 0.47 6.01 -2.02 -0.01 0.46 16 5 N -0.47 -9.26 4.64 -229.72 -1.07 -10.33 16 6 C 0.08 1.69 4.75 -3.82 -0.02 1.67 16 7 C 0.01 0.26 0.87 -155.66 -0.14 0.12 16 8 C -0.45 -12.42 8.72 -34.44 -0.30 -12.72 16 9 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 10 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 11 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 12 Si 0.88 22.17 25.14 -169.99 -4.27 17.90 16 13 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 15 H -0.26 -6.27 5.33 56.52 0.30 -5.97 16 16 C -0.19 -3.81 9.88 -26.73 -0.26 -4.08 16 17 C -0.20 -4.41 7.67 -26.73 -0.21 -4.61 16 18 C 0.01 0.20 5.85 -2.18 -0.01 0.18 16 19 C 0.09 1.28 4.19 -66.33 -0.28 1.00 16 20 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 21 N -0.84 -9.91 8.20 -3.49 -0.03 -9.94 16 22 H 0.05 0.52 6.75 -51.93 -0.35 0.17 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.77 7.84 -51.93 -0.41 0.37 16 25 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.03 0.48 7.70 -51.93 -0.40 0.08 16 27 H 0.07 1.48 6.21 -51.93 -0.32 1.16 16 28 H 0.01 0.18 7.54 -51.93 -0.39 -0.22 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 31 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 32 H 0.09 2.03 7.25 -51.93 -0.38 1.65 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.03 0.43 7.64 -51.93 -0.40 0.03 16 35 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 36 H 0.34 3.59 9.06 -39.29 -0.36 3.23 16 37 H 0.34 3.69 7.04 -39.29 -0.28 3.41 16 LS Contribution 285.05 15.07 4.30 4.30 Total: -1.00 -29.79 285.05 -7.96 -37.76 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.31 Total: 6.19 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -1.35 Total: -18.73 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.32 Total: -47.41 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.27 Total: 17.90 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.79 -7.96 -37.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300049066.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.165 kcal (2) G-P(sol) polarization free energy of solvation -29.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds