Wall clock time and date at job start Mon Mar 30 2020 03:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.28833 * 2 1 4 4 C 1.54382 * 110.41255 * 122.18462 * 2 1 3 5 5 N 1.48849 * 104.63044 * 142.79373 * 4 2 1 6 6 C 1.46903 * 111.13518 * 201.00972 * 5 4 2 7 7 C 1.53003 * 109.47349 * 190.77519 * 6 5 4 8 8 C 1.50700 * 115.54997 * 38.83433 * 7 6 5 9 9 H 1.08000 * 120.00114 * 269.63907 * 8 7 6 10 10 C 1.37883 * 119.99904 * 89.63691 * 8 7 6 11 11 N 1.31513 * 119.99839 * 174.28752 * 10 8 7 12 12 Si 1.86802 * 119.99799 * 354.28187 * 10 8 7 13 13 H 1.48505 * 109.46699 * 91.18320 * 12 10 8 14 14 H 1.48500 * 109.47137 * 211.18101 * 12 10 8 15 15 H 1.48493 * 109.47348 * 331.18679 * 12 10 8 16 16 C 1.52997 * 117.49709 * 253.13013 * 7 6 5 17 17 C 1.52997 * 117.49616 * 184.50717 * 7 6 5 18 18 C 1.48559 * 104.07860 * 320.54686 * 5 4 2 19 19 C 1.54259 * 110.32488 * 237.87552 * 2 1 3 20 20 H 1.09001 * 110.32839 * 122.10097 * 19 2 1 21 21 N 1.46900 * 110.32075 * 359.89545 * 19 2 1 22 22 H 1.09003 * 109.47196 * 182.12927 * 1 2 3 23 23 H 1.09005 * 109.47149 * 302.12141 * 1 2 3 24 24 H 1.08993 * 109.47536 * 62.12553 * 1 2 3 25 25 H 1.08996 * 110.41378 * 261.57299 * 4 2 1 26 26 H 1.09002 * 110.40865 * 23.89580 * 4 2 1 27 27 H 1.08998 * 109.46596 * 310.77228 * 6 5 4 28 28 H 1.09000 * 109.47068 * 70.76845 * 6 5 4 29 29 H 0.97002 * 119.99610 * 180.02562 * 11 10 8 30 30 H 1.08999 * 117.49589 * 359.97438 * 16 7 6 31 31 H 1.09000 * 117.49852 * 145.01888 * 16 7 6 32 32 H 1.09001 * 117.49418 * 214.97694 * 17 7 6 33 33 H 1.08999 * 117.50398 * 359.97438 * 17 7 6 34 34 H 1.09000 * 110.41543 * 280.63103 * 18 5 4 35 35 H 1.08995 * 110.41523 * 158.30822 * 18 5 4 36 36 H 1.00907 * 111.00203 * 182.91016 * 21 19 2 37 37 H 1.00900 * 111.00238 * 306.86222 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0684 -0.7707 1.2245 5 7 3.2746 -1.4823 0.7203 6 6 3.6159 -2.6222 1.5818 7 6 4.9954 -3.1591 1.1947 8 6 6.0216 -2.1156 0.8355 9 1 6.1250 -1.7901 -0.1890 10 6 6.8286 -1.5765 1.8150 11 7 7.7982 -0.7507 1.4873 12 14 6.5443 -2.0190 3.6075 13 1 7.3695 -3.2017 3.9621 14 1 6.9288 -0.8712 4.4677 15 1 5.1089 -2.3361 3.8175 16 6 5.0498 -4.4916 0.4448 17 6 5.4888 -4.4191 1.9087 18 6 2.8828 -1.9400 -0.6377 19 6 2.0658 -0.7692 -1.2251 20 1 2.7067 -0.1244 -1.8264 21 7 0.9512 -1.2802 -2.0341 22 1 -0.3634 -1.0270 0.0382 23 1 -0.3634 0.5464 0.8704 24 1 -0.3634 0.4804 -0.9083 25 1 2.3413 -0.0774 2.0201 26 1 1.3256 -1.4842 1.5813 27 1 3.6308 -2.2991 2.6227 28 1 2.8715 -3.4084 1.4560 29 1 8.3661 -0.3718 2.1763 30 1 4.1029 -4.9859 0.2277 31 1 5.8279 -4.6137 -0.3086 32 1 6.5559 -4.4934 2.1183 33 1 4.8310 -4.8653 2.6545 34 1 2.2683 -2.8380 -0.5737 35 1 3.7678 -2.1285 -1.2454 36 1 1.2897 -1.8255 -2.8127 37 1 0.3100 -1.8163 -1.4688 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300049066.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:56 Heat of formation + Delta-G solvation = 16.519707 kcal Electronic energy + Delta-G solvation = -16334.303203 eV Core-core repulsion = 13918.480485 eV Total energy + Delta-G solvation = -2415.822718 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.50862 -38.48700 -34.88701 -34.08147 -32.50881 -29.19068 -27.80778 -27.07579 -25.17429 -23.28284 -22.28371 -20.84646 -20.12287 -18.19694 -17.83831 -16.81613 -16.30549 -15.78395 -15.66390 -15.08785 -14.90304 -14.64363 -14.08887 -13.87759 -13.77405 -13.25690 -13.04067 -12.94125 -12.78609 -12.20544 -12.12312 -11.97035 -11.81110 -11.62019 -11.48387 -11.39038 -10.84164 -10.54439 -10.19968 -9.63666 -9.06962 -8.16916 -6.16605 1.36499 1.39111 1.50130 2.44359 3.02956 3.17563 3.32616 3.64354 3.74748 3.88978 4.11597 4.22387 4.30765 4.31305 4.43682 4.51670 4.57099 4.68052 4.70127 4.80947 4.83037 4.86751 4.96685 5.03305 5.12515 5.25330 5.34926 5.36089 5.47656 5.51289 5.79241 6.06593 6.30391 6.31144 6.49336 6.62538 6.87041 7.47979 9.00268 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.032232 B = 0.009048 C = 0.008472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.487542 B = 3093.702283 C = 3304.346359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.088 4.088 3 H 0.070 0.930 4 C 0.031 3.969 5 N -0.507 5.507 6 C 0.090 3.910 7 C -0.016 4.016 8 C -0.435 4.435 9 H 0.026 0.974 10 C 0.014 3.986 11 N -0.959 5.959 12 Si 0.938 3.062 13 H -0.275 1.275 14 H -0.305 1.305 15 H -0.236 1.236 16 C -0.167 4.167 17 C -0.199 4.199 18 C 0.019 3.981 19 C 0.097 3.903 20 H 0.072 0.928 21 N -0.829 5.829 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.035 0.965 29 H 0.259 0.741 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.044 0.956 35 H 0.052 0.948 36 H 0.345 0.655 37 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.073 -3.918 -1.117 16.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.107 4.107 3 H 0.089 0.911 4 C -0.097 4.097 5 N -0.230 5.230 6 C -0.039 4.039 7 C -0.017 4.017 8 C -0.474 4.474 9 H 0.044 0.956 10 C -0.181 4.181 11 N -0.601 5.601 12 Si 0.764 3.236 13 H -0.201 1.201 14 H -0.232 1.232 15 H -0.159 1.159 16 C -0.204 4.204 17 C -0.237 4.237 18 C -0.111 4.111 19 C -0.016 4.016 20 H 0.090 0.910 21 N -0.360 5.360 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.118 0.882 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.118 0.882 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.159 0.841 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.657 -2.710 -1.195 15.934 hybrid contribution 0.642 -1.350 1.066 1.836 sum -15.015 -4.060 -0.129 15.555 Atomic orbital electron populations 1.21552 0.92196 1.01943 1.02154 1.21882 0.97400 0.98909 0.92539 0.91106 1.23331 0.91072 0.97422 0.97903 1.65237 1.32009 1.23694 1.02079 1.21866 0.94652 0.91224 0.96155 1.19363 0.94166 0.87166 1.01014 1.20089 1.14027 1.19548 0.93690 0.95590 1.25690 0.94407 0.95025 1.02953 1.70061 1.20594 1.34884 1.34538 0.85946 0.80571 0.76714 0.80358 1.20116 1.23231 1.15921 1.22868 1.01738 1.02099 0.93692 1.22992 1.00416 1.04498 0.95792 1.23808 0.98493 0.97128 0.91715 1.22043 0.90990 0.94572 0.94019 0.90954 1.59110 1.17126 1.46439 1.13340 0.92314 0.92420 0.91207 0.91505 0.93121 0.92432 0.94679 0.93219 0.88239 0.90904 0.91125 0.88192 0.93830 0.92959 0.84134 0.83898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.04 71.98 0.58 -1.83 16 2 C -0.09 -2.35 3.65 -9.90 -0.04 -2.38 16 3 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 4 C 0.03 0.94 6.01 86.39 0.52 1.46 16 5 N -0.51 -19.60 4.64 -880.69 -4.09 -23.69 16 6 C 0.09 3.52 4.75 86.30 0.41 3.93 16 7 C -0.02 -0.72 0.87 -52.93 -0.05 -0.76 16 8 C -0.44 -24.79 8.72 25.60 0.22 -24.57 16 9 H 0.03 1.69 8.06 -2.91 -0.02 1.66 16 10 C 0.01 0.85 5.47 84.66 0.46 1.31 16 11 N -0.96 -61.71 13.96 21.45 0.30 -61.41 16 12 Si 0.94 45.77 25.14 68.60 1.72 47.50 16 13 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 14 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 15 H -0.24 -10.40 5.33 99.48 0.53 -9.87 16 16 C -0.17 -6.46 9.88 30.59 0.30 -6.16 16 17 C -0.20 -8.06 7.67 30.59 0.23 -7.82 16 18 C 0.02 0.63 5.85 86.45 0.51 1.13 16 19 C 0.10 2.69 4.19 45.81 0.19 2.89 16 20 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 21 N -0.83 -17.44 8.20 -164.97 -1.35 -18.80 16 22 H 0.06 1.05 6.75 -2.39 -0.02 1.03 16 23 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.07 1.38 7.84 -2.39 -0.02 1.37 16 25 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.05 1.37 7.70 -2.39 -0.02 1.35 16 27 H 0.06 2.35 6.21 -2.39 -0.01 2.33 16 28 H 0.04 1.20 7.54 -2.39 -0.02 1.18 16 29 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 30 H 0.10 3.19 8.08 -2.39 -0.02 3.17 16 31 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 32 H 0.07 3.11 7.25 -2.39 -0.02 3.09 16 33 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 34 H 0.04 1.28 7.64 -2.39 -0.02 1.26 16 35 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.35 6.54 9.06 -89.69 -0.81 5.73 16 37 H 0.35 6.32 7.04 -89.69 -0.63 5.69 16 Total: -1.00 -66.40 285.05 -0.64 -67.04 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -0.57 Total: 22.16 kcal Atomic # 6 Polarization: -36.15 SS G_CDS: 3.35 Total: -32.80 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -5.14 Total: -103.90 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.72 Total: 47.50 kcal Total: -66.40 -0.64 -67.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300049066.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.557 kcal (2) G-P(sol) polarization free energy of solvation -66.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds